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47 Коммитов

Автор SHA1 Сообщение Дата
Gilles Gouaillardet
6b57b77ecb configury: add the --disable-io-ompio option
--disable-io-ompio is a shortcut that disable the following
frameworks and components
- fbtl
- fcoll
- sharedfp
- common/ompio
- io/ompio

Fixes open-mpi/ompi#1934
2016-09-23 09:41:09 +09:00
Edgar Gabriel
ccf76b7791 moving the internal read/write functions to common/ompio
and update all fs/fcoll/sharedfp components to use these functions.
2016-07-21 13:08:32 -05:00
Edgar Gabriel
0a1b735eed use the actual preadv and pwritev functions if available. That's what the fbtl interfaces have been designed for. 2016-01-07 08:29:17 -06:00
Edgar Gabriel
7861a8c357 revise the logic in the fbtl plfs avoiding the memcpy operation 2016-01-05 10:04:46 -06:00
Gilles Gouaillardet
ccc96ad204 fbtl/base: add missing #include "opal/util/output.h"
Thanks Marco Atzeri for contributing the original patch
2015-12-24 14:41:26 +09:00
Ralph Castain
869041f770 Purge whitespace from the repo 2015-06-23 20:59:57 -07:00
Gilles Gouaillardet
9d56b85b55 initialize common symbols from ompi 2015-05-08 10:11:58 +09:00
Nathan Hjelm
df75d0382f ompi: use C99 subobject naming for component initialization
This commit helps future-proof ompi components by initializing each
component member by name.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-04-18 10:29:58 -06:00
Nathan Hjelm
b68d66bb9b MCA: Add the project/project version to the MCA base component
This commit adds support for project_framework_component_* parameter
matching. This is the first step in allowing the same framework name
in multiple projects. This change also bumps the MCA component version
to 2.1.0.

All master frameworks have been updated to use the new component
versioning macro. An mca.h has been added to each project to add a
project specific versioning macro of the form
PROJECT_MCA_VERSION_2_1_0.

Signed-off-by: Nathan Hjelm <hjelmn@me.com>
2015-03-27 10:59:04 -06:00
Gilles Gouaillardet
9f13425980 fbtl/posix: fix misc memory leaks
as reported by Coverity with CIDs 72125, 72126, 1269899 and 1269900
2015-03-05 14:20:08 +09:00
Nathan Hjelm
5f1254d710 Update code base to use the new opal_free_list_t
Use of the old ompi_free_list_t and ompi_free_list_item_t is
deprecated. These classes will be removed in a future commit.

This commit updates the entire code base to use opal_free_list_t and
opal_free_list_item_t.

Notes:

OMPI_FREE_LIST_*_MT -> opal_free_list_* (uses opal_using_threads ())

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-02-24 10:05:45 -07:00
Howard Pritchard
bf89131f9e add owner files to opa/ompi/orte mca directories
This commit adds an owner file in each of the component directories
for each framework.  This allows for a simple script to parse
the contents of the files and generate, among other things, tables
to be used on the project's wiki page.  Currently there are two
"fields" in the file, an owner and a status.  A tool to parse
the files and generate tables for the wiki page will be added
in a subsequent commit.
2015-02-22 15:10:23 -07:00
Edgar Gabriel
5d58ce2113 handle the situation where you have an upper liomit on the simultanious number of pending aio operations. 2015-01-29 10:23:36 -06:00
Edgar Gabriel
05c34946f7 implementation of non-blocking read/write operations through aio
functions for the posix module. Som interface changes for the fbtl were
necessary for that.

This commit was SVN r32777.
2014-09-23 21:27:57 +00:00
Edgar Gabriel
4ccc0f5ea2 the length of the iov array should be limited to IOV_MAX, which is defined in limits.h
This commit was SVN r32706.
2014-09-10 21:59:45 +00:00
Edgar Gabriel
cc46b65a5e the fbtl interfaces should really be an ssize_t not a size_t, since the return
value could be negative, which is allowed for ssize_t, but not for size_t.

This commit was SVN r32700.
2014-09-10 15:01:54 +00:00
Edgar Gabriel
599cb7b351 update the pvfs2 fbtl to return the number of bytes generated.
This commit was SVN r32699.
2014-09-10 13:32:06 +00:00
Edgar Gabriel
0d425e2f74 resetting the counter for the iov array has to happen outside of the if statement.
This commit was SVN r32677.
2014-09-07 16:30:56 +00:00
Edgar Gabriel
0f59ce6591 use the fbtl return value as originally intended, namely to retrieve the
number of bytes written and read. Status contains now the actual number of
bytes written for individual operations. For collective operations, this is
unfortunately not possible.

This commit was SVN r32674.
2014-09-07 15:14:57 +00:00
Edgar Gabriel
46de730059 fix a typo
This commit was SVN r32603.
2014-08-25 20:53:19 +00:00
Edgar Gabriel
52eac0146d cleanup of the fbtl interfaces: remove the *sorted optimization flag, since it
was not used anyway in the last two years. Simplifies the code significantly.

This commit was SVN r32602.
2014-08-25 18:04:24 +00:00
Edgar Gabriel
9987135da0 add initial support for non-blocking read and write operations.
This commit was SVN r32571.
2014-08-22 01:34:19 +00:00
Jeff Squyres
c6d9bf906e configury: ensure wrapper static LIBS is filled properly
In core library portions of the configury (e.g., top-level
configure.ac itself), we were calling AC_CHECK_LIB and
OPAL_CHECK_FUNC_LIB to check for various libraries.

'''SIDENOTE:''' It turns out that modern Autoconf has AC_SEARCH_LIBS,
which does just about exactly what OPAL_CHECK_FUNC_LIB does.  So this
commit effectively replaces OPAL_CHECK_FUNC_LIB with AC_SEARCH_LIBS.

However, we never bothered to add these found libraries to the wrapper
compiler list of libraries used for static linking (doh!).  We've been
getting lucky for quite a while that components were adding the same
libraries to their wrapper compiler LIBS list.  

This is problematic, however, if we don't build some of these
components.  For example, Paul Hargrove noticed that if he configured
with --disable-shared --enable-static --disable-io-romio, ROMIO was no
longer adding some libraries to the wrapper LIBS list -- libraries
that just happened to also be needed by core OPAL/ORTE/OMPI layers.

The solution is not to use AC_CHECK_LIB or OPAL_CHECK_FUNC_LIB, but
use a pair of new macros:

 * OPAL_SEARCH_LIBS_CORE: a wrapper around AC_SEARCH_LIBS.  If we add
   something to $LIBS, then also add it to the wrapper list of static
   libraries.  This is the main piece of functionality that was
   wrong/missing.
 * OPAL_SEARCH_LIBS_COMPONENT: similar to OPAL_SEARCH_LIBS_CORE, but
   instead of directly adding it to the wrapper list of static
   libaries, add it to <framework>_<component>_LIBS (which eventually
   gets slurped up into the wrapper list of static libraries.  See the
   lengthy comment in config/opal_setup_wrappers.m4 near the beginning
   of OPAL_SETUP_WRAPPER_INIT() for a more detailed explanation).
   Most components did this correctly already, but one or two weren't
   right, so I implemented this second macro quite similar to the
   first and put it everywhere we already used AC_SEARCH_LIBS or
   OPAL_CHECK_FUNC_LIB.

This needs to soak for a day or two on the trunk before moving to the
v1.8 branch.

Refs trac:4834

cmr=v1.8.2:reviewer=ggouaillardet

This commit was SVN r32447.

The following Trac tickets were found above:
  Ticket 4834 --> https://svn.open-mpi.org/trac/ompi/ticket/4834
2014-08-07 23:54:45 +00:00
Ralph Castain
552c9ca5a0 George did the work and deserves all the credit for it. Ralph did the merge, and deserves whatever blame results from errors in it :-)
WHAT:    Open our low-level communication infrastructure by moving all necessary components (btl/rcache/allocator/mpool) down in OPAL

All the components required for inter-process communications are currently deeply integrated in the OMPI layer. Several groups/institutions have express interest in having a more generic communication infrastructure, without all the OMPI layer dependencies.  This communication layer should be made available at a different software level, available to all layers in the Open MPI software stack. As an example, our ORTE layer could replace the current OOB and instead use the BTL directly, gaining access to more reactive network interfaces than TCP.  Similarly, external software libraries could take advantage of our highly optimized AM (active message) communication layer for their own purpose.  UTK with support from Sandia, developped a version of Open MPI where the entire communication infrastucture has been moved down to OPAL (btl/rcache/allocator/mpool). Most of the moved components have been updated to match the new schema, with few exceptions (mainly BTLs where I have no way of compiling/testing them). Thus, the completion of this RFC is tied to being able to completing this move for all BTLs. For this we need help from the rest of the Open MPI community, especially those supporting some of the BTLs.  A non-exhaustive list of BTLs that qualify here is: mx, portals4, scif, udapl, ugni, usnic.

This commit was SVN r32317.
2014-07-26 00:47:28 +00:00
Ralph Castain
e11eb15518 Next step of RFC: OMPI_CHECK_FUNC_LIB -> OPAL_CHECK_FUNC_LIB
This commit was SVN r31583.
2014-05-01 14:57:43 +00:00
Hadi Montakhabi
8af6b8b4e4 add support for PLFS filesystem
This commit was SVN r30370.
2014-01-22 21:16:15 +00:00
Jeff Squyres
20d6391734 Patch submitted by Paul Hargrove to fix NetBSD compile with -laio.
NetBSD puts the AIO functions in -lrt, vs. the usual libc.  So we
need the fbtl/posix configure.m4 to test for -lrt properly.

Reviewed by Jeff Squyres.

cmr=v1.7.4:reviewer=ompi-rm1.7:subject=Fix NetBSD use of -laio

This commit was SVN r30274.
2014-01-13 18:49:39 +00:00
Brian Barrett
8b778903d8 Fix longstanding issue with our multi-project support. Rather than using
pkg{data,lib,includedir}, use our own ompi{data,lib,includedir}, which is
always set to {datadir,libdir,includedir}/openmpi.  This will keep us from
having help files in prefix/share/open-rte when building without Open MPI,
but in prefix/share/openmpi when building with Open MPI.

This commit was SVN r30140.
2014-01-07 22:11:15 +00:00
Vishwanath Venkatesan
74c418b860 Adding typecasting with intptr_t to remove warnings.
This commit was SVN r28278.
2013-04-03 17:07:43 +00:00
Nathan Hjelm
9d4a26f47d Update OMPI frameworks to use the MCA framework system.
Notes:
  - This commit also eliminates the need for an available components list in use
    in several frameworks. None of the code in question was making use of the
    priority field of the priority component list item so these extra lists were
    removed.
  - Cleaned up selection code in several frameworks to sort lists using opal_list_sort.
  - Cleans up the ompi/orte-info functions. Expose the functions that construct the
    list of params so they can be used elsewhere.

patches for mtl/portals4 from brian

missed a few output variables in openib

This commit was SVN r28241.
2013-03-27 21:17:31 +00:00
Nathan Hjelm
cf377db823 MCA/base: Add new MCA variable system
Features:
 - Support for an override parameter file (openmpi-mca-param-override.conf).
   Variable values in this file can not be overridden by any file or environment
   value.
 - Support for boolean, unsigned, and unsigned long long variables.
 - Support for true/false values.
 - Support for enumerations on integer variables.
 - Support for MPIT scope, verbosity, and binding.
 - Support for command line source.
 - Support for setting variable source via the environment using
   OMPI_MCA_SOURCE_<var name>=source (either command or file:filename)
 - Cleaner API.
 - Support for variable groups (equivalent to MPIT categories).

Notes:
 - Variables must be created with a backing store (char **, int *, or bool *)
   that must live at least as long as the variable.
 - Creating a variable with the MCA_BASE_VAR_FLAG_SETTABLE enables the use of
   mca_base_var_set_value() to change the value.
 - String values are duplicated when the variable is registered. It is up to
   the caller to free the original value if necessary. The new value will be
   freed by the mca_base_var system and must not be freed by the user.
 - Variables with constant scope may not be settable.
 - Variable groups (and all associated variables) are deregistered when the
   component is closed or the component repository item is freed. This
   prevents a segmentation fault from accessing a variable after its component
   is unloaded.
 - After some discussion we decided we should remove the automatic registration
   of component priority variables. Few component actually made use of this
   feature.
 - The enumerator interface was updated to be general enough to handle
   future uses of the interface.
 - The code to generate ompi_info output has been moved into the MCA variable
   system. See mca_base_var_dump().

opal: update core and components to mca_base_var system
orte: update core and components to mca_base_var system
ompi: update core and components to mca_base_var system

This commit also modifies the rmaps framework. The following variables were
moved from ppr and lama: rmaps_base_pernode, rmaps_base_n_pernode,
rmaps_base_n_persocket. Both lama and ppr create synonyms for these variables.

This commit was SVN r28236.
2013-03-27 21:09:41 +00:00
Ralph Castain
a4b6fb241f Remove all remaining vestiges of the Windows integration
This commit was SVN r28137.
2013-02-28 17:31:47 +00:00
Brian Barrett
b8442ba505 Revamp the handling of wrapper compiler flags. The user flags, main configure
flags, and mca flags are kept seperate until the very end.  The main configure
wrapper flags should now be modified by using the OPAL_WRAPPER_FLAGS_ADD
macro.  MCA components should either let <framework>_<component>_{LIBS,LDFLAGS}
be copied over OR set <framework>_<component>_WRAPPER_EXTRA_{LIBS,LDFLAGS}.
The situations in which WRAPPER CPPFLAGS can be set by MCA components was
made very small to match the one use case where it makes sense.

This commit was SVN r27950.
2013-01-29 00:00:43 +00:00
Vishwanath Venkatesan
ac1dfae007 Perror should say readv in preadv fbtl, currently says writev
This commit was SVN r27610.
2012-11-15 00:57:13 +00:00
Nathan Hjelm
bdedd8b0d3 Per RFC modify the behavior of mca_base_components_close to NOT close the output. Modify frameworks to always close their output and set to -1.
Reasoning: The old behavior was a little confusing. mca_base_components_open does not open an output stream so it is a little unexpected that mca_base_components_close does. To add to this several frameworks (that don't use mca_base_components_close) failed to close their output in the framework close function and others closed their output a second time. This change is an improvement to the symantics of mca_base_components_open/close as they are now symetric in their functionality.

This commit was SVN r27570.
2012-11-06 19:09:26 +00:00
Edgar Gabriel
6a2dd16ee3 cleaning up the usage of CFLAGS vs. CPPFLAGS. Thanks Jeff for helping with
that!

This commit was SVN r26655.
2012-06-25 20:32:58 +00:00
Jeff Squyres
7fb1144d27 Add missing AC_CONFIG_FILES
This commit was SVN r25974.
2012-02-20 22:59:03 +00:00
Jeff Squyres
6a109c8e15 Ensure that we have aio.h before trying to compile this component.
This commit was SVN r25966.
2012-02-20 15:53:20 +00:00
Edgar Gabriel
e0139a2d7e provide descriptions about the functionality of these frameworks.
This commit was SVN r25682.
2011-12-22 19:42:00 +00:00
Jeff Squyres
c10f41c87e Do not build these frameworks when --disable-mpi-io is specified.
Fixes some Cisco MTT MPI install errors.

This commit was SVN r25566.
2011-12-02 22:11:23 +00:00
Vishwanath Venkatesan
8dd07bdceb Removing .ompi_ignore and .ompi_unignore from fs/pvfs2 and fbtl/pvfs2
This commit was SVN r25283.
2011-10-14 00:40:11 +00:00
George Bosilca
ce7935c8fa Obviously these were not needed.
This commit was SVN r25231.
2011-10-04 14:56:34 +00:00
Edgar Gabriel
196c3819e2 - revamp the configure logic to detect pvfs2 and lustre
- slight change in the selection logic of the fs module, which makes
   the ompio independent of the file system type (otherwise ompio 
   would also have required a configure script).

This commit was SVN r25118.
2011-09-07 10:39:47 +00:00
Shiqing Fan
16193771ba Add one missing header file. Fix the MTT build for Windows.
This commit was SVN r25112.
2011-08-31 13:15:05 +00:00
Edgar Gabriel
9b6cf80074 - update the svn:ignore properties for some generated files
- add ompi_unignore files for the pvfs2 and lustre components to debug the
  configure problem

This commit was SVN r25090.
2011-08-26 13:23:29 +00:00
Edgar Gabriel
f46ef05c6e ompi_ignore some components that depend on the configure logic, since some
libs don't seem to propagate correctly under certain circumstances. This makes
hopefully the nightly tests pass.

also, remove the files that should not have been committed in the first place
:-)

This commit was SVN r25085.
2011-08-26 00:49:32 +00:00
Edgar Gabriel
52063267df commit of the OMPIO modules and frameworks.
This commit was SVN r25079.
2011-08-25 20:08:17 +00:00