- move the sort_iovec operations to fcoll/base
- move set_view_internal to common/ompio
- move set_file_default to common/ompio
- remove io_ompio_sort, not used anymore.
The name of `MPI_INTEGER16` obtained using `MPI_TYPE_GET_NAME`
from Fortran program was incorrect (`MPI_INTEGER8` was obtained)
when `INTEGER*16` is not supported by a compiler.
This bug affects only the Fortran binding because `MPI_INTEGER16`
is not defined in `mpi.h` if a compiler does not support it.
This commit add the following Fortran named constants which are
defined in the MPI standard but are missing in Open MPI.
- `MPI_LONG_LONG` (defined as a synonym of `MPI_LONG_LONG_INT`)
- `MPI_CXX_FLOAT_COMPLEX`
- `MPI_C_BOOL`
And this commit also changes the value of the following Fortran
named constant for consistency.
- `MPI_C_COMPLEX`
`(MPI_C_FLOAT_COMPLEX` is defined as a synonym of this)
Each needs a different solution described below.
For `MPI_LONG_LONG`:
The value of `MPI_LONG_LONG` is defined to have a same value
as `MPI_LONG_LONG_INT` because of the following reasons.
1. It is defined as a synonym of `MPI_LONG_LONG_INT` in
the MPI standard.
2. `MPI_LONG_LONG_INT` and `MPI_LONG_LONG` has a same value
for C in `mpi.h`.
3. `ompi_mpi_long_long` is not defined in
`ompi/datatype/ompi_datatype_module.c`.
For `MPI_CXX_FLOAT_COMPLEX`:
Existing `MPI_CXX_COMPLEX` is replaced with `MPI_CXX_FLOAT_COMPLEX`
bacause `MPI_CXX_FLOAT_COMPLEX` is the right name defined in MPI-3.1
and `MPI_CXX_COMPLEX` is not defined in MPI-3.1 (nor older).
But for compatibility, `MPI_CXX_COMPLEX` is treated as a synonym
of `MPI_CXX_FLOAT_COMPLEX` on Open MPI.
For `MPI_C_BOOL`:
`MPI_C_BOOL` is newly added. The value which `MPI_C_COMPLEX` had
used (68) is assinged for it because the value becomes no longer
in use (described later) and it is a suited position as a datatype
added on MPI-2.2.
For `MPI_C_COMPLEX`:
Existing `MPI_C_FLOAT_COMPLEX` is replaced with `MPI_C_COMPLEX`
and `MPI_C_FLOAT_COMPLEX` is changed to have the same value.
In other words, make `MPI_C_COMPLEX` the canonical name and
make `MPI_C_FLOAT_COMPLEX` an alias of it.
This is bacause the relation of these datatypes is same as
the relation of `MPI_LONG_LONG_INT` and `MPI_LONG_LONG`, and
`MPI_LONG_LONG_INT` and `MPI_LONG_LONG` are implemented like that.
But in the datatype engine, we use `ompi_mpi_c_float_complex`
instead of `ompi_mpi_c_complex` as a variable name to keep
the consistency with the other similar types such as
`ompi_mpi_c_double_complex` (see George's comment in open-mpi/ompi#1927).
We don't delete `ompi_mpi_c_complex` now because it is used in
some other places in Open MPI code. It may be cleand up in the future.
In addition, `MPI_CXX_COMPLEX`, which was defined only in the Open MPI
Fortran binding, is added to `mpi.h` for the C binding.
This commit breaks binary compatibility of Fortran `MPI_C_COMPLEX`.
When this commit is merged into v2.x branch, the change of
`MPI_C_COMPLEX` should be excluded.
configury command line is quoted and made available via the OPAL_CONFIGURE_CLI macro.
it can be retrieved via {orte-info,ompi_info,oshmem_info} -c, or
{orte-info,ompi_info,oshmem_info} --all --parseable | grep ^config:cli:
This commit fixes the undefined `OPAL_MAXHOSTNAMELEN` error
which arises only when `--enable-timing` is specified for
`configure`.
This bug exists only in master branch because the commit 3322347
is not merged into other branches.
This commit expands the OPAL_THREAD macros to include 32- and 64-bit
atomic swap. Additionally, macro declararations have been updated to
include both OPAL_THREAD_* and OPAL_ATOMIC_*. Before this commit the
former was used with add and the later with cmpset.
Signed-off-by: Nathan Hjelm <hjelmn@me.com>
allow for toggling of both control/data progress models.
allow for using FI_AV_TABLE or FI_AV_MAP for av type.
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
This commit fixes typos on the C side of the request-based RMA binding. We
were not returning the request on success but on failure. Thanks to
@alazzaro for reporting and @ggouaillardet, and @vondele for tracking
this down.
Fixes part of open-mpi/ompi#1869
Signed-off-by: Nathan Hjelm <hjelmn@me.com>
This commit introduces a new algorithm for MPI_Comm_split_type. The
old algorithm performed an allgather on the communicator to decide
which processes were part of the new communicators. This does not
scale well in either time or memory.
The new algorithm performs a couple of all reductions to determine the
global parameters of the MPI_Comm_split_type call. If any rank gives
an inconsistent split_type (as defined by the standard) an error is
returned without proceeding further. The algorithm then creates a
communicator with all the ranks that match the split_type (no
communication required) in the same order as the original
communicator. It then does an allgather on the new communicator (which
should be much smaller) to determine 1) if the new communicator is in
the correct order, and 2) if any ranks in the new communicator
supplied MPI_UNDEFINED as the split_type. If either of these
conditions are detected the new communicator is split using
ompi_comm_split and the intermediate communicator is freed.
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
This commit simplifies the communicator context ID generation by
removing the blocking code. The high level calls: ompi_comm_nextcid
and ompi_comm_activate remain but now call the non-blocking variants
and wait on the resulting request. This was done to remove the
parallel paths for context ID generation in preperation for further
improvements of the CID generation code.
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
the coll_array functions are truly only used by the fcoll modules, so move
them to fcoll/base. There is currently one exception to that rule (number of aggreagtors
logic), but that function will be moved in a long term also to fcoll/base.
This commit fixes a bug in the RDMA compare-and-swap implementation
that caused the origin value to always be written even if the compare
should have failed.
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
as reported by Coverity with CIDs 1363349-1363362
Offset temporary buffer when a non zero lower bound datatype is used.
Thanks Hristo Iliev for the report
(cherry picked from commit 0e393195d9)
- correctly handle non commutative operators
- correctly handle non zero lower bound ddt
- correctly handle ddt with size > extent
- revamp NBC_Sched_op so it takes two buffers and matches ompi_op_reduce semantic
- various fix for inter communicators
Thanks Yuki Matsumoto for the report
It was introduced in PR https://github.com/open-mpi/ompi/pull/1228
in particular in commit 041a6a9f53.
Original solution was using "flexible array member" called "mxm_base"
to "fall-through" to the "mxm" send/recv member that located in the
outer structure.
After changing number of elements in "mxm_base" from 0 to 1 we actually
allocating 2 mxm_req_base_t elements which leads to increased overal
size and harms cache performance.
It also brakes "mca_pml_yalla_check_request_state" function.
* Matches the blocking versions of these interfaces
- `iallreduce.c` to match `allreduce.c`
- `ireduce.c` to match `reduce.c`
- `ireduce_scatter.c` to match `reduce_scatter.c`
* Workaround for IMB-NBC benchmark, similar to the workaround
in place for the IMB-MPI1 benchmark for the blocking collectives.
* If hcoll is given a negative priority, but not enabled=0 then
the module is constructed, but then destructed before calling
it's query(). So the previous pointers are not initialized.
If we try to OBJ_RELEASE them in a debug build an assert will fire.
This commit adds some protection against that and initializes
the _module pointers to NULL.
* Print a verbose message if the component was disqualified because of
a negative priority.
* If a disqualified component provided a module, release it.
* Display list of selected components in priority order
- During the process of volunteering collective functions for a
communicator, print the component name and priority. This will
cause the verbose messages to be displayed in reverse priority
order (lowest priority first, up to highest). This is helpful
when determining which collective components are active in which
order for a given communicator.
To see the messages you need the following MCA parameter set to 9
or higher: `-mca coll_base_verbose 9`
* Adjust verbose for commonly needed verbose output from 10 to 9 to
make it easier to access this information.
This commit fixes a hang reported by @nysal which happens when a
request is completed after a sync object is created but before the
sync object can be assigned to the request. In this case we need to
set the sync signaling field to false to ensure WAIT_SYNC_RELEASE does
not hang.
Fixesopen-mpi/ompi#1828
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
This commit makes bml/r2 more restrictive on which endpoints end up in the rdma
endpoint list. Before this commit an endpoint was added if it supported either
put or get. This was done to ensure that endpoints are available for RMA.
Thought it is possible to support put or get endpoints we only currently
support endpoints that have put, get, and amos. bml/r2 now reflects this
support.
Signed-off-by: Nathan Hjelm <hjelmn@me.com>
by avoiding extra atomic exchanges.
Use indices array to mark already completed connections
in the pre-wait loop to avoid extra atomic exchanges
in the after-wait loop.
The OPAL_ENABLE_MULTI_THREADS macro is always defined as 1. This was
causing us to always use the multi-thread path for synchronization
objects. The code has been updated to use the opal_using_threads()
function. When MPI_THREAD_MULTIPLE support is disabled at build time
(2.x only) this function is a macro evaluating to false so the
compiler will optimize out the MT-path in this case. The
OPAL_ATOMIC_ADD_32 macro has been removed and replaced by the existing
OPAL_THREAD_ADD32 macro.
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
This commit fixes a performance regression introduced by the request
rework. We were always using the multi-thread path because
OPAL_ENABLE_MULTI_THREADS is either not defined or always defined to 1
depending on the Open MPI version. To fix this I removed the
conditional and added a conditional on opal_using_threads(). This path
will be optimized out in 2.0.0 in a non-thread-multiple build as
opal_using_threads is #defined to false in that case.
Fixesopen-mpi/ompi#1806
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
Need to increment the total size after checking the local offset not
before. This typo causes large allocations with MPI_Win_allocate() to
fail.
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
Fixed an error where if there were no MPI exceptions, a
JNI error could still exist and not get handled.
Signed-off-by: Nathaniel Graham <nrgraham23@gmail.com>
It is valid for any rank to deviate on the split_type argument if they
specify MPI_UNDEFINED. The code was incorrectly not allowing this
condition. Changed the split_type uniformity check and allow
local_size to be 0 if the local split_type is MPI_UNDEFINED.
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
Newer versions of gcc have "poisoned" the __malloc_initialize_hook
name and it can no longer be used. Added a configure check and
protection around its usage.
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
According to MPI-3.1 P.122, `ni` for `MPI_COMBINER_DARRAY`
should be `4*ndims+4`, not `4*size+4`.
This bug may cause SEGV if `size` is smaller than `ndims`
when the darray is used for one-sided communication (pt2pt OSC).
This bug was introduced in open-mpi/ompi@79b13f36 (when darray
became a first class citizen and the `a_i` index of darray was
shifted by 2). The corresponding `MPI_Type_create_darray()`
function sets a right value so we don't need to update the function.
Add PMIx 2.0
Remove PMIx 1.1.4
Cleanup copying of component
Add missing file
Touchup a typo in the Makefile.am
Update the pmix ext114 component
Minor cleanups and resync to master
Update to latest PMIx 2.x
Update to the PMIx event notification branch latest changes
Per discussion on https://github.com/open-mpi/ompi/pull/1767 (and some
subsequent phone calls and off-issue email discussions), the PSM
library is hijacking signal handlers by default. Specifically: unless
the environment variables `IPATH_NO_BACKTRACE=1` (for PSM / Intel
TrueScale) is set, the library constructor for this library will
hijack various signal handlers for the purpose of invoking its own
error reporting mechanisms.
This may be a bit *surprising*, but is not a *problem*, per se. The
real problem is that older versions of at least the PSM library do not
unregister these signal handlers upon being unloaded from memory.
Hence, a segv can actually result in a double segv (i.e., the original
segv and then another segv when the now-non-existent signal handler is
invoked).
This PSM signal hijacking subverts Open MPI's own signal reporting
mechanism, which may be a bit surprising for some users (particularly
those who do not have Intel TrueScale). As such, we disable it by
default so that Open MPI's own error-reporting mechanisms are used.
Additionally, there is a typo in the library destructor for the PSM2
library that may cause problems in the unloading of its signal
handlers. This problem can be avoided by setting `HFI_NO_BACKTRACE=1`
(for PSM2 / Intel OmniPath).
This is further compounded by the fact that the PSM / PSM2 libraries
can be loaded by the OFI MTL and the usNIC BTL (because they are
loaded by libfabric), even when there is no Intel networking hardware
present. Having the PSM/PSM2 libraries behave this way when no Intel
hardware is present is clearly undesirable (and is likely to be fixed
in future releases of the PSM/PSM2 libraries).
This commit sets the following two environment variables to disable
this behavior from the PSM/PSM2 libraries (if they are not already
set):
* IPATH_NO_BACKTRACE=1
* HFI_NO_BACKTRACE=1
If the user has set these variables before invoking Open MPI, we will
not override their values (i.e., their preferences will be honored).
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
According to MPI-3.1 P.121, `ni` for `MPI_COMBINER_HINDEXED_BLOCK`
should be `2`, not `2 + count`.
This bug was introduced in 113b45b4 (when `MPI_Type_create_hindexed_block`
support is added in Open MPI) and fixed partially in 7f5314ee and 8de93982.
This commit fixes the remaining part.
Probably this bug has no user impact. It only consumes a bit more memory.
This commit fixes a bug in waitany that causes the code to go past the
beginning of the request array. The loop conditional i >= 0 is invalid
since i is unsigned. Changed to loop to check (i+1) > 0.
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
This commit fixes two bugs in pml/ob1:
- Do not called MCA_PML_OB1_PROGRESS_PENDING from
mca_pml_ob1_send_request_start_copy as this may lead to a recursive
call to mca_pml_ob1_send_request_process_pending.
- In mca_pml_ob1_send_request_start_rdma return the rdma frag object
if a btl fragment can not be allocated. This fixes a leak
identified by @abouteiller and @bosilca.
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
NAG compiler use gcc (and not ld) as a linker, so in order to pass an option to the linker,
the flag is -Wl,-Wl,,<option> and not -Wl,<option>
Thanks Paul Hargrove for the report
* mpi/start: fix bugs in cm and ob1 start functions
There were several problems with the implementation of start in Open
MPI:
- There are no checks whatsoever on the state of the request(s)
provided to MPI_Start/MPI_Start_all. It is erroneous to provide an
active request to either of these calls. Since we are already
looping over the provided requests there is little overhead in
verifying that the request can be started.
- Both ob1 and cm were always throwing away the request on the
initial call to start and start_all with a particular
request. Subsequent calls would see that the request was
pml_complete and reuse it. This introduced a leak as the initial
request was never freed. Since the only pml request that can
be mpi complete but not pml complete is a buffered send the
code to reallocate the request has been moved. To detect that
a request is indeed mpi complete but not pml complete isend_init
in both cm and ob1 now marks the new request as pml complete.
- If a new request was needed the callbacks on the original request
were not copied over to the new request. This can cause osc/pt2pt
to hang as the incoming message callback is never called.
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
* osc/pt2pt: add request for gc after starting a new request
Starting a new receive may cause a recursive call into the pt2pt
frag receive function. If this happens and the prior request is
on the garbage collection list it could cause problems. This commit
moves the gc insert until after the new request has been posted.
Signed-off-by: Nathan Hjelm <hjelmn@me.com>
* User defined ops leave the op_type unset which can confuse logic
in a collective component that is trying to convert the op to the
approprate local function.
I am not sure if we should continue to maintain the request support
for FT_CR, but I tried here to simplify the code while maintaining
the same meaning.
Rewrite the ompi_request_complete function to take in account the
with_signal argument. Change the comment to explain the expected
behavior.
Alter all the ompi_request_complete uses to make sure the status of the
request is set before calling ompi_request_complete.
bot🏷️enhancement
Based on current implementation it is faster to use a blocking
send than the non-blocking version. Switch the exchange function
used in the barrier to use the blocking version combined with
the non-blocking version of the receive.
The request code was setting the request as pml_complete before
calling MCA_PML_OB1_SEND_REQUEST_MPI_COMPLETE. This was causing
MCA_PML_OB1_SEND_REQUEST_RETURN to be called twice in some cases. The
code now mirrors the recvreq code and only sets the request as pml
complete if the request has not already been freed.
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
This commit fixes two bugs in MPI_Wait_any:
- If all requests are inactive then the sync wait would hang forever
because no requests are attached to the sync.
- The request pointer was pointing to the request before the completed
request which caused the wrong request to be freed or marked inactive.
MPI_Wait_some had a similar issue if all the requests were pending.
These issues were identified by MTT.
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
Regarding BFO it should be mentionned that this component is currently
unmaintained, and that despite my efforts I could not make it compile
(it would not compile before this patch either).
This fixes a hang caused by the request refactor work. The cm pml was
not updated and was hanging is most cases.
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
The request.h header is unfortunately included files in the C++
bindings. C++ does not allow assigning from void * to another
pointer without a cast. This commit adds the cast. We can clean this
up when the C++ bindings are deleted.
Fixesopen-mpi/ompi#1707
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
* Remodel the request.
Added the wait sync primitive and integrate it into the PML and MTL
infrastructure. The multi-threaded requests are now significantly
less heavy and less noisy (only the threads associated with completed
requests are signaled).
* Fix the condition to release the request.
This commit adds support for the MPI-3.1 accumulate_ordering info
key. The default value is rar,war,raw,waw and is supported using an
MCA variable flag enumerator.
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
Add checks to bail out if our precomputed value is less
than needed (we are already at fault).
bot:milestone:v1.10.3
bot:milestone:v2.0
bot🏷️bug
bot:assign: @ggouaillardet
This commit changes the behavior of bml/r2 from conditionally
registering btl progress functions to always registering progress
functions. Any progress function beloning to a btl that is not yet in
use is registered as low-priority. As soon as a proc is added that
will make use of the btl is is re-registered normally.
This works around an issue with some btls. In order to progress a
first message from an unknown peer both ugni and openib need to have
their progress functions called. If either btl is not in use after the
first call to add_procs the callback was never happening. This commit
ensures the btl progress function is called at some point but the
number of progress callbacks is reduced from normal to ensure lower
overhead when a btl is not used. The current ratio is 1 low priority
progress callback for every 8 calls to opal_progress().
Fixesopen-mpi/ompi#1676
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
As more providers get added to libfabric, the default exclude list would need
to be updated.
Instead, we choose to include only the providers known to work by default.
New default:
- include: psm,psm2,gni
- exclude: none
lines up to the next ".fi" -- which for functions that do not implement the corresponding interface
as code will have all eliminated.
Change to delete the man page's content up to the next section header ".SH"
Also in case of make V=1, we'd like to see the command line, too.
Amend OMPI_Affinity_str according to the other man-pages definitions.
There were some old/stale function names in some debugging/verbose
opal_output calls. Use __func__ instead, so that they won't become
stale in the future.
Thanks to Durga Choudhury for pointing out the issue.
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
Update external as well
Revise the change: we still need the MPI_Barrier in MPI_Finalize when we use a blocking fence, but do use the "lazy" wait for completion. Replace the direct logic in MPI_Init with a cleaner macro
Intel TrueScale and Intel OmniPath, and detect a link in ACTIVE state.
This fix addresses the scenario reported in the below OMPI users email,
including formerly named Qlogic IB, now Intel True scale. Given the
nature of the PSM/PSM2 mtls this fix applies to OmniPath:
https://www.open-mpi.org/community/lists/users/2016/04/29018.php
MPIR-1.0 specifies that the following symbols are only relevant in the
starter process:
- MPIR_Breakpoint
- MPIR_being_debugged
- MPIR_debug_state
- MPIR_debug_abort_string
I.e., the code filling in values in these various symbols was useless
/ never used.
MPIR-1.1 will define that MPIR_being_debugged *is* relevant in MPI
processes. That symbol is currently defined in libopen-rte (which is
currently causing a duplicate symbol error for static builds -- this
commit fixes that error), and is therefore still available for MPI
processes.
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
MPI-3.1 says that even if no info keys are set on the file, we need to
return a new, empty info.
Thanks to Lisandro Dalcin for identifying the issue.
Fixesopen-mpi/ompi#1630
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
