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Граф коммитов

29020 Коммитов

Автор SHA1 Сообщение Дата
Joshua Ladd
7bfcd4545d OSHMEM Specification version: Bump to v1.4
Signed-off-by: Joshua Ladd <jladd.mlnx@gmail.com>
2018-07-18 00:23:24 +03:00
Joshua Ladd
3add13c72e
Merge pull request #5441 from hoopoepg/topic/ucx-memhooks-to-common-module
MCA/COMMON/UCX: shift opal memhooks into common UCX
2018-07-17 15:52:44 -04:00
Thananon Patinyasakdikul
033c364ee0 btl/ofi: Added FI_CONTEXT as requirement.
OFI BTL uses context for completion but never ask for it in
fi_getinfo(3). This commit makes sure that we always ask for FI_CONTEXT
to eliminate any potential error.

Signed-off-by: Thananon Patinyasakdikul <thananon.patinyasakdikul@intel.com>
2018-07-17 12:18:43 -07:00
Matias Cabral
be3cb01cb4
Merge pull request #5397 from nrspruit/ns_ofi_mtl_ssend
MTL OFI: Redesign sync send with reduced tag bits and quick ack
2018-07-17 10:14:33 -07:00
Sergey Oblomov
a4b8253fa2 MCA/COMMON/UCX: fixed initialization of malloc hooks
Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
2018-07-17 20:09:50 +03:00
Gaëtan Bossu
8522ba112c MCA/IO/OMPIO: fix MPI_File_delete implementation.
OMPIO now uses the correct delete function depending on the fs

mca_common_ompio_file_delete now works this way instead
of calling POSIX unlink:
 - create a minimal file handle with the given file name
 - select the best fs component using this file handle
 - call the component-specific file delete function

Signed-off-by: Gaëtan Bossu <gbossu@ddn.com>
2018-07-17 18:17:13 +02:00
Gaëtan Bossu
ac6f75e3d1 MCA/FS: check communicator validity in query functions
It is needed because the fs components might be queried due to a MPI_File_delete call.
And in this case, we don't have a communicator value.

Signed-off-by: Gaëtan Bossu <gbossu@ddn.com>
2018-07-17 18:16:21 +02:00
Josh Hursey
9aa5168795
Merge pull request #5353 from ggouaillardet/topic/romio321_grequests
io/romio321: make grequest extensions internal
2018-07-17 10:53:53 -05:00
Gilles Gouaillardet
1a41482720 coll/libnbc: do not recursively call opal_progress()
instead of invoking ompi_request_test_all(), that will end up
calling opal_progress() recursively, manually check the status
of the requests.

the same method is used in ompi_comm_request_progress()

Refs open-mpi/ompi#3901

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-07-17 09:45:08 -06:00
Sergey Oblomov
1c7ae22dfb MCA/COMMON/UCX: shift opal memhooks into common UCX
Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
2018-07-17 13:46:38 +03:00
Spruit, Neil R
d4f408a7f8 MTL OFI: MTL_OFI_RETRY_UNTIL_DONE support for Resource overflow
- Added support in MTL_OFI_RETRY_UNTIL_DONE to handle -FI_EAGAIN
  from the provider and correctly attempt to progress the OFI Completion
  queue by calling ompi_mtl_ofi_progress.

- If events were pending that blocked OFI operations from being enqueued
  they will be completed and the OFI operation will be retried once
  ompi_mtl_ofi_progress has successfully completed.

- Updated MTL_OFI_RETRY_UNTIL_DONE to take a RETURN variable instead of
  requiring the existance of a "ret" variable to pass back the return
  value from completing the OFI operation.

Signed-off-by: Spruit, Neil R <neil.r.spruit@intel.com>
2018-07-17 03:00:38 -07:00
Yossi Itigin
9a8797a6be
Merge pull request #5440 from hoopoepg/topic/atomic-fix-build-issue
ATOMIC: fixed build issues (incorrect function proto)
2018-07-17 12:21:39 +03:00
Sergey Oblomov
36cc69d47a ATOMIC: fixed build issues (incorrect function proto)
Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
2018-07-17 10:32:15 +03:00
Gilles Gouaillardet
47351b7fac mpiext/pcollreq: Add Fortran use-mpi-f08 bindings
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-07-17 16:29:41 +09:00
Kurita, Takehiro
73e038ec18 mpiext/pcollreq: Add Fortran use-mpi bindings
Signed-off-by: Kurita, Takehiro <fj6370fp@aa.jp.fujitsu.com>
2018-07-17 16:29:41 +09:00
Gilles Gouaillardet
9e0115c980 mpiext/pcollreq: Add Fortran mpif-h bindings
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-07-17 16:29:33 +09:00
Gilles Gouaillardet
44110a575d mpiext/pcollreq: do include PMPIX_* subroutines to C bindings
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-07-17 16:29:33 +09:00
KAWASHIMA Takahiro
2ac08ddfb6
Merge pull request #5435 from kawashima-fj/pr/fortran-iscatter-inplace
mpi/fortran: Fix IN_PLACE detection of ISCATTER(V)
2018-07-17 15:07:47 +09:00
KAWASHIMA Takahiro
5ddf0f6418 mpi/fortran: Fix IN_PLACE detection of ISCATTER(V)
Blocking `MPI_SCATTER` and `MPI_SCATTERV` were fixed in 506d0e96f4
but noblocking `MPI_ISCATTER` and `MPI_ISCATTERV` were not fixed yet.

Signed-off-by: KAWASHIMA Takahiro <t-kawashima@jp.fujitsu.com>
2018-07-17 14:15:21 +09:00
Joshua Ladd
1f4829b874
Merge pull request #5265 from xinzhao3/topic/openshmem-v1.4
OMPI/OSHMEM: add new functionality of OpenSHMEM v1.4.
2018-07-16 17:37:42 -04:00
Xin Zhao
c429900cd9 OMPI/OSHMEM: add new functionality of OpenSHMEM v1.4.
Signed-off-by: Xin Zhao <xinz@mellanox.com>
2018-07-16 12:55:25 -07:00
Yossi Itigin
9d0b3a42aa
Merge pull request #5423 from hoopoepg/topic/bitwise-atomics-renaming
ATOMICS: renamed atomic calls to unsigned datatypes
2018-07-16 19:08:02 +03:00
Mikhail Kurnosov
ba83cc91eb coll/base: add MPI_Bcast based on a binomial tree scatter followed by a ring allgather
Implements MPI_Bcast using a binomial tree scatter followed by a ring allgather.

Signed-off-by: Mikhail Kurnosov <mkurnosov@gmail.com>
2018-07-16 08:56:09 -06:00
Sergey Oblomov
da1afcaaaf ATOMIC/UCX: fixed typo in datatype macro
Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
2018-07-16 14:49:06 +03:00
Yossi Itigin
27b91d7564
Merge pull request #5425 from hoopoepg/topic/atomic-mxm-abstraction-viola-master
ATOMIC/MXM: fixed abstraction violation
2018-07-15 10:51:29 +03:00
Gilles Gouaillardet
99e0f96155
Merge pull request #5413 from ggouaillardet/topic/pcollreq
mpiext/pcollreq: check subroutine parameters and add profiling symbols
2018-07-14 15:02:02 +09:00
Gilles Gouaillardet
61b3308871 mpiext/pcollreq: check subroutine parameters and add profiling symbols
- check subroutine parameters
 - implement PMPIX_* subroutines

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-07-14 14:14:37 +09:00
Gilles Gouaillardet
dec1663364 spc: add missing subroutines
add counters for :
 - MPI_Exscan
 - MPI_Iexscan
 - MPI_Igatherv

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-07-14 14:14:37 +09:00
Ralph Castain
9831145020
Merge pull request #5427 from rhc54/topic/px
Remove the PMIx ext4x component
2018-07-13 20:43:09 -07:00
Ralph Castain
4a596d35f7 Remove the PMIx ext4x component
Update configury to redirect anything at or above v3 to the ext3x component

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2018-07-13 19:51:50 -07:00
Howard Pritchard
9a5fd48388
Merge pull request #5079 from jsquyres/pr/fortran-is-the-devil
status_set_cancelled: fix F08 binding
2018-07-13 15:36:02 -05:00
Joshua Ladd
b12868239c
Merge pull request #4765 from xinzhao3/topic/osc-ucx-mem-hook
OMPI/OSC/UCX: move memory hooks init in osc to win creation.
2018-07-13 09:36:20 -04:00
Sergey Oblomov
bd84165277 ATOMICS: renamed atomic calls to unsigned datatypes
Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
2018-07-13 15:32:16 +03:00
Sergey Oblomov
d51426ff0a ATOMIC/MXM: fixed abstraction violation
- applied workaround for incorrect dynamic module dependency

Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
2018-07-13 14:30:12 +03:00
Xin Zhao
74ef51af1b OMPI/OSC/UCX: move memory hooks init in osc to win creation.
Move memory hooks init (for request based operation) in osc ucx to window
creation time, to avoid performance issue in MPI initialization.

Signed-off-by: Xin Zhao <xinz@mellanox.com>
2018-07-12 15:03:02 -07:00
Nathan Hjelm
9d3a79925b btl/vader: fix bugs in rma emulation
This commit fixes two bugs in the RMA/atomic emulation code:

 1) Fix a fragment leak when using AMO emulation.

 2) Always initialize the single-copy emulation code. This is required
 to use the AMO support.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2018-07-12 15:50:50 -06:00
Nathan Hjelm
304a6a52d4 osc/rdma: use local base for local process when possible
This commit fixes a crash that occurs when using btl/vader as an RDMA
btl. This btl supports using CPU atomics and does not support using
the btl for self communication so we must use the local memory
optimizations in osc/rdma.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2018-07-12 15:50:50 -06:00
KAWASHIMA Takahiro
c87a3df0c9
Merge pull request #5416 from kawashima-fj/pr/coll-libnbc-suppress-warnings
coll/libnbc: Suppress compiler warnings
2018-07-12 15:45:59 +09:00
KAWASHIMA Takahiro
98aba03632
Merge pull request #5415 from kawashima-fj/pr/pending-bsend-fix
pml/ob1: Fix data corruption of MPI_BSEND
2018-07-12 15:45:46 +09:00
KAWASHIMA Takahiro
37a05e74aa coll/libnbc: Suppress compiler warnings
Signed-off-by: KAWASHIMA Takahiro <t-kawashima@jp.fujitsu.com>
2018-07-12 14:42:39 +09:00
KAWASHIMA Takahiro
0021616984 pml/ob1: Fix data corruption of MPI_BSEND
Data transferred by `MPI_BSEND` may corrupt if all of the following
conditions are met.

- The message size is less than the eager limit.
- The `btl_alloc` function in the BTL interface returns `NULL`
  for some reason.
- The MPI program overwrites the send buffer after `MPI_BSEND`
  returns.

The problem is in the way of pending a send request in ob1 PML.
The `mca_pml_ob1_send_request_start_copy` function retruns
`OMPI_ERR_OUT_OF_RESOURCE` if `mca_bml_base_alloc` function returns
`des = NULL`. In this case, the send request is added to the
`send_pending` list and `MPI_BSEND` returns immediately. Next time
the `mca_pml_ob1_send_request_start_copy` function tries sending,
the user buffer may have been overwritten by the MPI program.

Call hierarchy of `MPI_BSEND`:

```
  MPI_Bsend
    mca_pml_ob1_send
      if (MCA_PML_BASE_SEND_BUFFERED == sendmode)
        mca_pml_ob1_isend
          MCA_PML_OB1_SEND_REQUEST_START_W_SEQ
            mca_pml_ob1_send_request_start_seq
              mca_pml_ob1_send_request_start_btl
                if (size <= eager_limit)
                  if (req_send_mode == MCA_PML_BASE_SEND_BUFFERED)
                    mca_pml_ob1_send_request_start_copy
                      mca_bml_base_alloc
                        btl_alloc
              if (OMPI_ERR_OUT_OF_RESOURCE == rc)
                add_request_to_send_pending
        ompi_request_free
```

To solve this problem, we should save the data to the buffer
attached by `MPI_BUFFER_ATTACH` before leaving `MPI_BSEND`.

This problem was introduced by ob1 optimization (commits 2b57f422
and a06e491c) in v1.8 series.

Signed-off-by: KAWASHIMA Takahiro <t-kawashima@jp.fujitsu.com>
2018-07-12 14:30:58 +09:00
Howard Pritchard
34bc77747c
Merge pull request #5388 from mkurnosov/base-gather-bmtree-fix-mpi-in-place
coll/base/gather_intra_binomial: fix MPI_IN_PLACE processing
2018-07-11 18:34:35 -05:00
Nathan Hjelm
35a75a6bf5 osc/sm: avoid filename collision when multiple windows share same CID
This commit fixes an issue identified by MTT where we can have two
different sets of processes on the same node creating a shared memory
window with communicators sharing the same CID. To avoid this issue
the temporary filename now includes the creating processes vpid.

References #5363

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2018-07-11 14:32:27 -06:00
Ralph Castain
22a13e34d8
Merge pull request #5400 from rhc54/topic/extpmix
Default to external PMIx installation
2018-07-10 17:19:41 -07:00
Nathan Hjelm
037656bc1d osc/rdma: fix bug introduced in b90c838
This commit fixes an bug that was introduced back in 2016 which
impacts request-based RMA in some cases.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2018-07-10 18:17:55 -06:00
Ralph Castain
aeb415a3d0 Add warning for PMIx v1.2.x - dynamic ops not supported
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2018-07-10 16:24:21 -07:00
Ralph Castain
09963affba Further detail check for external PMIx
Per today's telecon, check for supported version and do not use anything less than 1.2.x. Sadly, we don't include the last piece of the version triplet in the version file and so we cannot check for 1.2.5.

If someone explicitly points us at an external installation that isn't acceptable, then error out

Add PMIx support to summary

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2018-07-10 16:12:52 -07:00
Ralph Castain
fdca304268 Default to external PMIx installation
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2018-07-10 16:12:52 -07:00
Ralph Castain
55357ce9be
Merge pull request #5406 from rhc54/topic/dyn
Control inheritance of launch directives by child jobs
2018-07-10 16:12:04 -07:00
Ralph Castain
6b6e63a346 Control inheritance of launch directives by child jobs
Do not have child jobs inherit launch directives unless requested to do so. This affects the map-by, rank-by, bind-to, npernode, pernode, npersocket, persocket, and cpus-per-rank directives. Values provided in the spawn call always take precedence - if a particular value isn't specified, then the ORTE defaults will be used if inheritance is not requested, and the values specified by MCA param will be used if inheritance is set.

Always inherit oversubscribe for now as otherwise MTT will break

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2018-07-10 15:12:05 -07:00