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Автор SHA1 Сообщение Дата
Jeff Squyres
ae43ae4d17 MPI_Type_indexed.3in: fix array_of_displacements type
This man page contains the prototype and descriptions for both
MPI_TYPE_INDEXED and MPI_TYPE_CREATE_HINDEXED.  Bastian Beischer
noticed that the type of the array_of_displacements argument in the
MPI_TYPE_CREATE_HINDEXED was wrong.

Also, a minor update to MPI_Type_hindexed.3in: indicate that the C
type is MPI_Aint and the Fortran type is INTEGER (which is why this
function was deprecated and then deleted by the MPI Forum!).

cmr=v1.8.1:reviewer=dgoodell

This commit was SVN r31411.
2014-04-16 15:25:37 +00:00
Oscar Vega-Gisbert
5a21790caa Java: improve access to Java arrays.
This commit was SVN r31391.
2014-04-14 21:29:13 +00:00
Jeff Squyres
c0f3d80c98 Change this filename back (i.e., revert r31375).
It's a singular filename because there's only 1 interface in the
file.  Also, r31375 missed updating the name in a few places, and
broke the build for compilers that supported the mpi_f08 interface.

This commit was SVN r31389.

The following SVN revision numbers were found above:
  r31375 --> open-mpi/ompi@fe1935de14
2014-04-14 19:51:06 +00:00
Ralph Castain
fe1935de14 Rename file to match pattern used in other names and in Makefile.am
Don't know if this needs to go to 1.8.1, but will cmr it and leave for Jeff to decide

cmr=v1.8.1:reviewer=jsquyres

This commit was SVN r31375.
2014-04-12 14:43:20 +00:00
Jeff Squyres
ed32143dc5 fortran: remove warning that compiling the "mpi" module takes a long time
Since we only builds the "small" size of the "mpi" module any more, it
does not take a long time to compile.  So remove the warning that is
emitted.

Also remove a vestage of Windows support that was leftover in the
Fortran area (i.e., building mpi.obj).

This commit was SVN r31374.
2014-04-11 21:06:43 +00:00
Jeff Squyres
5551e78275 fortran: Separate pre-defined attribute and conversion interfaces
Differentiate the pre-defined attribute and conversion interfaces into
those with INTEGER handles and those with TYPE(MPI_*) handles.

Refs trac:4157

cmr=v1.8.1:ticket=trac:4512

This commit was SVN r31372.

The following Trac tickets were found above:
  Ticket 4157 --> https://svn.open-mpi.org/trac/ompi/ticket/4157
  Ticket 4512 --> https://svn.open-mpi.org/trac/ompi/ticket/4512
2014-04-11 21:01:16 +00:00
Jeff Squyres
65b95e2844 mpi_f08: pass function pointers from Fortran to C properly
Use type(c_funptr) to "cast" the fortran function pointers to
arbitrary C pointers.  In C, we then pick up the appropriate function
pointer type.

Tested with ifort 14.0.2 and gfortran 4.9 snapshot (which is what
identified that the previous method of passing function pointers was
not Fortran'08-compliant).

Refs trac:4157

This commit was SVN r31371.

The following Trac tickets were found above:
  Ticket 4157 --> https://svn.open-mpi.org/trac/ompi/ticket/4157
2014-04-11 20:56:11 +00:00
Jeff Squyres
12e82daa78 mpi_f08: Fix param name and string length for MPI_GET_LIBRARY_VERSION
Junchao Zhang pointed out to me that we had the wrong parameter name
and string length specification for the "version" parameter.  This
matters because Fortran allows passing by parameter name
(vs. parameter ordering).  Specifically, we had the interface as:

{{{
subroutine MPI_Get_library_version_f08(name,resultlen,ierror)
   character(len=MPI_MAX_PROCESSOR_NAME), intent(out) :: name
...etc.
}}}

but it should be:

{{{
subroutine MPI_Get_library_version_f08(version,resultlen,ierror)
   character(len=MPI_MAX_LIBRARY_VERSION_STRING), intent(out) :: version
...etc.
}}}

Thankfully, MPI_MAX_PROCESSOR_NAME and MPI_MAX_LIBRARY_VERSION_STRING
are both 255 in OMPI, so there's no ABI issue caused by changing the
length from MMPN --> MMLVS.

The ABI is also unaffected by the parameter name change: if you
compile/link an MPI application calling MPI_GET_LIBRARY_VERSION with
1.8, it'll still run-time link with this change.

However, if an MPI program compiled using parameter name passing with
the old/incorrect parameter name ("name"), it won't be able to compile
with the new/correct parameter name ("version").  But this will only
happen for an incorrect MPI application (because the MPI-3 mandated
parameter name is "version", not "name"), so they deserve what they
get.

cmr=v1.8.1:reviewer=dgoodell

This commit was SVN r31365.
2014-04-10 14:45:36 +00:00
George Bosilca
95a4f219ea This commit fixes some of the Coverity reported warnings. I addressed
some of the collective modules, the shared memory and the profiling
interface. I left out VT, dynamic fcoll and seq rmaps.

cmr=v1.8.1:reviewer=jsquyres:subject=silence Coverity reported warnings

This commit was SVN r31309.
2014-04-06 18:23:49 +00:00
Oscar Vega-Gisbert
f133b6b693 Java: move buffer methods from Comm.c to MPI.c
This commit was SVN r31303.
2014-04-01 21:34:51 +00:00
Oscar Vega-Gisbert
3be348e34a Java: create an MCA parameter: ompi_mpi_java_eager
This commit was SVN r31301.
2014-04-01 20:57:12 +00:00
Oscar Vega-Gisbert
3ef08328e7 Java - Info, Datatype: it is recommended to use dup() instead of clone()
This commit was SVN r31300.
2014-03-31 21:30:23 +00:00
Oscar Vega-Gisbert
aa3e2f7afd New Java method in Comm: iDup
This commit was SVN r31299.
2014-03-31 21:15:26 +00:00
Oscar Vega-Gisbert
c9e6f09af1 Java: neighborhood collective communications
This commit was SVN r31296.
2014-03-30 19:55:56 +00:00
Oscar Vega-Gisbert
a1004bf5cd Java: remove useless native datatype initialization
This commit was SVN r31293.
2014-03-29 19:08:39 +00:00
Oscar Vega-Gisbert
0e177597c3 Java: Comm.set/getInfo
This commit was SVN r31289.
2014-03-29 18:57:51 +00:00
Oscar Vega-Gisbert
845818de59 Avoid use Status member in Request.
This commit was SVN r31287.
2014-03-29 18:13:38 +00:00
Jeff Squyres
173c046617 build: add Automake-like silent/verbose macros for "ln -s ..." operations
Also, since I put some of the macros for these silent/verbose rules up
in the top-level Makefile.man-page-rules file, I renamed it to
Makefile.ompi-rules.

I've had this sitting around for a while; now seems like as good a
time as any to commit it.

This commit was SVN r31271.
2014-03-28 18:24:32 +00:00
Nathan Hjelm
595a6e94e6 Fix typos in r31260
Also added some missing values and sentinels.

cmr=v1.8:ticket=trac:4470

This commit was SVN r31263.

The following SVN revision numbers were found above:
  r31260 --> open-mpi/ompi@69036437b7

The following Trac tickets were found above:
  Ticket 4470 --> https://svn.open-mpi.org/trac/ompi/ticket/4470
2014-03-27 22:34:28 +00:00
Jeff Squyres
24f7bd327e MPI-3: Add missing MPI_Comm_get|set_info functions
Thanks to Lisandro Dalcin for pointing out the issue.

cmr=v1.8:reviewer=hjelmn

This commit was SVN r31262.
2014-03-27 21:41:59 +00:00
Nathan Hjelm
69036437b7 Add missing MPI_WEIGHTS_EMPTY constant
cmr=v1.8:reviewer=jsquyres

This commit was SVN r31260.
2014-03-27 20:59:52 +00:00
Nathan Hjelm
545d5daced osc: add missing MPI_ERR_RMA_SHARED error code and internal equivalent
cmr=v1.8:reviewer=jsquyres

This commit was SVN r31259.
2014-03-27 20:06:43 +00:00
Oscar Vega-Gisbert
cc511d0efc Avoid use Status member in Comm, Message and File.
This commit was SVN r31198.
2014-03-24 22:28:30 +00:00
Jeff Squyres
24020ef1e3 Refs trac:4372: 3rd and hopefully final addendum to Fortran API fixes for the RMA functions
These parameters should not be marked as INTENT(OUT) (they aren't in
the MPI-3 standard).

This commit was SVN r31056.

The following Trac tickets were found above:
  Ticket 4372 --> https://svn.open-mpi.org/trac/ompi/ticket/4372
2014-03-12 22:55:57 +00:00
Jeff Squyres
ccff41383c Refs trac:4372: Another addendum to Fortran API fixes for the RMA functions
* Several parameters should not be marked as INTENT(OUT) (they aren't in
  the MPI-3 standard).
* Added missing PMPI F08 OMPI interfaces

This commit was SVN r31049.

The following Trac tickets were found above:
  Ticket 4372 --> https://svn.open-mpi.org/trac/ompi/ticket/4372
2014-03-12 20:22:15 +00:00
Jeff Squyres
8a5a832085 Refs trac:4372: Addendum to Fortran API fixes for the RMA functions
These parameters should not be marked as INTENT(OUT) (they aren't in
the MPI-3 standard).

This commit was SVN r31048.

The following Trac tickets were found above:
  Ticket 4372 --> https://svn.open-mpi.org/trac/ompi/ticket/4372
2014-03-12 19:59:04 +00:00
Nathan Hjelm
6648a46963 rma: fix semantic errors in osc/rdma and MPI_Win_fence
- Return an error if the caller specified both MPI_MODE_NOPRECEDE and
   MPI_MODE_NOSUCCEED to MPI_Win_fence.

 - Return an error if the caller attempts to enter an active target
   epoch while already in a passive target epoch.

 - End an active target epoch if MPI_Win_fence is called with
   MPI_MODE_NOSUCCEED.

cmr=v1.7.5:ticket=trac:4382

This commit was SVN r31043.

The following Trac tickets were found above:
  Ticket 4382 --> https://svn.open-mpi.org/trac/ompi/ticket/4382
2014-03-12 17:14:03 +00:00
Nathan Hjelm
c173344141 Add new MPI-3.1 tools interface functions.
See https://svn.mpi-forum.org/trac/mpi-forum-web/ticket/377

This ticket adds the following functions to the standard:

 - MPI_T_cvar_get_index, MPI_T_pvar_get_index, and MPI_T_category_get_index

The ticket has passed and the functions are part of MPI-3.1 that will
be released sometime later this year. In Open MPI the functions expose
existing internal functionality so they are low-risk to add to 1.8.0. I
will leave it up to Ralph whether he wants to accept these into 1.8.

cmr=v1.8:reviewer=rhc

This commit was SVN r31037.
2014-03-12 16:03:39 +00:00
Jeff Squyres
c6fb1b51b1 Remove "medium" RMA interfaces
We no longer specify interfaces with choice buffers in the TKR "mpi"
module implementation -- MPI-3 prohibits it (see r30169 and r30170 for
more details).

cmr=v1.7.5:ticket=trac:4372

This commit was SVN r31033.

The following SVN revision numbers were found above:
  r30169 --> open-mpi/ompi@759ee33fd4
  r30170 --> open-mpi/ompi@776f6144af

The following Trac tickets were found above:
  Ticket 4372 --> https://svn.open-mpi.org/trac/ompi/ticket/4372
2014-03-12 15:51:42 +00:00
Jeff Squyres
53248a90f3 Add missing files in Makefile.am listing
cmr=v1.7.5:ticket=trac:4372

This commit was SVN r31032.

The following Trac tickets were found above:
  Ticket 4372 --> https://svn.open-mpi.org/trac/ompi/ticket/4372
2014-03-12 15:48:55 +00:00
Jeff Squyres
b8cd2878e7 Fix more pragma argument names to match dummy argument names.
Issue found by Absoft MTT runs.

cmr=v1.7.5:ticket=trac:4372

This commit was SVN r31028.

The following Trac tickets were found above:
  Ticket 4372 --> https://svn.open-mpi.org/trac/ompi/ticket/4372
2014-03-12 14:30:51 +00:00
Jeff Squyres
f3b5670dce Fix pragma argument names to match dummy argument names.
Issue found by Absoft MTT runs.

cmr=v1.7.5:ticket=trac:4372

This commit was SVN r31027.

The following Trac tickets were found above:
  Ticket 4372 --> https://svn.open-mpi.org/trac/ompi/ticket/4372
2014-03-12 14:27:43 +00:00
Jeff Squyres
3523e315b8 Fix ompi function in Fortran RMA bindings
cmr=v1.7.5:ticket=trac:4372

This commit was SVN r31026.

The following Trac tickets were found above:
  Ticket 4372 --> https://svn.open-mpi.org/trac/ompi/ticket/4372
2014-03-12 14:12:10 +00:00
Jeff Squyres
da87b506bd Remove warnings identified by clang 3.4
* Remove unused static functions
 * Remove unused static variables

cmr=v1.8:reviewer=hjelmn

This commit was SVN r31023.
2014-03-12 13:17:54 +00:00
Ralph Castain
647fdaaa22 Fix an MPI-3 compliance buglet - MPI_Info_set should now use "const" qualifiers on the key and value parameters
cmr=v1.7.5:reviewer=jsquyres

This commit was SVN r31013.
2014-03-11 23:50:09 +00:00
Nathan Hjelm
c4de1aa1ce osc: add fortran bindings for new RMA function
I have only checked that these bindings compile without warnings. They
appear to work with both intel's compilers and gfortran.

cmr=v1.7.5:reviewer=jsquyres

This commit was SVN r31010.
2014-03-11 23:02:27 +00:00
Oscar Vega-Gisbert
4d7be5b4a4 Java: send MPI_Op handle as parameter to C side
This commit was SVN r30965.
2014-03-08 20:29:50 +00:00
Jeff Squyres
baf21ab446 Fix DESTDIR installs for javadocs
Thanks to Orion Poplawski for noticing the issue
(http://www.open-mpi.org/community/lists/devel/2014/03/14263.php).

This commit was SVN r30908.
2014-03-03 16:26:18 +00:00
Ralph Castain
85770ff782 Remove stale file reference
Refs trac:4322

This commit was SVN r30904.

The following Trac tickets were found above:
  Ticket 4322 --> https://svn.open-mpi.org/trac/ompi/ticket/4322
2014-03-02 03:48:56 +00:00
Oscar Vega-Gisbert
3a31869a58 Authorship of Java bindings
This commit was SVN r30901.
2014-03-01 20:18:05 +00:00
Oscar Vega-Gisbert
4def6c5ae2 Java: avoid setting Status attributes in the C side.
Make File implementation consistent with the rest of the API.

This commit was SVN r30900.
2014-03-01 19:54:36 +00:00
Oscar Vega-Gisbert
f2043776f6 mpi.Comm: some methods must be private.
They were protected because the old Prequest implementation used them.

This commit was SVN r30859.
2014-02-26 21:17:52 +00:00
Ralph Castain
49d938de29 Merge one-sided updates to the trunk - written by Brian Barrett and Nathan Hjelmn
cmr=v1.7.5:reviewer=hjelmn:subject=Update one-sided to MPI-3

This commit was SVN r30816.
2014-02-25 17:36:43 +00:00
Oscar Vega-Gisbert
90625573ff mpi.Request: avoid calling JNI free if it is null
This commit was SVN r30806.
2014-02-24 22:28:59 +00:00
Oscar Vega-Gisbert
75d40c0ae7 Errhandler doesn't need an init method.
This commit was SVN r30800.
2014-02-23 20:10:54 +00:00
Oscar Vega-Gisbert
ad8f57396a Avoid creating status objects in the C side.
It is necessary because calling java methods from C is very slow.

This commit was SVN r30799.
2014-02-23 20:08:53 +00:00
Oscar Vega-Gisbert
1dd20f397d Send JNI arguments of type request array as long array.
This commit was SVN r30786.
2014-02-21 09:23:07 +00:00
Oscar Vega-Gisbert
5e9fbdde9b Comments about 'db' arguments.
This commit was SVN r30775.
2014-02-19 22:31:03 +00:00
Oscar Vega-Gisbert
04172e47c3 mpi.Prequest: improve start and startAll
This commit was SVN r30769.
2014-02-18 22:33:15 +00:00
Oscar Vega-Gisbert
98530055d1 mpi.Message: java object members as parameters
This commit was SVN r30755.
2014-02-17 22:26:30 +00:00
Oscar Vega-Gisbert
86e40c568a Improve access to buffers.
This commit was SVN r30745.
2014-02-16 22:58:01 +00:00
Oscar Vega-Gisbert
ecfca4c5f9 mpi.Comm: java object members as parameters
This commit was SVN r30741.
2014-02-16 18:51:14 +00:00
Oscar Vega-Gisbert
7c1802e933 mpi.Comm: java object members as parameters
This commit was SVN r30738.
2014-02-15 19:22:55 +00:00
Oscar Vega-Gisbert
d06e5ab42e Improve exception check.
This commit was SVN r30737.
2014-02-15 16:38:29 +00:00
Ralph Castain
b787e2054f Silence warning
cmr=v1.7.5:reviewer=ompi-gk1.7

This commit was SVN r30721.
2014-02-14 00:00:23 +00:00
Christoph Niethammer
010a806a58 Omit usage of pre calculated prime numbers and factorize directly.
Optimization of the MPI_Dims_create function which omits the usage of pre
calculated prime numbers and factorize directly as discussed at the developer
list.

cmr=v1.7.5:ticket=4217:reviewer=jsquyres

This commit was SVN r30695.

The following Trac tickets were found above:
  Ticket 4217 --> https://svn.open-mpi.org/trac/ompi/ticket/4217
2014-02-12 08:47:33 +00:00
Christoph Niethammer
85dce869c8 Move parameter check into appropriate code section at the begin.
Freeprocs variable was obtained from nnodes, so check the value of nnodes at
the begin in the MPI_PARAM_CHECK code section instead as discussed at the
developer list.

cmr=v1.7.5:reviewer=jsquyres:subject=move parameter check to begin


jsquyres, please review this CMR. Thanks.

This commit was SVN r30694.
2014-02-12 08:30:13 +00:00
Jeff Squyres
db41d749c1 Remove ASYNCHRONOUS from the ignore TKR mpi_f08 module.
It turns out that ASYNCHRONOUS should not be used with ignore TKR
dummy parameters (some compilers will [correctly] warn about this).

Many thanks to Rolf Rabenseifner and Christoph Niethammer, who noticed
the problem.

Submitted by Rolf Rabenseifner, reviewed by Jeff.

cmr=v1.7.5:reviewer=ompi-rm1.7:subject=Remove ASYNCHRONOUS from the ignore TKR mpi_f08 module.

This commit was SVN r30665.
2014-02-11 13:19:30 +00:00
Jeff Squyres
6f8e76df7e Revert r30539 and r30540; using the sqrt() to limit the computation is
just plain wrong (i.e., it gives wrong answers).  

When time permits, perhaps we can put in a better algorithm for
MPI_DIMS_CREATE (Andreas Schäfer mentioned that nnodes can now be on
the order of millions, and the current algorithm is... inefficient, at
best).

This commit was SVN r30606.

The following SVN revision numbers were found above:
  r30539 --> open-mpi/ompi@fb67d98867
  r30540 --> open-mpi/ompi@4417ed2133
2014-02-07 13:46:48 +00:00
Jeff Squyres
d9786c42f7 Addendum to r30531:
* Fix some comments
 * Fix some spacing in the non-verbose "make" output
 * Make javadoc non-verbose output like other non-verbose output
 * Remove the use of JAVA_CLASS_FILES; it wasn't correct any way (it
   both derived names from JAVA_SRC_FILES ''and'' used mpi/*.class, so
   many files were listed twice)
 * Move the generation of javadoc files to "make" time (vs. "make
   install" time) by putting the "doc" subdirectory in BUILT_SOURCES
 * Make doc dependent upon mpi/MPI.class, not mpi.jar -- we only need
   the classes to exist, not the final jarfile.
 * Make jdoc-install dependent upon a real build artifact (the doc
   dir), not an artificial name that will never exist (jdoc)
 * Separate the removal of the doc (and mpi) subdirectories during
   "make clean" off into the clean-local target, because CLEANFILES
   can really only had ''files'' added to it.

These changes also fix parallel builds.

cmr=v1.7.5:ticket=trac:4214

This commit was SVN r30547.

The following SVN revision numbers were found above:
  r30531 --> open-mpi/ompi@6ca8e68e4b

The following Trac tickets were found above:
  Ticket 4214 --> https://svn.open-mpi.org/trac/ompi/ticket/4214
2014-02-03 22:32:45 +00:00
Jeff Squyres
fa02bba7c5 Remove a bunch of extra whitespace.
Thanks to Andreas Schäfer for the original patch.

This commit was SVN r30541.
2014-02-03 19:30:43 +00:00
Jeff Squyres
4417ed2133 Gah; I missed the #include in r30539.
cmr=v1.7.5:ticket=trac:4217

This commit was SVN r30540.

The following SVN revision numbers were found above:
  r30539 --> open-mpi/ompi@fb67d98867

The following Trac tickets were found above:
  Ticket 4217 --> https://svn.open-mpi.org/trac/ompi/ticket/4217
2014-02-03 19:28:07 +00:00
Jeff Squyres
fb67d98867 Suggestion from Andreas Schäfer: we really only need sqrt(freeprocs)
primes.  This considerably reduces the computational load when
freeprocs is large.

cmr=v1.7.5:reviewer=hjelmn:subject=MPI_Dims_create optimization

This commit was SVN r30539.
2014-02-03 19:21:04 +00:00
Jeff Squyres
1e952808ef r30519 (and the associated CMR #4209) left out fixing
MPI_SUBARRAYS_SUPPORTED and MPI_ASYNC_PROTECTS_NONBLOCKING in the F08
descriptor prototype.

This commit fixes the F08 descriptor prototype in the same was as
r30519 did for the non-F08-descriptor implementation.

Thanks to Mike Dubman for finding the issue.

cmr=v1.7.4:reviewer=ompi-rm1.7

This commit was SVN r30532.

The following SVN revision numbers were found above:
  r30519 --> open-mpi/ompi@caaab7e8a3
2014-02-03 16:55:33 +00:00
Jeff Squyres
6ca8e68e4b Install Java API docs into $(docdir)
Fixes trac:4054

cmr=v1.7.5:reviewer=osvegis

This commit was SVN r30531.

The following Trac tickets were found above:
  Ticket 4054 --> https://svn.open-mpi.org/trac/ompi/ticket/4054
2014-02-03 16:10:08 +00:00
Jeff Squyres
caaab7e8a3 Fix Fortran delcarations of MPI_SUBARRAYS_SUPPORTED and MPI_ASYNC_PROTECTES_NONBLOCKING
Ensure that these two flags are in all of mpif.h, the mpi module, and
the mpi_f08 module.  Thanks to Rolf Rabenseifner for pointing out the
issue.

cmr=v1.7.4:reviewer=ompi-rm1.7

This commit was SVN r30519.
2014-01-31 15:22:12 +00:00
Jeff Squyres
772afc760e Shift .h files from one Makefile.am to another to enable "make dist"
cmr=v1.7.4:ticket=4162

This commit was SVN r30384.

The following Trac tickets were found above:
  Ticket 4162 --> https://svn.open-mpi.org/trac/ompi/ticket/4162
2014-01-23 02:00:05 +00:00
Jeff Squyres
2281a682ba Remove old kruft from the Makefile.am
The dist graph functions are on the trunk and have long-since been
added to the relevant lists.

cmr=v1.7.5:ticket=4163

This commit was SVN r30382.

The following Trac tickets were found above:
  Ticket 4163 --> https://svn.open-mpi.org/trac/ompi/ticket/4163
2014-01-23 01:33:44 +00:00
Jeff Squyres
7515d2caa9 Add Emacs mode at the top of the file
cmr=v1.7.5:ticket=4163

This commit was SVN r30381.

The following Trac tickets were found above:
  Ticket 4163 --> https://svn.open-mpi.org/trac/ompi/ticket/4163
2014-01-23 01:32:26 +00:00
Jeff Squyres
d910522ff6 Remove placeholder text file.
cmr=v1.7.5:subject=Rollup of Fortran fixes for 1.7.5

This commit was SVN r30380.
2014-01-23 01:30:59 +00:00
Jeff Squyres
aa0ceaa78b Move common code to ompi/mpi/fortran/base.
The attribute and conversion callback subroutine interfaces
are used by all 3 modules, and belong in the fortran/base directory,
not the directory of a specific module.

Also clean up some comments.

cmr=v1.7.4:ticket=4162

This commit was SVN r30378.

The following Trac tickets were found above:
  Ticket 4162 --> https://svn.open-mpi.org/trac/ompi/ticket/4162
2014-01-23 01:28:04 +00:00
Jeff Squyres
19617394f0 Add profiling versions of dist_graph functions into the library
Also fix the interfaces that have logical parameters (the
non-profiling versions were added/fixed a long time ago; it looks like
the profiling versions were inadvertantly skipped).

cmr=v1.7.4:ticket=4162

This commit was SVN r30377.

The following Trac tickets were found above:
  Ticket 4162 --> https://svn.open-mpi.org/trac/ompi/ticket/4162
2014-01-23 01:24:54 +00:00
Jeff Squyres
5aa75d0ed9 Add missing pmpi interfaces for neighbor routines
Somehow these interfaces were missed when adding these interfaces.

cmr=v1.7.4:ticket=4162

This commit was SVN r30376.

The following Trac tickets were found above:
  Ticket 4162 --> https://svn.open-mpi.org/trac/ompi/ticket/4162
2014-01-23 01:23:31 +00:00
Jeff Squyres
fe76eac8ab Revert part of SVN r30273: remove "protected" from special Fortran sentinels
r30273 made the use of the Fortran "protected" keyword be
compiler-specific (i.e., configure/macro-ized it).  But it
inadvertantly added the use of "protected" to some sentinel constants
that should not be protected (e.g., MPI_STATUS_IGNORE).

This commit reverts the addition of "protected" to the constants that
should not be protected.

cmr=v1.7.4:subject=Rollup of Fortran fixes for v1.7.4

This commit was SVN r30375.

The following SVN revision numbers were found above:
  r30273 --> open-mpi/ompi@5f17bc3c2c
2014-01-23 01:21:42 +00:00
Jeff Squyres
be0e557d3c Revert r30164: it was just the wrong thing to do.
Fixes trac:4155.

This commit was SVN r30360.

The following SVN revision numbers were found above:
  r30164 --> open-mpi/ompi@ca84ffdbd4

The following Trac tickets were found above:
  Ticket 4155 --> https://svn.open-mpi.org/trac/ompi/ticket/4155
2014-01-22 00:51:03 +00:00
Jeff Squyres
5f17bc3c2c Make the use of PROTECTED in the mpi_f08 module be optional.
Add a configure test to see if the Fortran compiler supports the
PROTECTED keyword.  If it does, use in mpi-f08-types.F90 (via a macro
defined in configure-fortran-output-bottom.h).

This is needed to support the PGI 9 Fortran compiler, which does not
support the PROTECTED keyword.

Note that regardless of whether we want to support the PGI 9 Fortran
compiler + mpi_f08, we need to correctly detect whether PROTECTED
works or not, and then use that determination as a criteria for
building the mpi_f08 module.  Previously, mpi-f08-types.F90 used
PROTECTED unconditionally, and we didn't test for it in configure.  So
if a compiler (e.g., PGI 9) supported everything else but didn't
support PROTECTED, it would try to compile the mpi_f08 stuff and choke
on the use of PROTECTED.

Refs trac:4093

This commit was SVN r30273.

The following Trac tickets were found above:
  Ticket 4093 --> https://svn.open-mpi.org/trac/ompi/ticket/4093
2014-01-13 18:35:42 +00:00
Jeff Squyres
69ecf1670c Remove even more dead Fortran configury.
This configure option was only relevant when we were generating TKR
"use mpi" interfaces for MPI subroutines with choice buffers.  Now
that we aren't, the only interface that needs to accept a choice
buffer is MPI_SIZEOF (which we have to provide).  

And since there's now only several dozen interfaces in the "mpi" TKR
module, there's no reason to not generate ''all'' possible array rank
values (when there were thousands of interfaces, generating 4-vs-7
array ranks per interface per type was a big deal).  The default used
to be 4; now we can just hard-code it to 7, the max possible value for
Fortran 2003 (I think the max was raised ?to 11? in F2008, but let's
not go there for now).

cmr=v1.7.5:reviewer=dgoodell:subject=Remove even more dead Fortran configury

This commit was SVN r30257.
2014-01-11 14:06:59 +00:00
Jeff Squyres
751aa195e9 Similar to r30244, make the libmpi_usempif08 Fortran library also
LIBADD libmpi.la

cmr=v1.7.4:reviewer=brbarret:subject=Add libmpi to libmpi_usempif08_LIBADD

This commit was SVN r30245.

The following SVN revision numbers were found above:
  r30244 --> open-mpi/ompi@7015343951
2014-01-10 21:33:10 +00:00
Jeff Squyres
7015343951 Make the Fortran libraries also LIBADD libmpi.la (libmpi_usempi for
TKR LIBADDs libmpi_mpifh; there	is no library for libmpi_usempi	ignore
TKR).

Refs trac:4085

This commit was SVN r30244.

The following Trac tickets were found above:
  Ticket 4085 --> https://svn.open-mpi.org/trac/ompi/ticket/4085
2014-01-10 21:30:58 +00:00
Jeff Squyres
776f6144af Part 2/companion to r30169: remove Fortran TKR interfaces for MPI
subroutines with choice buffers.

Refs trac:4065

This commit was SVN r30170.

The following SVN revision numbers were found above:
  r30169 --> open-mpi/ompi@759ee33fd4

The following Trac tickets were found above:
  Ticket 4065 --> https://svn.open-mpi.org/trac/ompi/ticket/4065
2014-01-09 02:23:20 +00:00
Jeff Squyres
759ee33fd4 Per thread starting here:
http://www.open-mpi.org/community/lists/users/2014/01/23327.php

Revert the Fortran mpi module default size to "small", meaning that we
won't provide interfaces for MPI subroutines that take a choice buffer
any more.  The short version is that MPI-3 p610:34-41 disallows it.

This commit simply removes all these subroutines from the build
process (i.e., remove them from nodist_libmpi_usempi_la_SOURCES).
Since MPI-3 actually forbids providing these interfaces, I'll do a
second commit to actually remove all the scripts and associated
Makefile.am junk.

cmr=v1.7.4:reviewer=dgoodell:subject=Remove choice buffer interfaces from Fortran mpi module

This commit was SVN r30169.
2014-01-09 01:33:13 +00:00
Jeff Squyres
ca84ffdbd4 Need to have BIND(C) on the callback interfaces. Reviewed/confirmed
by Tobias Burnus.

Refs trac:4058.

This commit was SVN r30164.

The following Trac tickets were found above:
  Ticket 4058 --> https://svn.open-mpi.org/trac/ompi/ticket/4058
2014-01-08 23:12:41 +00:00
Jeff Squyres
36cca10042 Thanks to a reminder from Tobias Burunus, commit support for the
upcoming GCC/gfortran 4.9's ignore TKR interface.

This was originally committed in a side mercurial repo, but I sadly
completely forgot about it until Tobias reminded me.

cmr=v1.7.5:reviewer=dgoodell:subject=Add support for gfortran 4.9 Fortran ignore TKR

This commit was SVN r30152.
2014-01-08 03:46:27 +00:00
Brian Barrett
8b778903d8 Fix longstanding issue with our multi-project support. Rather than using
pkg{data,lib,includedir}, use our own ompi{data,lib,includedir}, which is
always set to {datadir,libdir,includedir}/openmpi.  This will keep us from
having help files in prefix/share/open-rte when building without Open MPI,
but in prefix/share/openmpi when building with Open MPI.

This commit was SVN r30140.
2014-01-07 22:11:15 +00:00
Oscar Vega-Gisbert
c9b7ea6d1a Comm.reduceLocal: add missing offset artifact
This commit was SVN r30108.
2014-01-02 21:57:48 +00:00
Oscar Vega-Gisbert
795131fc59 javadoc: remove old references to offset
This commit was SVN r30102.
2014-01-01 21:40:27 +00:00
Jeff Squyres
1448522d15 In an MPI_IBCAST, we cannot shortcut if there's only 1 process.
cmr=v1.7.4:reviewer=brbarret:subject=Fix IBCAST for COMM_SELF
-This line, and those below, will be ignored--

M    c/ibcast.c

This commit was SVN r30054.
2013-12-22 22:55:58 +00:00
Ralph Castain
31248c0985 Correctly add support for the "env" MPI_Info key during comm_spawn, update the "map-by", "rank-by", and "bind-to" Info key behaviors to match the new mapping/ranking/binding system, and update all docs and comments to match.
Fix comm_spawn on a single host - with the new default mapping scheme, we were incorrectly computing the number of procs to put on the node.

Refs trac:4003

This commit was SVN r30033.

The following Trac tickets were found above:
  Ticket 4003 --> https://svn.open-mpi.org/trac/ompi/ticket/4003
2013-12-20 20:42:39 +00:00
Jeff Squyres
4739850931 As reported by Paul Hargrove
(http://www.open-mpi.org/community/lists/devel/2013/12/13521.php),
OpenBSD-5 #define's MIN and MAX, so we need to #undef them.

cmr=v1.7.4:reviewer=rhc:subject=undef MIN and MAX for OpenBSD-5

This commit was SVN r30007.
2013-12-20 11:40:59 +00:00
Oscar Vega-Gisbert
97fc83e29e Remove references to pinning support
This commit was SVN r29802.
2013-12-04 22:40:26 +00:00
Oscar Vega-Gisbert
da84609091 Update Javadoc
This commit was SVN r29713.
2013-11-14 22:18:45 +00:00
Oscar Vega-Gisbert
73fc5d2b3a Update Javadoc
This commit was SVN r29710.
2013-11-14 21:19:16 +00:00
Jeff Squyres
684dc2f849 Don't use the hard-coded name libmpi.so -- instead, use
libmpi.<OPAL_DYN_LIB_SUFFIX>, where OPAL_DYN_LIB_SUFFIX was determined
by configure.

Thanks to Ömer Demirel for reporting the issue.

Refs trac:3905.

This commit was SVN r29676.

The following Trac tickets were found above:
  Ticket 3905 --> https://svn.open-mpi.org/trac/ompi/ticket/3905
2013-11-13 03:25:18 +00:00
Jeff Squyres
8aaa15c0ef Remove a line that looks like a copy-n-paste error.
This line results in a compile error when you configure thusly:

  ./configure CC=icc CXX=icpc FC=ifort FCFLAGS=-i8

cmr=v1.7.4:reviewer=hjelmn:subject=fix Fortran compile with -i8

This commit was SVN r29602.
2013-11-05 04:17:29 +00:00
Jeff Squyres
4160c37a4b Fix an ORTE -> OPAL name change that was missed in r29530.
This commit was SVN r29595.

The following SVN revision numbers were found above:
  r29530 --> open-mpi/ompi@588e7ce974
2013-11-05 03:29:26 +00:00
Nathan Hjelm
d34a4300b8 Fix various bugs in mca_base_pvar.
Fixes:

 - Segmentation fault when using watermark variables.

 - Segmentation fault when using a handle bound to a no longer valid
   performance variable.

 - Incorrect return codes from MPI_T_pvar_* functions.

cmr=v1.7.4:reviewer=jsquyres

This commit was SVN r29481.
2013-10-23 15:47:15 +00:00
Jeff Squyres
506d0e96f4 Fix the IN_PLACE detection for Fortran SCATTER and SCATTERV.
Thanks to Charles Gerlach for identifying the issue.

Oddly, this issue exists in trunk and v1.7, but ''not'' in the v1.6
tree (!).

cmr=v1.7.4:reviewer=hjelmn

This commit was SVN r29463.
2013-10-22 14:55:17 +00:00
Jeff Squyres
2d7d7ab731 Absoft caught that bind(c) functions can't have OPTIONAL dummy arguments.
Also, removed an MPI_Aint snuck through (which is a C type, not a Fortran
type).  Oddly, the Intel compiler complained about neither of these
issues.  :-\

This commit was SVN r29411.
2013-10-09 14:29:34 +00:00
Jeff Squyres
0d093176e1 Add missing .so version numbers for libmpi_usempif08.so.
cmr=v1.7.3:reviewer=rhc:subject=Add missing libmpi_usempif08 shared lib

This commit was SVN r29401.
2013-10-08 16:20:12 +00:00
Jeff Squyres
a3606c4029 Add weak symbol #defines.
Fixes compile errors if you compile --without-weak-symbols.

This commit was SVN r29396.
2013-10-08 14:54:40 +00:00