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Граф коммитов

10324 Коммитов

Автор SHA1 Сообщение Дата
Sergey Oblomov
0759bb8561 COLL: removed FCA component
- removed FCA collectives from coll/scoll

Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
2019-01-09 16:51:40 +02:00
Aurelien Bouteiller
e54496bf2a
Merge pull request #6087 from ICLDisco/export/errors_cid
Manage errors in communicator creations (cid)
2018-12-31 15:01:55 -05:00
Jeff Squyres
17be4c6d1f
Merge pull request #6229 from jsquyres/pr/fix-enable-grequest-extension-in-a-tarball
romio321: ensure to distribute ompi_grequestx.h
2018-12-28 16:15:23 -05:00
Jeff Squyres
62321be186 romio321: ensure to distribute ompi_grequestx.h
Refs https://github.com/open-mpi/ompi/issues/6227.  Thanks to
@georgemarselis for reporting.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2018-12-27 15:39:47 -08:00
bosilca
96f88052e9
Merge pull request #5948 from mkurnosov/coll-ireduce-silence-coverity
coll/libnbc/ireduce: silence Coverity warning CID 1440360
2018-12-24 12:59:16 -05:00
bosilca
593db292da
Merge pull request #5644 from mkurnosov/coll-iallreduce-rabenseifner
coll/libnbc: add Rabenseifner's algorithm for MPI_Iallreduce
2018-12-24 12:58:21 -05:00
Jeff Squyres
efcaef74d8 MPI_Type_set_name: fix string length at target
opal_string_copy() takes care of all the string computations.
Specifically: when we converted to opal_string_copy(), we accidentally
left the *source* length as the argument, not the *target* length,
which resulted in one less character being copied than intended (as
was showing up in MTT C++ testing results).

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2018-12-23 13:00:01 -08:00
Aurelien Bouteiller
bd0d2b832e
Merge pull request #6086 from ICLDisco/export/errors_nbc
Manage errors in NBC collective ops
2018-12-21 02:34:00 -05:00
Jeff Squyres
1be5358834
Merge pull request #6212 from jsquyres/pr/fix-treematch-common-symbol
treematch: fix global common symbol
2018-12-20 15:20:41 -05:00
Jeff Squyres
e9a6246b90 treematch: fix global common symbol
Despite its name, this symbol doesn't need to be global.  So just make
it static.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2018-12-20 11:06:14 -08:00
Jeff Squyres
81bfb5f5e5 Remove some IMPI attributes that were never implemented.
This is a holdover from LAM/MPI that was never implemented here in
Open MPI (and never will be).  Might as well remove this dead code.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2018-12-20 10:12:32 -08:00
Nathan Hjelm
4944508603
Merge pull request #6136 from hjelmn/opal_cleanup
opal: clean up init/finalize
2018-12-18 15:23:32 -07:00
Nathan Hjelm
a39cb747dd ompi/datatype: don't call opal_datatype_finalize directly
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2018-12-18 14:37:04 -07:00
Nathan Hjelm
06baa518f7 rte/pmix: fill in opal_process_info when using prrte/pmix
This commit fixes a bug when launching with prun where the process
info structures used by the btls are not populated.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2018-12-13 16:04:31 -07:00
bosilca
804a517929
Merge pull request #6146 from bosilca/topic/treematch_update
Update to the latest TreeMatch (v1.3).
2018-12-13 13:26:40 -05:00
Aravind Gopalakrishnan
e5e19dfcf7 Fix for SEP when num local procs is greater than available contexts
For cases when the number of local processes is greater than the number of
available contexts, the SEP initialization phase would calculate the number of
contexts to provision for each rank to be 0 and would eventually crash.

Fix the issue here by using regular endpoints in the event the number of local
processes is more than available contexts. This fixes issue #6182.

Signed-off-by: Aravind Gopalakrishnan <Aravind.Gopalakrishnan@intel.com>
2018-12-12 16:49:04 -08:00
KAWASHIMA Takahiro
adc05f705e
Merge pull request #6174 from kawashima-fj/pr/f08-missing-handles
fortran/use-mpi-f08: Add C++ datatypes and MPI_NO_OP
2018-12-12 14:13:36 +09:00
Brian Barrett
6e15128d96 mtl/ofi: Fix crash if no providers found
Commit 109d0569ff introduced a crash when an error occurred
before ofi_ctxt was allocated, including when no providers
passed the selection logic.  Properly check that the pointer
is not NULL in the error cleanup code before dereferencing
the pointer.

Signed-off-by: Brian Barrett <bbarrett@amazon.com>
2018-12-11 15:46:18 -08:00
Jeff Squyres
6f7fbd1676
Merge pull request #6158 from ggouaillardet/topic/mpiext-path-updates
mpiext: updates for header file locations
2018-12-11 13:01:46 -05:00
KAWASHIMA Takahiro
63ecf01610 fortran/use-mpi-f08: Add C++ datatypes and MPI_NO_OP
Though the MPI standard does not have `MPI_CXX_COMPLEX`, `mpi.h`,
`mpif.h`, and `mpi.mod` have it. So I added it for consistency.

Signed-off-by: KAWASHIMA Takahiro <t-kawashima@jp.fujitsu.com>
2018-12-11 13:08:29 +09:00
KAWASHIMA Takahiro
e0c5bad195 fortran/use-mpi-f08: Remove unnecessary ;
Signed-off-by: KAWASHIMA Takahiro <t-kawashima@jp.fujitsu.com>
2018-12-11 09:06:21 +09:00
Matias Cabral
cdb952f66d
Merge pull request #6170 from matcabral/remove_psm2_lower_p
MTL/PSM2: add missing default priority
2018-12-07 16:11:45 -08:00
Matias A Cabral
c76c6d8b28 MTL/PSM2: add missing default priority
Missing default priority after PR #6153

Signed-off-by: Matias Cabral <matias.a.cabral@intel.com>
2018-12-07 14:46:34 -08:00
Matias Cabral
0b821f2184
Merge pull request #6153 from matcabral/remove_psm2_lower_p
MTL/PSM2: Do not lower the priority when all processes are local.
2018-12-07 10:19:53 -08:00
KAWASHIMA Takahiro
4be5a6cdc8
Merge pull request #6159 from kawashima-fj/pr/fix-type-create-f90
mpi/c: Fix MPI_TYPE_CREATE_F90_{REAL,COMPLEX}
2018-12-08 01:41:20 +09:00
KAWASHIMA Takahiro
6fb01f64fe mpi/c: Fix MPI_TYPE_CREATE_F90_{REAL,COMPLEX}
This commit fixes edge cases of `r = 38` and `r = 308`.

As defined in the MPI standard, `TYPE_CREATE_F90_REAL` and
`TYPE_CREATE_F90_COMPLEX` must be consistent with the Fortran
`SELECTED_REAL_KIND` function. The `SELECTED_REAL_KIND` function is
defined based on the `RANGE` function. The `RANGE` function returns
`INT(MIN(LOG10(HUGE(X)), -LOG10(TINY(X))))` for a real value `X`.

The old code considers only `INT(LOG10(HUGE(X)))` using `*_MAX_10_EXP`.
This commit adds `INT(-LOG10(TINY(X)))` part using `*_MIN_10_EXP`.

This bug affected the following `p`-`r` combinations.

| p             | r   | expected  | returned  | expected  | returned  |
| :------------ | --: | :-------- | :-------- | :-------  | :-------- |
| MPI_UNDEFINED |  38 | REAL8     | REAL4     | COMPLEX16 | COMPLEX8  |
| 0 <= p <= 6   |  38 | REAL8     | REAL4     | COMPLEX16 | COMPLEX8  |
| MPI_UNDEFINED | 308 | REAL16    | REAL8     | COMPLEX32 | COMPLEX16 |
| 0 <= p <= 15  | 308 | REAL16    | REAL8     | COMPLEX32 | COMPLEX16 |

MPICH returns the same result as Open MPI with this fix.

Signed-off-by: KAWASHIMA Takahiro <t-kawashima@jp.fujitsu.com>
2018-12-06 16:48:23 +09:00
Gilles Gouaillardet
975e3cd0c9 mpiext: updates for header file locations
Per discussion on https://github.com/open-mpi/ompi/pull/6030
and https://github.com/open-mpi/ompi/pull/6145, move
around where MPI extension header files are installed (specifically:
the installation tree path does not need to match the source tree
path).

For reference, header files were installed like this :

 - <prefix>/include/openmpi/ompi/mpiext/pcollreq/mpif-h/mpiext_pcollreq_mpifh.h
 - <prefix>/include/openmpi/ompi/mpiext/pcollreq/c/mpiext_pcollreq_c.h

and they are now installed like this :

 - <prefix>/include/openmpi/mpiext/mpiext_pcollreq_mpifh.h
 - <prefix>/include/openmpi/mpiext/mpiext_pcollreq_c.h

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-12-06 15:40:02 +09:00
Gilles Gouaillardet
4918fc4455 Revert "fortran/mpif-h: keep include path for extension short"
This reverts commit open-mpi/ompi@848a868f7b.

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-12-06 15:39:59 +09:00
Gilles Gouaillardet
ccbdc8fd58 Revert "c: keep include path for extension short"
This reverts commit open-mpi/ompi@27c25fa721.

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-12-06 15:39:54 +09:00
Gilles Gouaillardet
a152aa215e cleanup: remove the unused (and unexpanded) {ORTE,OMPI}_WANT_REPO_REV macro
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-12-06 13:13:13 +09:00
George Bosilca
74f2365d6e
Remove most (all) warnings from the new TreeMatch.
Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
2018-12-05 15:38:39 -05:00
Guillaume Mercier
27aa34e53f
New version based on TM 1.3
Optimize_topology is commented for now until bug resolved in TM

Signed-off-by: Guillaume Mercier <guillaume.mercier@bordeaux-inp.fr>
2018-12-05 15:38:39 -05:00
Matias A Cabral
fc8582c560 MTL/PSM2: Do not lower the priority when all processes are local.
The intention of lowering the priority when all processes are local
was to favor Vader BTL. However, in builds including the OFI MTL it
gets selected instead.

Reviewed-by: Spruit, Neil R <neil.r.spruit@intel.com>
Reviewed-by: Gopalakrishnan, Aravind <aravind.gopalakrishnan@intel.com>
Signed-off-by: Matias Cabral <matias.a.cabral@intel.com>
2018-12-04 15:31:09 -08:00
Matias Cabral
abd34620f4
Merge pull request #5972 from aravindksg/ofi_sep_master
MTL/OFI: Add OFI Scalable Endpoint support
2018-12-04 13:07:44 -08:00
Aravind Gopalakrishnan
109d0569ff MTL/OFI: Add OFI Scalable Endpoint support
OFI MTL supports OFI Scalable Endpoints feature as means to improve
multi-threaded application throughput and message rate. Currently the feature
is designed to utilize multiple TX/RX contexts exposed by the OFI provider in
conjunction with a multi-communicator MPI application model. For more
information, refer to README under mtl/ofi.

Reviewed-by: Matias Cabral <matias.a.cabral@intel.com>
Reviewed-by: Neil Spruit <neil.r.spruit@intel.com>
Signed-off-by: Aravind Gopalakrishnan <Aravind.Gopalakrishnan@intel.com>
2018-12-03 09:56:52 -08:00
George Bosilca
c6f73e8883
First step of the integration with the new TreeMatch.
Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
2018-12-02 20:05:03 -05:00
Yossi Itigin
83cca9d52a ucx: add owner.txt for components
Signed-off-by: Yossi Itigin <yosefe@mellanox.com>
2018-12-01 17:14:03 +02:00
matcabral
6a15712df5 MTL/OFI: revert PR 6082
Revert to avoid issues with dynamic processes.

Signed-off-by: matcabral <matias.a.cabral@intel.com>
2018-11-30 13:44:39 -08:00
Matias Cabral
ef5db1b752
Merge pull request #6082 from matcabral/lower_mtl_ofi_p
MTL/OFI: Lower priority when all procs are local
2018-11-30 12:05:40 -08:00
Nathan Hjelm
5ebcbe444e
Merge pull request #6083 from devreal/rdma-plug-memleak
Plug two memory leaks in rdma osc
2018-11-27 09:56:19 -07:00
Nathan Hjelm
27084c60c9
Merge pull request #6123 from hoopoepg/topic/osc-ucx-max-level-60
OSC/UCX: set max level value to 60
2018-11-27 09:51:09 -07:00
Sergey Oblomov
2d230b3aac OSC/UCX: set max level value to 60
Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
2018-11-27 14:20:28 +02:00
KAWASHIMA Takahiro
291d7654c5
Merge pull request #6030 from ggouaillardet/topic/mpiext_short_path
mpiext: keep include path for extension short
2018-11-27 20:59:01 +09:00
Gilles Gouaillardet
5a968306d6 mpi/c: add back (some more) deprecated subroutines
- MPI_NULL_DELETE_FN
 - MPI_NULL_COPY_FN
 - MPI_DUP_FN

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-11-27 13:56:03 +09:00
Gilles Gouaillardet
27c25fa721 c: keep include path for extension short
move openmpi/ompi/mpiext/FOO/c/mpiext_FOO_c.h to
openmpi/ompi/mpiext/FOO_c.h in order to use consistent
paths with mpif.h extensions

Refs. open-mpi/ompi#6019

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-11-27 11:21:05 +09:00
Gilles Gouaillardet
848a868f7b fortran/mpif-h: keep include path for extension short
in order to cope with the 72 characters per line limit, move
openmpi/ompi/mpiext/FOO/mpif-h/mpiext_FOO_mpifh.h to
openmpi/ompi/mpiext/FOO_mpifh.h

Refs. open-mpi/ompi#6019

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-11-27 09:39:09 +09:00
Jeff Squyres
8459d29738
Merge pull request #5979 from mkurnosov/coll-libnbc-cleanup
coll/libnbc: remove debug output
2018-11-26 18:10:10 -05:00
Jeff Squyres
dbe064af97
Merge pull request #5653 from bmwiedemann/userhost
Allow to override build user and host
2018-11-26 17:48:37 -05:00
Bert Wesarg
b3f3281290 Re-add removed deprecate-only MPI-2.0 symbols
See #6114

Signed-off-by: Bert Wesarg <bert.wesarg@tu-dresden.de>
2018-11-26 14:00:05 +01:00
Yossi Itigin
e98ce2b36b
Merge pull request #6108 from yosefe/topic/pml-ucx-init-req_mpi_object
pml_ucx: initialize req_mpi_object.comm for error handler
2018-11-26 11:54:10 +02:00