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Nathan Hjelm
5a4adb866d ompi/request: fix loop conditional
This commit fixes a bug in waitany that causes the code to go past the
beginning of the request array. The loop conditional i >= 0 is invalid
since i is unsigned. Changed to loop to check (i+1) > 0.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-06-07 10:28:46 -06:00
Todd Kordenbrock
9671d6af47 Merge pull request #1689 from francois-wellenreiter/remove_trig_rdv_portals4
MTL portals4 : remove the triggered rendez-vous protocol
2016-06-06 21:55:01 -05:00
Nathan Hjelm
5d0b4679ea pml/ob1: bug fixes
This commit fixes two bugs in pml/ob1:

 - Do not called MCA_PML_OB1_PROGRESS_PENDING from
   mca_pml_ob1_send_request_start_copy as this may lead to a recursive
   call to mca_pml_ob1_send_request_process_pending.

 - In mca_pml_ob1_send_request_start_rdma return the rdma frag object
   if a btl fragment can not be allocated. This fixes a leak
   identified by @abouteiller and @bosilca.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-06-06 17:54:55 -06:00
Gilles Gouaillardet
544a2f1631 configury: fix mpifort and oshmemfort wrapper data
NAG compiler use gcc (and not ld) as a linker, so in order to pass an option to the linker,
the flag is -Wl,-Wl,,<option> and not -Wl,<option>

Thanks Paul Hargrove for the report
2016-06-06 11:54:12 +09:00
Gilles Gouaillardet
c976559877 coll/basic: fix log basic bcast
The log basic bcast was completely broken. The rank 0 gets the
hibit set to -1, so it always returned an error.
2016-06-06 11:01:51 +09:00
Gilles Gouaillardet
99fedcb7a3 fs/base: silence a memory leak in mca_fs_base_get_fstype()
Fixes CID 1351211
2016-06-06 09:20:14 +09:00
George Bosilca
9376b0340b Fix the basic barrier.
The log basic barrier was completely broken. The rank 0 gets the
hibit set to 0, so it always returned an error.
2016-06-03 23:46:25 -04:00
Edgar Gabriel
d6af5444a6 fix the get_byte_offset code 2016-06-03 11:36:53 -05:00
Josh Hursey
9f9f70ee50 Merge pull request #1746 from jjhursey/topic/op-init
ompi/op: Provide a default value for type/flags
2016-06-03 07:56:29 -05:00
Nathan Hjelm
e968ddfe64 start bug fixes (#1729)
* mpi/start: fix bugs in cm and ob1 start functions

There were several problems with the implementation of start in Open
MPI:

 - There are no checks whatsoever on the state of the request(s)
   provided to MPI_Start/MPI_Start_all. It is erroneous to provide an
   active request to either of these calls. Since we are already
   looping over the provided requests there is little overhead in
   verifying that the request can be started.

 - Both ob1 and cm were always throwing away the request on the
   initial call to start and start_all with a particular
   request. Subsequent calls would see that the request was
   pml_complete and reuse it. This introduced a leak as the initial
   request was never freed. Since the only pml request that can
   be mpi complete but not pml complete is a buffered send the
   code to reallocate the request has been moved. To detect that
   a request is indeed mpi complete but not pml complete isend_init
   in both cm and ob1 now marks the new request as pml complete.

 - If a new request was needed the callbacks on the original request
   were not copied over to the new request. This can cause osc/pt2pt
   to hang as the incoming message callback is never called.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>

* osc/pt2pt: add request for gc after starting a new request

Starting a new receive may cause a recursive call into the pt2pt
frag receive function. If this happens and the prior request is
on the garbage collection list it could cause problems. This commit
moves the gc insert until after the new request has been posted.

Signed-off-by: Nathan Hjelm <hjelmn@me.com>
2016-06-02 20:22:40 -04:00
Matias A Cabral
29ab28f4f6 Adding owner.txt file for PSM2 MTL. 2016-06-02 16:26:16 -07:00
Joshua Hursey
a776d78f2d ompi/op: Provide a default value for type/flags
* User defined ops leave the op_type unset which can confuse logic
   in a collective component that is trying to convert the op to the
   approprate local function.
2016-06-02 13:59:04 -05:00
George Bosilca
d577e12dd0 Fix comment. 2016-06-03 00:57:31 +09:00
George Bosilca
fc5d458249 Consistency in handling OPAL_ENABLE_FT_CR.
I am not sure if we should continue to maintain the request support
for FT_CR, but I tried here to simplify the code while maintaining
the same meaning.
2016-06-03 00:54:24 +09:00
Nathan Hjelm
b001184e63 request: fix warnings (#1742)
Fix warnings introduced by request rework.

Signed-off-by: Nathan Hjelm <hjelmn@me.com>
2016-06-02 04:53:16 -04:00
George Bosilca
bfcf145613 Refactor the request test and wait functions. 2016-06-02 11:58:25 +09:00
George Bosilca
2e1b1d34c6 Safety first ! 2016-06-02 11:52:43 +09:00
George Bosilca
50cec456fb ompi_request_complete with signal
Rewrite the ompi_request_complete function to take in account the
with_signal argument. Change the comment to explain the expected
behavior.
Alter all the ompi_request_complete uses to make sure the status of the
request is set before calling ompi_request_complete.

bot🏷️enhancement
2016-06-02 11:49:12 +09:00
George Bosilca
223d75595d Give a boost to MPI_Barrier.
Based on current implementation it is faster to use a blocking
send than the non-blocking version. Switch the exchange function
used in the barrier to use the blocking version combined with
the non-blocking version of the receive.
2016-06-02 11:45:25 +09:00
Ralph Castain
2c086e56be Add an experimental ability to skip the RTE barriers at the end of MPI_Init and the beginning of MPI_Finalize 2016-06-01 17:01:15 -07:00
Nathan Hjelm
086ffc1838 pml/ob1: fix race on pml completion of send requests
The request code was setting the request as pml_complete before
calling MCA_PML_OB1_SEND_REQUEST_MPI_COMPLETE. This was causing
MCA_PML_OB1_SEND_REQUEST_RETURN to be called twice in some cases. The
code now mirrors the recvreq code and only sets the request as pml
complete if the request has not already been freed.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-06-01 13:36:06 -06:00
Gilles Gouaillardet
5f565dfec3 configury: clean the flex generated .c files 2016-06-01 11:13:31 +09:00
Gilles Gouaillardet
1bbc5fadee ompi/win: silence an other warning 2016-05-31 13:18:39 +09:00
Gilles Gouaillardet
c41321b9e5 ompi/win: silence warning 2016-05-31 13:03:20 +09:00
Jeff Squyres
59f4a765b3 Merge pull request #1656 from hpcraink/pr/make_manpage
In case, we do not build Fortran, Fortran 2008 or CXX, the regexp in …
2016-05-28 11:02:12 -04:00
Nathan Hjelm
d8fd3a411a Merge pull request #1725 from hjelmn/request_fixes
ompi/request: fix bugs in MPI_Wait_some and MPI_Wait_any
2016-05-27 13:47:49 -06:00
Nathan Hjelm
0591139f49 ompi/request: fix bugs in MPI_Wait_some and MPI_Wait_any
This commit fixes two bugs in MPI_Wait_any:

 - If all requests are inactive then the sync wait would hang forever
   because no requests are attached to the sync.

 - The request pointer was pointing to the request before the completed
   request which caused the wrong request to be freed or marked inactive.

MPI_Wait_some had a similar issue if all the requests were pending.

These issues were identified by MTT.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-05-27 12:36:10 -06:00
Nathan Hjelm
0adfb328e1 win: fix warnings
Signed-off-by: Nathan Hjelm <hjelmn@me.com>
2016-05-27 10:14:02 -06:00
Thananon Patinyasakdikul
60d0fbf683 Removal of ompi_request_lock from pml/ucx. 2016-05-26 12:36:58 -04:00
George Bosilca
90f294096e Remove more references to the request mutex.
Regarding BFO it should be mentionned that this component is currently
unmaintained, and that despite my efforts I could not make it compile
(it would not compile before this patch either).
2016-05-25 23:27:06 -04:00
Nathan Hjelm
9d439664f0 pml/yalla: update for request changes
This commit brings the pml/yalla component up to date with the request
rework changes.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-05-25 15:42:53 -06:00
Nathan Hjelm
8445c885ce pml/cm: update for request changes
This fixes a hang caused by the request refactor work. The cm pml was
not updated and was hanging is most cases.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-05-25 15:35:32 -06:00
Nathan Hjelm
ef11ba9394 request: fix compilation error
The request.h header is unfortunately included files in the C++
bindings. C++ does not allow assigning from void * to another
pointer without a cast. This commit adds the cast. We can clean this
up when the C++ bindings are deleted.

Fixes open-mpi/ompi#1707

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-05-25 09:52:23 -06:00
Valentin Petrov
5ff6372886 coll/hcoll: bugfix: initialize req_type field
If left uninitialized then segfault is possible in MPI_Waitall in
    the case the field by chance equals OMPI_REQUEST_GEN.
2016-05-25 15:38:01 +03:00
George Bosilca
2b868c4952 Fix MPI datatype args.
Compensate for the datatype ID that we add to the array.
2016-05-24 23:36:54 -04:00
bosilca
b90c83840f Refactor the request completion (#1422)
* Remodel the request.
Added the wait sync primitive and integrate it into the PML and MTL
infrastructure. The multi-threaded requests are now significantly
less heavy and less noisy (only the threads associated with completed
requests are signaled).

* Fix the condition to release the request.
2016-05-24 18:20:51 -05:00
Nathan Hjelm
5126da5377 win: add support for accumulate_ordering info key
This commit adds support for the MPI-3.1 accumulate_ordering info
key. The default value is rar,war,raw,waw and is supported using an
MCA variable flag enumerator.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-05-24 11:13:30 -06:00
Jeff Squyres
e7d46b96a3 Merge pull request #1680 from yburette/topic/fix_provider_selection
mtl/ofi: Change default provider selection behavior.
2016-05-23 15:06:02 -04:00
Francois WELLENREITER
b2b0fc63e2 MTL portals4 : remove the triggered rendez-vous protocol 2016-05-23 15:50:00 +02:00
Gilles Gouaillardet
bca44592af Merge pull request #1643 from ggouaillardet/topic/romio_openbsd57
io/romio: fix filesystem type check on OpenBSD
2016-05-23 16:33:56 +09:00
George Bosilca
16d9f71d01 Correctly compute the space needed for the args.
Add checks to bail out if our precomputed value is less
than needed (we are already at fault).

bot:milestone:v1.10.3
bot:milestone:v2.0
bot🏷️bug
bot:assign: @ggouaillardet
2016-05-21 16:01:16 -04:00
George Bosilca
0641005dab Only check the parameters on valid dimensions. 2016-05-21 15:54:04 -04:00
George Bosilca
6aac0d9c22 Remove useless output stream. 2016-05-21 15:54:04 -04:00
Nathan Hjelm
31bfeede82 bml/r2: always add btl progress function
This commit changes the behavior of bml/r2 from conditionally
registering btl progress functions to always registering progress
functions. Any progress function beloning to a btl that is not yet in
use is registered as low-priority. As soon as a proc is added that
will make use of the btl is is re-registered normally.

This works around an issue with some btls. In order to progress a
first message from an unknown peer both ugni and openib need to have
their progress functions called. If either btl is not in use after the
first call to add_procs the callback was never happening. This commit
ensures the btl progress function is called at some point but the
number of progress callbacks is reduced from normal to ensure lower
overhead when a btl is not used. The current ratio is 1 low priority
progress callback for every 8 calls to opal_progress().

Fixes open-mpi/ompi#1676

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-05-21 15:54:04 -04:00
yohann
2f0cde791a mtl/ofi: Change default provider selection behavior.
As more providers get added to libfabric, the default exclude list would need
to be updated.
Instead, we choose to include only the providers known to work by default.

New default:
  - include: psm,psm2,gni
  - exclude: none
2016-05-19 10:59:25 -07:00
Ralph Castain
a35bb8453a Unlock the mutex prior to destructing it.
Thanks to Nicolas Joly for the report
2016-05-19 10:36:58 -07:00
Rainer Keller
0fb0913cd4 In case, we do not build Fortran, Fortran 2008 or CXX, the regexp in make_manpage.pl will delete all
lines up to the next ".fi" -- which for functions that do not implement the corresponding interface
as code will have all eliminated.
Change to delete the man page's content up to the next section header ".SH"

Also in case of make V=1, we'd like to see the command line, too.

Amend OMPI_Affinity_str according to the other man-pages definitions.
2016-05-17 14:21:35 +02:00
rhc54
8b534e9897 Merge pull request #1668 from rhc54/topic/slurm
When direct launching applications, we must allow the MPI layer to pr…
2016-05-16 12:23:19 -07:00
Jeff Squyres
5275e5e2a1 bml_r2: use __func__ to identify function names
There were some old/stale function names in some debugging/verbose
opal_output calls.  Use __func__ instead, so that they won't become
stale in the future.

Thanks to Durga Choudhury for pointing out the issue.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2016-05-16 11:06:47 -04:00
Ralph Castain
01ba861f2a When direct launching applications, we must allow the MPI layer to progress during RTE-level barriers. Neither SLURM nor Cray provide non-blocking fence functions, so push those calls into a separate event thread (use the OPAL async thread for this purpose so we don't create another one) and let the MPI thread sping in wait_for_completion. This also restores the "lazy" completion during MPI_Finalize to minimize cpu utilization.
Update external as well

Revise the change: we still need the MPI_Barrier in MPI_Finalize when we use a blocking fence, but do use the "lazy" wait for completion. Replace the direct logic in MPI_Init with a cleaner macro
2016-05-14 16:37:00 -07:00