Ralph Castain
0630680f36
Two cleanups required for transfer to 1.8.4:
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* Use %d format for the topo signature as some systems apparently have problems with %u
* Use correct variable in show_help message
2014-12-12 17:23:32 -08:00
Rolf vandeVaart
f4aecdbfd2
Change logging function name from log to logfn. Fixes issue with PGI compile
2014-12-12 09:46:44 -05:00
Ralph Castain
bb529ebd8e
Revise the way we handle hetero nodes as users are finding this (a) a significant surprise, and (b) confusing as to when it is required. So try to automate it a bit by creating a topology "signature" that mpirun can share on the cmd line with the remote daemons, thus allowing them to check to see if they match. This isn't comprehensive of course - for now, it only checks the number of each type of hwloc object on the node. This is good enough to pickup major differences (e.g., where we have different numbers of sockets or assigned core bindings).
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Retain the hetero-nodes flag for those cases where the user *knows* that there are differences and our automated system isn't good enough to see it.
Will obviously require further refinement as we find out which variances it can detect, and which it cannot.
2014-12-08 15:38:14 -08:00
Ralph Castain
b757b3f452
Ensure that the #nodes in the job map gets properly updated when using the sequential mapper. Provide some further diagnostic info to help understand the problem when encountered.
2014-12-08 08:03:53 -08:00
Ralph Castain
d6d69e2b13
Get the direct routed component to work with both TCP and USOCK OOB components. We previously had setup the direct component so it would only support direct-launched applications. Thus, all routes went direct between processes. However, if the job had been launched by mpirun, this made no sense - what you wanted instead was to have each app proc talk directly to its daemon, but have the daemons all directly connect to each other.
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So we need all the routing code for dealing with cross-job communications, lifelines, etc. The HNP will be directly connected to all daemons as they must callback at startup, and so we need to track those children correctly so we know when it is okay to terminate.
We still have to support direct launch, though, as this is the only component we can use in that scenario. So if the app doesn't have daemon URI info, then it must fall back to directly connecting to everything.
2014-12-07 09:11:48 -08:00
Ralph Castain
b1bf557024
Fix the hostfile parser so it correctly ignores binding directives that are just integers. Fix the create_dmns function so we don't hang if we can't get an error before creating the job map for an application.
2014-12-05 15:47:09 -08:00
Elena
af38a762a2
these changes fix direct routed component under mpirun; oob tcp and oob ud are working with direct routed component, but usock doesn't work with direct routed component yet.
2014-12-05 12:38:59 +02:00
Ralph Castain
c4fd6d1cde
Fix typo
2014-12-04 12:24:35 -08:00
Ralph Castain
c4002a8485
Further cleanups on the LSF integration - the affinity file is apparently always present, but simply empty if affinity wasn't set.
2014-12-04 12:24:35 -08:00
Ralph Castain
c88f181efe
Fix singleton comm-spawn, yet again. The new grpcomm collectives require a complete knowledge of every active proc in the system in case they participate in a collective. So ensure we pass the required job info when we spawn new daemons, and construct the necessary connections to allow grpcomm to operate.
2014-12-03 18:11:17 -08:00
Howard Pritchard
c67afadcfc
Merge pull request #289 from hppritcha/topic/remove_pmi
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Topic/remove pmi
2014-12-03 16:58:35 -07:00
Jeff Squyres
a3af7d6dbb
Revert "lsf configury: add dependent libraries for static linking"
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This reverts commit 56cfa90ddaaf9939926ff54b5f2f34e32254681e.
2014-12-03 13:32:56 -08:00
Jeff Squyres
92c2ff91ec
Revert "Cleanup static build requirements by adding the wrapper flags back to the component configure.m4's. Minor cleanup of the lsf configure logic."
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This reverts commit open-mpi/ompi@32bf0e7b7e .
2014-12-03 13:15:20 -08:00
Ralph Castain
54c955c92d
Fix a race condition that only appears to be affecting certain setups. The pmix.finalize function closes the file descriptor to the server, which then triggers the errhandler callback. Since the errmgr is about to be unloaded, it might be getting hit.
2014-12-03 12:19:00 -08:00
Howard Pritchard
666344a081
orte/mca/common/alps: fix configure file
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Fix configure file for alps to actually check for
alps being available.
Also include stdio.h explicitly in common_alps.c
2014-12-03 09:44:18 -07:00
Howard Pritchard
ec38aa3732
orte/mca/common: add missing Makefile.am
2014-12-03 09:44:18 -07:00
Howard Pritchard
191fe0f949
alps configury changes
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Clean up the orte_check_alps.m4. There was a little of
unnecesary stuff for handling cle 5, since it wasn't actually
doing the right thing, which would be to use pkg-config to
find dependencies both for dynamic and static linking.
Decouple the searching for alps libs, etc. from cray pmi.
Switch the alps ess and alps odls components' config files
to use the ALPS m4 macro.
alps configury fixes
Improve a check for detecting CLE release.
Improve an error message.
2014-12-03 09:44:17 -07:00
Howard Pritchard
d749077e1e
odls/alps: make sure PMI env. variables set up
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Add call to orte_odls_alps_get_rdma_creds in the
local proc launch step to obtain the Cray Rdma
credentials from the apshepherd, and to set
the PMI env. variables expected by uGNI BTL, etc.
2014-12-03 09:44:17 -07:00
Howard Pritchard
e0487e7702
orte/common/alps: add an alps common lib to orte
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Add an alps common lib to orte. Add a function
to determine whether or not a process is in a
PAGG container.
Note: we need a better naming convention for
common libs, since right now they use a "flat"
naming convention.
2014-12-03 09:44:17 -07:00
Howard Pritchard
a753c3ece0
ess/alps: add initial alps ess component
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Note this alps ess component has nothing to do
with the old CNOS alps component used on
Cray Seastar/Portals3 (Cray XT) systems.
To work properly, changes need to be made to the
open method of the ess/pmi component to keep it
from selecting, and thus initializing, the opal/pmix/cray
component.
2014-12-03 09:44:17 -07:00
Ralph Castain
32bf0e7b7e
Cleanup static build requirements by adding the wrapper flags back to the component configure.m4's. Minor cleanup of the lsf configure logic.
2014-12-03 07:14:06 -08:00
Ralph Castain
cb15cc06e1
Minor changes per Jeff's request on PR for 1.8.4
2014-12-02 19:54:10 -08:00
Ralph Castain
6294ed991b
Fix singletons - still working on singleton comm_spawn
2014-12-02 14:12:24 -08:00
Ralph Castain
14cdb04327
Revise the ess/pmi selection logic as all APPs must select it, and no daemons. Cleanup some of the mca param levels in ess so we don't printout the topology quite as easily.
2014-12-01 21:19:11 -08:00
Jeff Squyres
56cfa90dda
lsf configury: add dependent libraries for static linking
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Ensure to add the LSF dependent libraries and LD flags for the wrapper
compiler static linking case.
2014-12-01 14:59:10 -08:00
Ralph Castain
f92ccaf0f9
Add missing var declarations
2014-12-01 09:36:28 -08:00
Ralph Castain
960ef34988
Ensure the LSF ras adds the hosts to the allocation. Correctly handle the semi-colon vs comma situation in hwloc slot_lists
2014-11-30 14:37:37 -08:00
Ralph Castain
3f9d9ae8b6
Provide tighter LSF integration by correctly handling scenarios where the user has asked LSF to assign bindings. Fix a couple of typos in lex parser definitions. Tell hostfile parser to ignore binding designations in hostfiles. Add an attribute to indicate that cpusets were provided as physical cpu ids.
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Once validated, a version of this will be backported to the v1.8.4 release.
2014-11-30 11:50:31 -08:00
Elena
b17ea23ce0
fixes for direct routed component under mpirun
2014-11-26 13:36:49 +02:00
Nadezhda Kogteva
8dd21c7736
OOB UD: fix case when multiple oob components were specified in command line (checking of uri).
2014-11-25 11:48:11 +02:00
Gilles Gouaillardet
578fe41788
fix hangs introduced by previous commit a6744b81777ab8247908350bd15cca49bedf5208
2014-11-25 17:50:44 +09:00
Gilles Gouaillardet
a6744b8177
fix misc memory leaks specific to the master
2014-11-25 13:52:10 +09:00
Ralph Castain
48f702827e
First part of memory leak cleanups from Gilles
2014-11-24 16:53:33 -08:00
Ralph Castain
2e00e335b9
Add missing header to tarball. Remove stale opal_unignore
2014-11-21 17:35:11 -08:00
Howard Pritchard
6e807c4e8a
odls/alps: minor config cleanup
2014-11-21 11:09:28 -07:00
Nadezhda Kogteva
05b2eb1270
OOB UD: opal_ignore removed from oob ud component: component is compilable. Added support of new RML API, support of opal_buffer as input data. Added usage of routed component.
2014-11-20 10:20:35 +02:00
Howard Pritchard
9425ebefae
Be more selective about closing fd's for alps/odls
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Be more selective about closing fd's for the alps odls
component. Don't close fd's of pipes set up by the
apshepherd for providing RDMA credentials, etc.
Add an entry to the help file in case
alps_app_lli_pipes returns an error.
2014-11-19 11:21:30 -07:00
Howard Pritchard
34c156759e
fix some compiler warnings in ras/alps
2014-11-18 11:32:37 -07:00
Howard Pritchard
4df3447d96
fix compare_nodes bug in alps ras component
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There was an obvious bug in the alps/ras component compare_nodes method
which resulted in the function always evaluating the nodes
as being equivalent.
2014-11-18 11:15:02 -07:00
Howard Pritchard
ff362c16ce
add/update copyrights for alps odls component
2014-11-18 10:16:11 -07:00
Howard Pritchard
dc98b62070
add initial support for an alps odls component
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It turns out that the support for Open MPI apps on
Cray was hanging on a thin thread of support when
using the mpirun job launcher. It just happened that
with a certain set of configuration options things would
work. This is bound to backfire at some point.
To fix this weakness, as well as to allow for mpirun launched
jobs to benefit from many of the advanced placement features
provided by the Cray Linux Environment (as opposed to the hwloc
only default env of orte), a new odls alps component is introduced.
2014-11-17 14:00:09 -07:00
Ralph Castain
d9ceb5aea4
Fix C++ builds by removing no-longer-needed type declaration
2014-11-14 11:44:24 -08:00
Ralph Castain
780c93ee57
Per the PR and discussion on today's telecon, extend the process name definition as a two-field struct of uint32_t's down to the OPAL layer. This resolves issues created by prior commits that impacted both heterogeneous and SPARC support. This also simplifies the OMPI code base by removing the need for frequent memcpy's when transitioning between the OMPI/ORTE layers and OPAL.
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We recognize that this means other users of OPAL will need to "wrap" the opal_process_name_t if they desire to abstract it in some fashion. This is regrettable, and we are looking at possible alternatives that might mitigate that requirement. Meantime, however, we have to put the needs of the OMPI community first, and are taking this step to restore hetero and SPARC support.
2014-11-11 17:00:42 -08:00
Ralph Castain
2a90788724
Support physical processor ids in rankfile
2014-11-10 14:00:40 -08:00
Ralph Castain
8c837d3cb3
Doh - if we can't output an entire block, then we need to adjust the number of bytes remaining to be output or else we will output duplicate bytes when next we are able to write.
2014-11-07 13:13:13 -08:00
Elena
03fc809bc9
This commit contains new dstore component sm which is used for communication between pmix server and clients at the same node via shared memory.
2014-11-06 16:01:19 +02:00
Ralph Castain
738c3e1d72
Ensure that mpirun correctly selects the HNP ess component without attempting to init the PMI subsystem as mpirun won't be supported anyway, so let's avoid the error message. Also, daemons launched by the plm/slurm component must use the ess/slurm module as we cannot trust the Slurm PMI_Init functions to correctly tell us when PMI support is available.
2014-11-03 21:35:42 -08:00
Ralph Castain
6fbc68c830
Update the grpcomm direct component's priority so it sits at the bottom of the list, as it should now that the other components are active. Cleanup up the signature print function a touch to make it more readable. Remove the unneeded xcast functions in brks and rcd components as we will just fall thru to using the "direct" one
2014-11-03 14:43:17 -08:00
Gilles Gouaillardet
652ecdb888
oob/tcp: always include a missing header file
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improve open-mpi/ompi@c9d1e16a9e
2014-10-29 13:39:23 +09:00
Gilles Gouaillardet
c9d1e16a9e
oob/tcp: include a missing header file
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warning can be seen under cygwin without the missing header file
2014-10-28 13:56:25 +09:00
