* Always enable "const" in the wrapper functions, even though Open MPI
doesn't advertise itself as MPI-3.0 yet
* Remove CONST from MPI_Type_hindexed, MPI_Type_struct (because
they're deprecated functions, and never had const added to them)
This commit was SVN r29280.
collective to the mca_coll_base_comm_coll_t structure increased the size
of the ompi_communicator_t over the limit of the predefined padding
(PREDEFINED_COMMUNICATOR_PAD).
This fix is a temporary fix to allow the trunk to compile. Unfortuantely
it breaks the compatibility with all other versions of Open MPI. Please
read the comment in this header file for a more complete explanation.
This commit was SVN r29277.
The following SVN revision numbers were found above:
r29265 --> open-mpi/ompi@c5596548b2
Create a new required key in the OMPI layer for retrieving a "node id" from the database. ALL RTE'S MUST DEFINE THIS KEY. This allows us to compute locality in the MPI layer, which is necessary when we do things like intercomm_create.
cmr:v1.7.4:reviewer=rhc:subject=Cleanup handling of modex data
This commit was SVN r29274.
arrays.
The MPI 3.0 standard added const to all in buffers in the C bindings. This
commit adds the const keyword and in most cases casts const away. We will
eventually should go through and update the various interfaces (coll, pml,
io, etc) to take the const keyword. The group, comm, win, and datatype
interfaces have been updated with const.
cmr=v1.7.4:ticket=trac:3785:reviewer=jsquyres
This commit was SVN r29266.
The following Trac tickets were found above:
Ticket 3785 --> https://svn.open-mpi.org/trac/ompi/ticket/3785
Blocking versions are simple linear algorithms implemented in coll/basic. Non-
blocking versions are from libnbc 1.1.1. All algorithms have been tested with
simple test cases.
cmr=v1.7.4:reviewer=jsquyres
This commit was SVN r29265.
Prevent frag from being freed out from under us in the case
the PML callback routine calls usnic_free(). We accomplish this
by delaying decrement of sf_bytes_to_ack until after the callback is
performed, since sf_bytes_to_ack == 0 is condition of freeing the frag.
Fixes Cisco bug CSCuj45094.
Authored-by: Reese Faucette <rfaucett@cisco.com>
cmr=v1.7.3
This commit was SVN r29264.
Includes all MPI functions supported by Open MPI, including MPI-3
functions (as of about 2 weeks ago). Many changes compared to the
prior generation of Java bindings; not much is left from the prior
generation, actually. The changes include (but are not limited to):
* Add support for more than just a subset of MPI-1 functions
* Use typical Java case for symbol names
* Support Java Direct buffers (giving darn-near "native C"
performance)
* Support "type struct" better than the prior generation
* Make more of an effort for the Java bindings to be a thin layer
over the back-end C bindings
* ...and more
A proper README with more information about what is supported, how to
use these bindings, etc. will be committed shortly.
This commit was SVN r29263.
This commit changes the underlying opal complex datatypes to match the
C99 types: float _Complex, double _Complex, and long double _Complex. The
fortran and C++ types now are aliases to these basic types instead of
structure types. The operators in ompi/mca/op/base now work on only the
C99 types and the fortran types use these operators if the fortran type
matches a C complex type (this should almost always be the case.)
C99 is not is use in both the datatype and operator code and should make
the code both cleaner and much less fragile.
This commit was SVN r29193.
of MPI_Alltoall.
- add support for MPI_IN_PLACE in the self collective component.
- fix the extent usage in the tuned collective component.
- correctly use the peer counts instead of local - add support for MPI_IN_PLACE in the self collective component.
- fix the extent usage in the tuned collective component.
- correctly use the peer counts instead of local.
Thanks to Fujitsu for the patch.
This commit was SVN r29187.
MSGDEBUG2 now means "print a one-liner for all PML calls into BTL, and
also when BTL calls PML with a recv completion (not send completions)"
MSGDEBUG1 means print more internal gory detail
MSGDEBUG is gone, replaced by MSGDEBUG1
In the process also found that PUT_DEST style fragments could
potentially be leaked in usnic_free() since send_fragment tests were
being applied to see if it was eligible to be freed.
This commit was SVN r29185.
changes required to support MPI_Bsend(). Introduces concept of
attaching a buffer to a large segment that the PML can scribble into and
we will send from. The reason we don't use a pinned buffer and send
directly from that is that usnic_verbs does not (yes) support num_sge>1
for regular sends. This means the data gets copied twice, but that is
unavoidable.
changed the logic in handle_large_send to be more sensible
Incorporated David's review comments
This commit was SVN r29184.
Do not assume that the "size" passed to alloc_send() will be the same as
the size of the message the resulting fragment will hold when
usnic_send() is called. This means usnic_send()/usnic_put() can never
trust any pre-computed size values, and are only allowed to look at the
lengths and pointers of the elements in the desc SG list.
This commit was SVN r29183.
- tag needs to be sent in *our* header, not the PML header
- usnic_alloc() should return smaller value if too much data requested
- be careful about callbacks vs removing items from lists
(we need to remove from outr lists *before* the callback)
- improve send callback handling
- add some more MSGDEBUG2 logging and cleanup
This commit was SVN r29181.
The intercomm "merge" function can create a linkage between procs that was not reflected anywhere in a modex, and so at least some of the procs in the resulting communicator don't know how to talk to some of the new communicator's peers.
For example, consider the case where:
1. parent job A comm_spawns a process (job B) - these processes exchange modex and can communicate
2. parent job A now comm_spawns another process (job C) - again, these can communicate, but the proc in C knows nothing of B
3. do an intercomm merge across the communicators created by the two comm_spawns. This puts B and C into the same communicator, but they know nothing about how to talk to each other as they were not involved in any exchange of contact info. Hence, collectives on that communicator now fail.
This fix adds an API to the ompi/dpm framework that (a) exchanges the modex info across the procs in the merge to ensure all procs know how to communicate, and (b) calls add_procs to give the btl's a chance to select transports to any new procs.
cmr:v1.7.3:reviewer=jsquyres
This commit was SVN r29166.
The following Trac tickets were found above:
Ticket 2904 --> https://svn.open-mpi.org/trac/ompi/ticket/2904
The FREE_LIST_*_MT stuff was introduced on the SVN trunk in r28722
(2013-07-04), but so far, has not been merged into the v1.7 branch yet
(2013-09-06). So put it in its own #ifdef, rather than defining it
based on OMPI_MAJOR_VERSION/OMPI_MINOR_VERSION.
This commit was SVN r29148.
The following SVN revision numbers were found above:
r28722 --> open-mpi/ompi@c9e5ab9ed1
The Cisco-maintained v1.6 port of the usnic BTL has diverged from the
upstream trunk and v1.7 branches. This commit adjusts the trunk to more
closely match the v1.6 branch to simplify future merging and
cherry-picking.
The usnic MCA parameters also need work on this side.
Should be included in usnic v1.7.3 roll-up CMR (refs trac:3760)
This commit was SVN r29138.
The following Trac tickets were found above:
Ticket 3760 --> https://svn.open-mpi.org/trac/ompi/ticket/3760
The fix for the HPL SEGV was incorrect because it assumed the
prepare_src() routine was always allowed to return "bytes processed"
less than the requested "bytes to send". It turns out this is only true
if the convertor is what limits the size, we are not allowed to limit
the data sent for our own reasons, else we break login in the upper
layers.
This means we need to learn the number of bytes out of the size
requested the convertor will give us, no matter how big the size is.
Unfortunately, this is a destructive test, and (currently) the only way to
learn that number is to actually have the convertor copy the data out into
buffers.
This change implements this, copying the entire data out into a chain of
send segments which are attached to the large send fragment. Now we can
always return the proper size value to the PML.
Fixes Cisco bug CSCuj08024
Authored-by: Reese Faucette <rfaucett@cisco.com>
Should be included in usnic v1.7.3 roll-up CMR (refs trac:3760)
This commit was SVN r29137.
The following Trac tickets were found above:
Ticket 3760 --> https://svn.open-mpi.org/trac/ompi/ticket/3760
Authored-by: Reese Faucette <rfaucett@cisco.com>
Should be included in usnic v1.7.3 roll-up CMR (refs trac:3760)
This commit was SVN r29136.
The following Trac tickets were found above:
Ticket 3760 --> https://svn.open-mpi.org/trac/ompi/ticket/3760
Should be included in usnic v1.7.3 roll-up CMR (refs trac:3760)
This commit was SVN r29135.
The following Trac tickets were found above:
Ticket 3760 --> https://svn.open-mpi.org/trac/ompi/ticket/3760
Should be included in usnic v1.7.3 roll-up CMR (refs trac:3760)
This commit was SVN r29134.
The following Trac tickets were found above:
Ticket 3760 --> https://svn.open-mpi.org/trac/ompi/ticket/3760
- round segment buffer allocation to cache-line
- split some routines into an inline fast section and a called
slower section
- introduce receive fastpath in component_progress that:
o returns immediately if there is a packet available on priority
queue and fastpath is enabled
o disables fastpath for 1 time after use to provide fairness to
other processing
o defers receive buffer posting
o defers bookeeping for receive until next call
to usnic_component_progress
Authored-by: Reese Faucette <rfaucett@cisco.com>
Should be included in usnic v1.7.3 roll-up CMR (refs trac:3760)
This commit was SVN r29133.
The following Trac tickets were found above:
Ticket 3760 --> https://svn.open-mpi.org/trac/ompi/ticket/3760
Without this, an `--enable-debug` build would hit an assertion in the
list code when run under valgrind with `--malloc-fill=0xff` or any other
case where malloc returned non-zeroed buffers.
Also allow the normal OBJ_ machinery to handle the constructor
invocation ordering for us instead of doing it by hand (which could have
led to future bugs).
Reviewed-by: jsquyres@cisco.com
cmr=v1.7.4
Depends on trunk functionality in r29095 and r29096. Refs trac:3740,#3741.
This commit was SVN r29127.
The following SVN revision numbers were found above:
r29095 --> open-mpi/ompi@d1b5940e97
r29096 --> open-mpi/ompi@a552921171
The following Trac tickets were found above:
Ticket 3740 --> https://svn.open-mpi.org/trac/ompi/ticket/3740
configure-time dynamic allocation of flags. The net result for platforms
which only support BTL-based communication is a reduction of 8*nprocs bytes
per process. Platforms which support both MTLs and BTLs will not see
a space reduction, but will now be able to safely run both the MTL and BTL
side-by-side, which will prove useful.
This commit was SVN r29100.
The usnic BTL now builds cleanly under `--enable-picky` when `MSGDEBUG1`
is set.
Reviewed-by: jsquyres
cmr=v1.7.4:reviewer=jsquyres
This commit was SVN r29097.
The free list code called the constructor for each object it
slab allocated in ompi_free_list_grow. This permits free list-managed
elements to safely allocate/deallocate resources in their
constructors/destructors without leaking.
It's probably best to let this soak on the trunk a little while before
moving it over to v1.7.
Reviewed-by: bosilca
cmr=v1.7.4:reviewer=bosilca
This commit was SVN r29096.
Calling OMPI_REQUEST_INIT puts the request into an _INACTIVE state
instead of an _INVALID state, which we don't want if it's been
simply been constructed, e.g., in a free_list. Without this change a
future change to call destructors at free list destruction time will
result in request dtor state assertion failures.
Reviewed-by: bosilca
cmr=v1.7.4:reviewer=bosilca
This commit was SVN r29095.
osc_pt2pt_data_move.c: In function 'ompi_osc_pt2pt_sendreq_recv_accum_long_cb':
osc_pt2pt_data_move.c:643:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
osc_rdma_data_move.c: In function 'ompi_osc_rdma_control_send_cb':
osc_rdma_data_move.c:1312:37: warning: variable 'header' set but not used [-Wunused-but-set-variable]
This commit was SVN r29092.
endpoint_rfstart was being initialized from a value which was not yet
set. Also ensure that rfstart is a valid index in the range
0..WINDOW_SIZE-1, since it is used as the index into endpoint_rcvd_segs,
which has WINDOW_SIZE elements.
Without this change there is significant risk of memory corruption or
segfaults, resulting in hangs or crashes, if malloc ever returns us a
value >=WINDOW_SIZE (4096). Right now we seem to be getting lucky that
the malloc is returning zero-pages to us when we are allocating endpoint
structures (possibly because the freelist performs a single large
allocation for all endpoints).
Fixes Cisco bug CSCui88781.
Reviewed-by: rfaucett@cisco.com
Reviewed-by: jsquyres@cisco.com
cmr=v1.7.3:reviewer=jsquyres
This commit was SVN r29075.
and improve the behavior of ompi_info.
This commit changes the default behavior of ompi_info --all when a
level is not specified. Instead of assuming level 1 in this case we
now assume level 9. This change is due to feedback from the community
after the introduction of the --level option.
I also added a new option: --selected-only. This option will limit the
displayed variables to components that can be selected (ie. if there
is a selection parameter set-- btl self,sm)
cmr=v1.7.3:reviewer=jsquyres
This commit was SVN r29070.
is enabled and fix a bug in the handling of watermark performance
variables.
cmr=v1.7.3:ticket=trac:3725:reviewer=jsquyres
This commit was SVN r29068.
The following Trac tickets were found above:
Ticket 3725 --> https://svn.open-mpi.org/trac/ompi/ticket/3725
option to autodetect whether fragmentation should be enabled
cmr=v1.7.3:ticket=trac:3717
This commit was SVN r29065.
The following Trac tickets were found above:
Ticket 3717 --> https://svn.open-mpi.org/trac/ompi/ticket/3717
* paccept - establish a persistent listening port for async connect requests
* pconnect - async connect to remote process that has posted a paccept port. Provides a timeout mechanism, and allows the underlying implementation to retry until timeout
* pclose - shuts down a prior paccept posting
Includes example programs paccept.c and pconnect.c in orte/test/mpi. New MPI extension interfaces coming...
This commit was SVN r29063.
Turns out that AC_CHECK_DECLS is one of the "new style" Autoconf
macros that #defines the output to be 0 or 1 (vs. #define'ing or
#undef'ing it). So don't check for "#if defined(..."; just check for
"#if ...".
This commit was SVN r29059.
The following Trac tickets were found above:
Ticket 3730 --> https://svn.open-mpi.org/trac/ompi/ticket/3730
*** THIS RFC INCLUDES A MINOR CHANGE TO THE MPI-RTE INTERFACE ***
Note: during the course of this work, it was necessary to completely separate the MPI and RTE progress engines. There were multiple places in the MPI layer where ORTE_WAIT_FOR_COMPLETION was being used. A new OMPI_WAIT_FOR_COMPLETION macro was created (defined in ompi/mca/rte/rte.h) that simply cycles across opal_progress until the provided flag becomes false. Places where the MPI layer blocked waiting for RTE to complete an event have been modified to use this macro.
***************************************************************************************
I am reissuing this RFC because of the time that has passed since its original release. Since its initial release and review, I have debugged it further to ensure it fully supports tests like loop_spawn. It therefore seems ready for merge back to the trunk. Given its prior review, I have set the timeout for one week.
The code is in https://bitbucket.org/rhc/ompi-oob2
WHAT: Rewrite of ORTE OOB
WHY: Support asynchronous progress and a host of other features
WHEN: Wed, August 21
SYNOPSIS:
The current OOB has served us well, but a number of limitations have been identified over the years. Specifically:
* it is only progressed when called via opal_progress, which can lead to hangs or recursive calls into libevent (which is not supported by that code)
* we've had issues when multiple NICs are available as the code doesn't "shift" messages between transports - thus, all nodes had to be available via the same TCP interface.
* the OOB "unloads" incoming opal_buffer_t objects during the transmission, thus preventing use of OBJ_RETAIN in the code when repeatedly sending the same message to multiple recipients
* there is no failover mechanism across NICs - if the selected NIC (or its attached switch) fails, we are forced to abort
* only one transport (i.e., component) can be "active"
The revised OOB resolves these problems:
* async progress is used for all application processes, with the progress thread blocking in the event library
* each available TCP NIC is supported by its own TCP module. The ability to asynchronously progress each module independently is provided, but not enabled by default (a runtime MCA parameter turns it "on")
* multi-address TCP NICs (e.g., a NIC with both an IPv4 and IPv6 address, or with virtual interfaces) are supported - reachability is determined by comparing the contact info for a peer against all addresses within the range covered by the address/mask pairs for the NIC.
* a message that arrives on one TCP NIC is automatically shifted to whatever NIC that is connected to the next "hop" if that peer cannot be reached by the incoming NIC. If no TCP module will reach the peer, then the OOB attempts to send the message via all other available components - if none can reach the peer, then an "error" is reported back to the RML, which then calls the errmgr for instructions.
* opal_buffer_t now conforms to standard object rules re OBJ_RETAIN as we no longer "unload" the incoming object
* NIC failure is reported to the TCP component, which then tries to resend the message across any other available TCP NIC. If that doesn't work, then the message is given back to the OOB base to try using other components. If all that fails, then the error is reported to the RML, which reports to the errmgr for instructions
* obviously from the above, multiple OOB components (e.g., TCP and UD) can be active in parallel
* the matching code has been moved to the RML (and out of the OOB/TCP component) so it is independent of transport
* routing is done by the individual OOB modules (as opposed to the RML). Thus, both routed and non-routed transports can simultaneously be active
* all blocking send/recv APIs have been removed. Everything operates asynchronously.
KNOWN LIMITATIONS:
* although provision is made for component failover as described above, the code for doing so has not been fully implemented yet. At the moment, if all connections for a given peer fail, the errmgr is notified of a "lost connection", which by default results in termination of the job if it was a lifeline
* the IPv6 code is present and compiles, but is not complete. Since the current IPv6 support in the OOB doesn't work anyway, I don't consider this a blocker
* routing is performed at the individual module level, yet the active routed component is selected on a global basis. We probably should update that to reflect that different transports may need/choose to route in different ways
* obviously, not every error path has been tested nor necessarily covered
* determining abnormal termination is more challenging than in the old code as we now potentially have multiple ways of connecting to a process. Ideally, we would declare "connection failed" when *all* transports can no longer reach the process, but that requires some additional (possibly complex) code. For now, the code replicates the old behavior only somewhat modified - i.e., if a module sees its connection fail, it checks to see if it is a lifeline. If so, it notifies the errmgr that the lifeline is lost - otherwise, it notifies the errmgr that a non-lifeline connection was lost.
* reachability is determined solely on the basis of a shared subnet address/mask - more sophisticated algorithms (e.g., the one used in the tcp btl) are required to handle routing via gateways
* the RML needs to assign sequence numbers to each message on a per-peer basis. The receiving RML will then deliver messages in order, thus preventing out-of-order messaging in the case where messages travel across different transports or a message needs to be redirected/resent due to failure of a NIC
This commit was SVN r29058.
So shift the cutoff param to the MPI layer, and have it solely determine whether or not we call modex_recv on the hostname. If comm_world is of size greater than the cutoff, then we don't automatically retrieve the hostname when we build the ompi_proc_t for a process - instead, we fill the hostname entry on first call to modex_recv for that process.
The param is now "ompi_hostname_cutoff=N", where N=number of procs for cutoff.
Refs trac:3729
This commit was SVN r29056.
The following Trac tickets were found above:
Ticket 3729 --> https://svn.open-mpi.org/trac/ompi/ticket/3729
Commit r27211 added ifdef checks for #define
HAVE_IBV_LINK_LAYER_ETHERNET, which is incorrect. The correct #define
is HAVE_DECL_IBV_LINK_LAYER_ETHERNET. This broke OMPI over iWARP.
This fixes trac:3726 and should be added to cmr:v1.7.3:reviewer=jsquyres
This commit was SVN r29053.
The following SVN revision numbers were found above:
r27211 --> open-mpi/ompi@b27862e5c7
The following Trac tickets were found above:
Ticket 3726 --> https://svn.open-mpi.org/trac/ompi/ticket/3726
* add a new MCA param orte_hostname_cutoff to specify the number of nodes at which we stop including hostnames. This defaults to INT_MAX => always include hostnames. If a value is given, then we will include hostnames for any allocation smaller than the given limit.
* remove ompi_proc_get_hostname. Replace all occurrences with a direct link to ompi_proc_t's proc_hostname, protected by appropriate "if NULL"
* modify the OMPI-ORTE integration component so that any call to modex_recv automatically loads the ompi_proc_t->proc_hostname field as well as returning the requested info. Thus, any process whose modex info you retrieve will automatically receive the hostname. Note that on-demand retrieval is still enabled - i.e., if we are running under direct launch with PMI, the hostname will be fetched upon first call to modex_recv, and then the ompi_proc_t->proc_hostname field will be loaded
* removed a stale MCA param "mpi_keep_peer_hostnames" that was no longer used anywhere in the code base
* added an envar lookup in ess/pmi for the number of nodes in the allocation. Sadly, PMI itself doesn't provide that info, so we have to get it a different way. Currently, we support PBS-based systems and SLURM - for any other, rank0 will emit a warning and we assume max number of daemons so we will always retain hostnames
This commit was SVN r29052.
This creates a really bad scaling behavior. Users have found a nearly 20% launch time differential between mpirun and PMI, with PMI being the slower method. Some of the problem is attributable to poor exchange algorithms in RM's like Slurm and Alps, but we make things worse by calling "get" so many times.
Nathan (with a tad advice from me) has attempted to alleviate this problem by reducing the number of "get" calls. This required the following changes:
* upon first request for data, have the OPAL db pmi component fetch and decode *all* the info from a given remote proc. It turned out we weren't caching the info, so we would continually request it and only decode the piece we needed for the immediate request. We now decode all the info and push it into the db hash component for local storage - and then all subsequent retrievals are fulfilled locally
* reduced the amount of data by eliminating the exchange of the OMPI_ARCH value if heterogeneity is not enabled. This was used solely as a check so we would error out if the system wasn't actually homogeneous, which was fine when we thought there was no cost in doing the check. Unfortunately, at large scale and with direct launch, there is a non-zero cost of making this test. We are open to finding a compromise (perhaps turning the test off if requested?), if people feel strongly about performing the test
* reduced the amount of RTE data being automatically fetched, and fetched the rest only upon request. In particular, we no longer immediately fetch the hostname (which is only used for error reporting), but instead get it when needed. Likewise for the RML uri as that info is only required for some (not all) environments. In addition, we no longer fetch the locality unless required, relying instead on the PMI clique info to tell us who is on our local node (if additional info is required, the fetch is performed when a modex_recv is issued).
Again, all this only impacts direct launch - all the info is provided when launched via mpirun as there is no added cost to getting it
Barring objections, we may move this (plus any required other pieces) to the 1.7 branch once it soaks for an appropriate time.
This commit was SVN r29040.
