ports/openmpi
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Автор SHA1 Сообщение Дата
Nathaniel Graham
59c43f4669 Additional java bindings for the Comm class 
Added bindings for MPI_COMM_CREATE_GROUP and MPI_COMM_DUP_WITH_INFO.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-24 16:14:35 -06:00
Nathaniel Graham
f87c41e926 Fix a compile issue in MPI.java 
A conflict was not fully resolved in the previous merge.  This
fixes the issue that was created.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-24 11:54:52 -06:00
Nathaniel Graham
0d7a38552e Formatting fixes for Java files. 
Fixed tab indenting as well as some of the block comments
at the top of a few of the files.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-24 11:02:13 -06:00
Howard Pritchard
5f14273e32 Merge pull request #743 from nrgraham23/java_win_name_bindings 
Java bindings for window name get and set
 2015-07-24 10:53:14 -06:00
Edgar Gabriel
4f85e0d833 add the configure logic to check for sem_open and sem_init. 
Change the code to rely on HAVE_SEM_OPEN etc. instead of my internal macro.
 2015-07-24 10:23:43 -05:00
Edgar Gabriel
d1d23054c6 rename the sm_offset structure to mca_sharedfp_sm_offset to obey to the Open MPI naming convention 2015-07-24 10:10:41 -05:00
Edgar Gabriel
c91cb67787 fix a bug in the unnamed semaphore section that was introduced when I tried to unify the named and unnamed semaphore logic. 2015-07-24 10:05:07 -05:00
Edgar Gabriel
57c301f25a remove an erroneous free statement. 2015-07-24 09:44:27 -05:00
Nathaniel Graham
2a156a1c2e Java bindings for window name get and set 
Includes bindings for MPI_WIN_GET_NAME and MPI_WIN_SET_NAME.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-23 18:01:19 -06:00
Nathaniel Graham
a1b47a333a Java Environment Variable Bindings 
Added the bindings for MPI_GET_VERSION and MPI_GET_LIBRARY_VERSION.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-23 14:52:01 -06:00
Howard Pritchard
967907fea4 Merge pull request #731 from nrgraham23/alltoallw_functions 
Alltoallw functions
 2015-07-22 12:21:01 -06:00
Nathaniel Graham
1197d2a893 Adding missed copyrights. 
I did not add the LANL copyrights to the files I touched
while fixing the javadoc errors.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-22 11:04:41 -06:00
Jeff Squyres
6929aca1b7 topo/basic: also remove .windows from Makefile.am 2015-07-22 09:20:43 -04:00
Jeff Squyres
24ca887bd8 topo/basic: remove stale (empty) .windows file 2015-07-22 09:10:50 -04:00
Nathaniel Graham
11e1f09c25 White space fixes 
Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-21 16:39:59 -06:00
Nathaniel Graham
7548e342dd Java bindings for alltoallw functions. 
Includes bindings for MPI_ALLTOALLW and MPI_IALLTOALLW.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-21 16:29:22 -06:00
Gilles Gouaillardet
46a87cabf0 fix comment in ompi/mpi/c/group_{excl,incl}.c 
no code change
 2015-07-21 10:29:55 +09:00
Edgar Gabriel
b484784dca make ompio return gracefully in case something goes wrong early in file_open. 2015-07-20 10:03:16 -05:00
Edgar Gabriel
86c3000e18 fix the delete selection logic in io/base. With the previous version, there was a mismatch 
in the version number and no component was selected for file_delete.
 2015-07-20 10:01:30 -05:00
Gilles Gouaillardet
bd60ce1655 fortran: add missing non blocking i/o files to Makefile 
fixes open-mpi/ompi@01f752a504
 2015-07-16 11:27:14 +09:00
Howard Pritchard
466c8b0159 Merge pull request #697 from edgargabriel/pr/nb-coll-part2 
pr/nb collective I/O part2
 2015-07-14 14:00:39 -06:00
Edgar Gabriel
e355db005e fix the logic for setting stripe size and stripe count in the lustre fs module. Takes now also the MPI_Info object into consideration. 2015-07-14 10:53:19 -05:00
Ralph Castain
683efcb850 Rename the current opal_event_base to opal_sync_event_base in preparation for adding an async progress thread to opal. No functional changes made here - just a simple rename. 2015-07-11 10:08:19 -07:00
Jeff Squyres
efc4c93d7a MPI_Scatter.3in: fix typo 
Thanks to Akshay Venkatesh for noticing the mistake.
 2015-07-10 20:11:39 -07:00
Howard Pritchard
4a3ca9d9b8 Merge pull request #710 from nrgraham23/javadoc_warnings_fix 
Javadoc warnings fix
 2015-07-10 19:08:38 -06:00
Nathaniel Graham
6bca7486c5 Added suppression statements. 
There are a few places where adding the @param for the variable
javadoc wants does not make sense, so I added suppression statements
in those areas.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-10 16:04:22 -06:00
Rolf vandeVaart
06dbcc1b25 Merge pull request #708 from rolfv/pr/cuda-macro-fix-minor 
Minor rewrite of text and comments
 2015-07-10 15:32:03 -04:00
Nathaniel Graham
580251e96a Fixes for javadoc warnings. 
Added missings @params and @throws as well as adding definitions for the @throws tags.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-10 12:59:45 -06:00
Rolf vandeVaart
5ee2505174 Minor rewrite of text and comments 2015-07-10 13:50:06 -04:00
Nathaniel Graham
7f6d141bd6 More one sided java bindings. 
Bindings for the MPI_WIN_FLUSH_LOCAL, MPI_WIN_FLUSH_LOCAL_ALL, MPI_WIN_ALLOCATE, MPI_WIN_ALLOCATE_SHARED, and MPI_COMM_SPLIT_TYPE.  Also added several necessary constants.

Signed-off-by: Nathaniel Graham ngraham@lanl.gov
 2015-07-10 11:40:18 -06:00
Howard Pritchard
e9d6c7a910 Merge pull request #693 from nrgraham23/additional_java_bindings 
Additional java bindings
 2015-07-10 11:10:29 -06:00
Edgar Gabriel
95c144c4b6 make the f08 interface actually compile. 2015-07-09 10:58:14 -05:00
Edgar Gabriel
601e5efca8 add the manpages for the new MPI-3.1 non-blocking collective I/O operations. 2015-07-09 10:58:14 -05:00
Edgar Gabriel
19994ff60d add fortran interfaces to the new nb collective I/O functions 2015-07-09 10:58:14 -05:00
Edgar Gabriel
01f752a504 make the c interface functions compile and work and start with the fortran interface functions. 2015-07-09 10:58:13 -05:00
Edgar Gabriel
f2af8e94ff - first cut on the io interface changes 
- add the C interfaces for the new non-blocking collective I/O functions of MPI 3.1
 2015-07-09 10:58:13 -05:00
Rolf vandeVaart
77950374a5 Merge pull request #695 from rolfv/pr/fix-previous-cuda-macro-change 
Fix errors from previous commit
 2015-07-08 12:59:10 -04:00
yosefe
103cac5bd9 yalla: fix mxm configuration parsing. 
Take configuration from MXM_MPI_xx instead of MXM_PML_xx, same as mtl
mxm.
 2015-07-08 19:18:23 +03:00
Rolf vandeVaart
1229dd3ed6 Fix errors from previous commit 2015-07-08 11:46:52 -04:00
Rolf vandeVaart
2797f5b8fc Merge pull request #694 from rolfv/pr/update-cuda-macro 
Some minor cleanup and renaming of query function.
 2015-07-08 11:09:17 -04:00
Rolf vandeVaart
6372baa7b9 Some minor cleanup and renaming of query function. 2015-07-08 10:17:35 -04:00
Jeff Squyres
d5e16839e9 mpi_f08: restore C/Fortran compatibility with F08 BUFFER_DETACH 
The C int/Fint interoperability code was erroneously removed when this
function was moved to the use-mpi-f08 directory.
 2015-07-08 03:55:50 -07:00
Nathaniel Graham
26c528a627 Copyright additions 
Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-07 16:14:21 -06:00
Howard Pritchard
68c69d07ff add copyrights to changed java related files 
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
 2015-07-07 16:10:58 -06:00
Nathaniel Graham
982a232955 Additional Java Bindings 
Java bindings for the following functions: MPI_RACCUMULATE, MPI_GET_ACCUMULATE, MPI_RGET_ACCUMULATE, MPI_WIN_LOCK_ALL, MPI_WIN_UNLOCK_ALL, MPI_WIN_SYNC, MPI_WIN_FLUSH, MPI_WIN_FLUSH_ALL, MPI_COMPARE_AND_SWAP, and MPI_FETCH_AND_OP.  Also includes Java bindings for the Operations MPI_REPLACE and MPI_NO_OP.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-07-07 16:04:17 -06:00
Jeff Squyres
8ff60c47cc mpi_f08: move the f08 version of buffer_detach to use-mpi-f08 
@ggouaillardet was right -- we should have put the
ompi_buffer_detach_f08() function in the use-mpi-f08 directory to
begin with.  Putting it in the mpif-h directory made it complicated as
to whether the function would be built or not (e.g., whether weak
symbols were supported or not, whether the profiling layer was
disabled or not, ...etc.).

Just put it in the use-mpi-f08 directory and always build it (when the
mpi_f08 module is built, of course), and keep it simple.
 2015-07-07 07:38:09 -07:00
Gilles Gouaillardet
9e89985f3d restore whitespaces into the pdf files 2015-07-07 09:17:00 +09:00
Howard Pritchard
fb9c218e5d Merge pull request #684 from nrgraham23/java_bindings 
ompi/java: add MPI_Rget and MPI_Rput java bindings
 2015-07-06 15:25:06 -06:00
Jeff Squyres
e28f016793 fortran only compile f08 buffer_detach once 
Since there is no profiling version of the f08 buffer_detach function
(or, more specifically, the Fortran compile does the name mangling of
MPI and PMPI to the back-end C function for us), ensure that it is
only compiled once.

Also, per Gilles' observation, the f08-related #pragmas are no longer
relevant.
 2015-07-06 09:52:27 -07:00
Jeff Squyres
4694b16256 mpi_f08: further fixes for MPI_BUFFER_DETACH 
A few minor fixes in addition to
open-mpi/ompi@bd94da7de4 and
open-mpi/ompi@fc69c0be24.
 2015-07-04 05:27:22 -07:00