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Jeff Squyres
b738fa295d
Merge pull request #6796 from orivej/fix-tcp_component_close-segfault 
Fix oob_tcp tcp_component_close segfault with active listeners
 2019-07-08 18:13:52 -04:00
Ralph Castain
1eb6dda404
Merge pull request #6781 from orivej/ORTE_FORCED_TERMINATE 
Fix ORTE_FORCED_TERMINATE message
 2019-07-08 12:13:43 -07:00
Gilles Gouaillardet
66bb26c7a5
Merge pull request #6798 from ggouaillardet/topic/man_allgather 
man: fix MPI_Allgather[v] man pages
 2019-07-08 13:50:12 +09:00
Gilles Gouaillardet
db760c508d man: fix MPI_Allgather[v] man pages 
- remove incorrect reference to MPI_ROOT
 - fix MPI_IN_PLACE description

no code change

[skip ci]

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2019-07-08 13:45:35 +09:00
Gilles Gouaillardet
c2d35aaadc
Merge pull request #6790 from ggouaillardet/topic/ompi_comm_spawn_f 
fortran/mpif-h: correctly handle array_of_errcodes in ompi_comm_spawn…
 2019-07-08 09:06:21 +09:00
Orivej Desh
78b7e342bd Fix oob_tcp tcp_component_close segfault with active listeners 
oob_tcp in non-HNP mode shares libevent event_base with oob_base [1].
orte_oob_base_close calls:
(1) oob_tcp component_shutdown, then
(2) opal_progress_thread_finalize, then
(3) oob_tcp tcp_component_close [2].
opal_progress_thread_finalize calls tracker_destructor [3] that frees the
event_base [4]. If any oob_tcp event listeners are active at this time, oob_tcp
will crash trying to delete them at [5] [6].

This change moves oob_tcp event listener cleanup from component_close to
component_shutdown so that it happens before the event_base is freed.

[1] https://github.com/open-mpi/ompi/blob/v4.0.1/orte/mca/oob/tcp/oob_tcp_listener.c#L160
[2] https://github.com/open-mpi/ompi/blob/v4.0.1/orte/mca/oob/base/oob_base_frame.c#L95
[3] https://github.com/open-mpi/ompi/blob/v4.0.1/opal/runtime/opal_progress_threads.c#L232
[4] https://github.com/open-mpi/ompi/blob/v4.0.1/opal/runtime/opal_progress_threads.c#L65
[5] https://github.com/open-mpi/ompi/blob/v4.0.1/orte/mca/oob/tcp/oob_tcp_component.c#L192
[6] https://github.com/open-mpi/ompi/blob/v4.0.1/orte/mca/oob/tcp/oob_tcp_listener.c#L955

Signed-off-by: Orivej Desh <orivej@gmx.fr>
 2019-07-04 20:45:47 +00:00
Nysal Jan K A
5d51b2310d
Merge pull request #6791 from nysal/ucx_maxtag_fix 
pml/ucx: Fix the max tag and context id values
 2019-07-03 19:04:39 +05:30
Nysal Jan K.A
fe4ef147f8 pml/ucx: Fix the max tag and context id values 
Signed-off-by: Nysal Jan K.A <jnysal@in.ibm.com>
 2019-07-03 14:33:01 +05:30
Gilles Gouaillardet
07830d05a7 fortran/mpif-h: correctly handle array_of_errcodes in ompi_comm_spawn[_multiple]_f 
Since array_of_errcodes is only allocated when MPI_ERRCODES_IGNORE is not used,
it should not be cleaned when MPI_ERRCODES_IGNORE is used.

Correctly allocate array_of_errcodes with the right size (e.g. maxprocs).

Thanks Gyevi-Nagy Laszlo for reporting this issue.

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2019-07-03 09:53:46 +09:00
Geoff Paulsen
f1b2a09675
Merge pull request #6649 from devreal/rdma-fetchop-local 
OSC rdma: make sure accumulating in shared memory is safe
 2019-06-28 14:46:21 -05:00
bosilca
7005e46eed
Merge pull request #6782 from ggouaillardet/topic/neighbor_alltoallv 
mpi/c: fix param checks in [I]Neighbor_alltoall{v,w}
 2019-06-28 11:02:18 -04:00
Gilles Gouaillardet
5655d64bd3 mpi/c: fix param checks in [I]Neighbor_alltoall{v,w} 
do not check some input parameters when an {in,out}degree is zero

Thanks Junchao Zhang for analyzing and reporting this issue.

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2019-06-28 13:39:28 +09:00
Orivej Desh
de522545c0 Fix ORTE_FORCED_TERMINATE message 
The format string expects to see the file and line before the error text and code.

Signed-off-by: Orivej Desh <orivej@gmx.fr>
 2019-06-28 00:46:55 +00:00
Gilles Gouaillardet
5cb393292e
Merge pull request #6780 from ggouaillardet/topic/pmix_refresh 
pmix/pmix4x: refresh to the latest PMIx master
 2019-06-27 03:43:44 +02:00
Gilles Gouaillardet
63aa156bb0 pmix/pmix4x: refresh to the latest PMIx master 
refresh to pmix/pmix@99971222ce

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2019-06-27 09:35:49 +09:00
Gilles Gouaillardet
f1ae036466
Merge pull request #6771 from ggouaillardet/topic/pmix_refresh 
pmix/pmix4x: refresh to the latest PMIx master
 2019-06-24 04:12:24 +02:00
Gilles Gouaillardet
5679a88867 pmix/pmix4x: refresh to the latest PMIx master 
refresh to pmix/pmix@f67efc835c

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2019-06-24 10:17:23 +09:00
Artem Polyakov
6433da7ba8
Merge pull request #6754 from artpol84/osc/fixes_all 
OSC/UCX: Fix early cleanup + race conditions
 2019-06-21 18:45:37 -07:00
Artem Polyakov
6678ac0f55 osc/ucx: Fix possible win creation/destruction race condition 
To avoid fully initializing the osc/ucx component for MPI application
that are not using One-Sided functionality, the initialization happens
at the first MPI window creation.

This commit ensures atomicity of global state modifications.

Signed-off-by: Artem Polyakov <artpol84@gmail.com>
 2019-06-20 09:05:03 -07:00
Artem Polyakov
0857742624 osc/ucx: Fix worker pool finalization 
Signed-off-by: Artem Polyakov <artpol84@gmail.com>
 2019-06-20 09:05:03 -07:00
Ralph Castain
fd27d76130
Merge pull request #6764 from rhc54/topic/flux 
Fix finalize of flux component
 2019-06-19 05:58:48 -07:00
Ralph Castain
d4070d5f58
Fix finalize of flux component 
Per patches from @SteVwonder and @garlick

Signed-off-by: Ralph Castain <rhc@pmix.org>
 2019-06-18 21:14:04 -07:00
Nathan Hjelm
560886f095
Merge pull request #6746 from devreal/osc_winalloc_err 
OSC rdma win allocate: propagate errors to avoid deadlocks
 2019-06-18 17:57:53 -07:00
Edgar Gabriel
d621e3f0bb
Merge pull request #6759 from haraldkl/ompi_aggregators-cost_calc_intfix 
Suggestion to fix division by zero in file view.
 2019-06-18 09:55:11 -05:00
Geoffrey Paulsen
54a286ee9d Revert "ompi_info: report MPI1 compat is disabled" 
This reverts commit 61ccc653020a4f7821eeaf022586f17037b821a0.

Signed-off-by: Geoffrey Paulsen <gpaulsen@us.ibm.com>
 2019-06-14 13:22:21 -05:00
Geoffrey Paulsen
76dfaceedc Revert "configury: Remove --enable-mpi1-compatibility" 
This reverts commit 6f904aff2c5c791af55223a9db56c5ce2fed53ef.

Signed-off-by: Geoffrey Paulsen <gpaulsen@us.ibm.com>
 2019-06-14 13:22:21 -05:00
Geoffrey Paulsen
ca4b70913e Revert "man: remove man pages of removed MPI1 subroutines" 
This reverts commit 26c1b833c70f27153d245f60216fd1df41e53b8d.

Signed-off-by: Geoffrey Paulsen <gpaulsen@us.ibm.com>
 2019-06-14 13:22:21 -05:00
Geoffrey Paulsen
ed9a670074 Revert "mpi.h.in: delete removed MPI1 functions/datatypes (API change!)" 
This reverts commit a6d6be2853488cfb20128f97b381b3c94a921cd7.

Signed-off-by: Geoffrey Paulsen <gpaulsen@us.ibm.com>
 2019-06-14 13:22:21 -05:00
Geoffrey Paulsen
5cc0141675 Revert "MPI_Type_get_envelope: remove MPI-1 deleted names" 
This reverts commit 65eb118e087b0bdaa9c92a12eba151eb30994590.

Signed-off-by: Geoffrey Paulsen <gpaulsen@us.ibm.com>
 2019-06-14 13:22:21 -05:00
Geoffrey Paulsen
e036941ab5 Revert "mpi.h: remove MPI_UB/MPI_LB when not enabling MPI-1 compat" 
This reverts commit 7223334d4dc1225d49cd2c63714870c3a04ad953.

Signed-off-by: Geoffrey Paulsen <gpaulsen@us.ibm.com>
 2019-06-14 13:22:21 -05:00
Geoffrey Paulsen
6de263fc29 Revert "mpi: make C++ bindings compile when MPI-1 compat is disabled" 
This reverts commit b323655809d514db4092b9beb40c88eb52406fa6.

Signed-off-by: Geoffrey Paulsen <gpaulsen@us.ibm.com>
 2019-06-14 13:22:21 -05:00
Harald Klimach
e222a04ae5 Suggestion to fix division by zero in file view. 
In common_ompi_aggregators calc_cost routine:
do not cast the real division to an int intermediately.
This patch removes the obsolete int variable c and assigns
the result of the P_a/P_x division directly to n_as.

With the intermediate int c variable, n_as gets 0 if P_a < P_x,
resulting in a division by 0 when computing n_s.

Signed-off-by: Harald Klimach <harald.klimach@uni-siegen.de>
 2019-06-13 18:47:32 +02:00
Jeff Squyres
7c3aeb3061
Merge pull request #6686 from alex-anenkov/coll-iallreduce-recursivedoubling 
coll/libnbc: add recursive doubling algorithm for MPI_Iallreduce
 2019-06-10 10:09:51 -04:00
Gilles Gouaillardet
80e0ac7379
Merge pull request #6751 from ggouaillardet/topic/pmix_refresh 
pmix/pmix4x: refresh to the latest PMIx master
 2019-06-10 16:47:21 +09:00
Gilles Gouaillardet
d9326ff2ca pmix/pmix4x: refresh to the latest PMIx master 
refresh to pmix/pmix@186dca196c

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2019-06-10 15:17:43 +09:00
Yossi Itigin
a46e5da3ca
Merge pull request #6744 from brminich/topic/all2all_linear_sync_fix 
COLL/BASE: Fix linear sync all2all
 2019-06-09 21:23:38 +03:00
Joseph Schuchart
8f27cc26d9 OSC rdma win allocate: synchronize error codes across shared memory group 
Signed-off-by: Joseph Schuchart <schuchart@hlrs.de>
 2019-06-07 11:03:21 +02:00
KAWASHIMA Takahiro
85c3311b7d
Merge pull request #6726 from yanagibashi/pr/add-f08-procedure-names 
mpiext/pcollreq: Add `_f08` to procedure names
 2019-06-07 09:10:58 +09:00
Mikhail Brinskii
79006f4e5a COLL/BASE: Fix linear sync all2all 
Signed-off-by: Mikhail Brinskii <mikhailb@mellanox.com>
 2019-06-06 19:22:42 +03:00
Yossi Itigin
8535dd570b
Merge pull request #6732 from dmitrygladkov/topic/pml/ucx_init 
PML/UCX: Don't destroy UCP worker if it wasn't created
 2019-06-06 10:41:33 +03:00
Geoff Paulsen
4f5e96d1f0
Merge pull request #6724 from sam6258/shmem_wait_types 
shmem/c: Fix shmem type for calls to shmem_test and shmem_wait_until …
 2019-06-05 12:37:34 -05:00
KAWASHIMA Takahiro
2b856573b2
Merge pull request #6699 from t-kurita/pr/java-alltoallw-arrays 
java: Fix compilation error in allToAllw using Java arrays
 2019-06-04 11:33:17 +09:00
Dmitry Gladkov
c864ca51d2 PML/UCX: Don't destroy UCP worker if it wasn't created 
Signed-off-by: Dmitry Gladkov <dmitrygla@mellanox.com>
 2019-06-03 10:49:36 +03:00
Tsubasa Yanagibashi
3148b0cfaa mpiext/pcollreq: Add _f08 to procedure names 
The procedure names don't contain "_f08" of Fortran 2008 bindings of
Persistent Collective Operations(mpiext/pcollreq/use-mpi-f08).
This fix adds "_f08" to the procedure names of pcollreq/use-mpi-f08,
same as other Fortran 2008 routines in `ompi/mpi/fortran/use-mpi-f08/mod`.

Signed-off-by: Tsubasa Yanagibashi <fj2505dt@aa.jp.fujitsu.com>
 2019-05-31 15:22:42 +09:00
bosilca
e3eb6b5897
Merge pull request #6683 from bosilca/topic/spc_init 
Fixed SPC/MPI_T initialization error.
 2019-05-30 17:50:58 -04:00
Scott Miller
ca59cabc67
shmem/c: Fix shmem type for calls to shmem_test and shmem_wait_until with [u]int32_t and [u]int64_t 
Signed-off-by: Scott Miller <scott.miller1@ibm.com>
 2019-05-30 17:20:30 -04:00
markalle
008ab98946
Merge pull request #6531 from markalle/patcher_additions 
shmat/shmdt additions for patcher
 2019-05-30 12:16:05 -05:00
Nathan Hjelm
8961daae4a opal/atomic: work around memory barrier bug in older gcc 
This commit fixes an issue seem with some older versions of gcc
(verified to occur in gcc 6.x) where on x86_64 systems the
acquire memory barrier in C11 atomics acts as a no-op. On these
systems the three memory barriers should all be equivalent.

This is related to the error fixed in open-mpi/ompi@30119ee.

References #6655.

Signed-off-by: Nathan Hjelm <hjelmn@google.com>
 2019-05-30 06:58:28 -07:00
Yossi Itigin
5f37fe654a
Merge pull request #6694 from hoopoepg/topic/pci-flush-on-quiet 
SPML/UCX: added synchronized flush on quiet
 2019-05-29 11:19:59 +03:00
George Bosilca
6c75334162
Use the correct counter name in the example. 
Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
 2019-05-29 00:54:56 -04:00