Make sure to get an RDM provider that can provide both local and
remote communication. We need this check because some providers could
be selected via RXD or RXM, but can't provide local communication, for
example.
Add OPAL_CHECK_OFI_VERSION_GE() m4 macro to check that the Libfabric
we're building against is >= a target version. Use this check in two
places:
1. MTL/OFI: Make sure it is >= v1.5, because the FI_LOCAL_COMM /
FI_REMOTE_COMM constants were introduced in Libfabric API v1.5.
2. BTL/usnic: It already had similar configury to check for Libfabric
>= v1.1, but the usnic component was checking for >= v1.3. So
update the btl/usnic configury to use the new macro and check for
>= v1.3.
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
(cherry picked from commit 21bc9042e1)
Signed-off-by: Brian Barrett <bbarrett@amazon.com>
Updated the OFI MTL's Recv cancel to be a non-blocking call to match
the MPI spec. Given fi_cancel succeeded, then it is expected that the
user will wait on the request to read the result of if the cancel has
completed.
Signed-off-by: Spruit, Neil R <neil.r.spruit@intel.com
(cherry picked from commit 25bdd118ac)
Signed-off-by: Brian Barrett <bbarrett@amazon.com>
For the non thread-grouping paths, only the first (0th) OFI context
should be used for communication. Otherwise this would access a non existant
array item and cause segfault.
While at it, clarifiy some content regarding SEPs in README (Credit to Matias Cabral
for README edits).
Signed-off-by: Aravind Gopalakrishnan <Aravind.Gopalakrishnan@intel.com>
(cherry picked from commit 6edcc479c4)
Signed-off-by: Brian Barrett <bbarrett@amazon.com>
Replace all tabs with spaces. No code or logic changes.
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
(cherry picked from commit aba2571881)
Signed-off-by: Brian Barrett <bbarrett@amazon.com>
When we exceed the threshold number of contexts created, print appropriate help
text
Signed-off-by: Aravind Gopalakrishnan <Aravind.Gopalakrishnan@intel.com>
(cherry picked from commit 9cabcfdbba)
Signed-off-by: Brian Barrett <bbarrett@amazon.com>
Provide the av_attr.count hint (number of addresses that will be
inserted into the address vector through the life of the process)
at initialization of the address vector. It's ok to be a bit
wrong, but some endpoints (RxR) can benefit by not going through
the slow growth realloc churn.
Signed-off-by: Brian Barrett <bbarrett@amazon.com>
(cherry picked from commit 44be7f139a)
Signed-off-by: Brian Barrett <bbarrett@amazon.com>
With MTLs, there's no "other transport" when the remote side
does not have an active NIC, so we should print a useful error
message when the modex failed (indicating lack of a NIC on
the remote side).
Signed-off-by: Brian Barrett <bbarrett@amazon.com>
(cherry picked from commit fe25097194)
Signed-off-by: Brian Barrett <bbarrett@amazon.com>
Moving to a model where we have users actively _enable_ SEP feature for use
rather than opening SEP by default if provider supports it. This allows us to
not regress (either functionally or for performance reasons) any apps that were
working correctly on regular endpoints.
Also, providing MCA to specify number of OFI contexts to create and default
this value to 1 (Given btl/ofi also creates one by default, this reduces the
incidence of a scenario where we allocate all available contexts by default and
if btl/ofi asks for one more, then provider breaks as it doesn't support it).
While at it, spruce up README on SEP content.
Signed-off-by: Aravind Gopalakrishnan <Aravind.Gopalakrishnan@intel.com>
(cherry picked from commit 37f9aff2a0)
Signed-off-by: Brian Barrett <bbarrett@amazon.com>
-> Added new targets in Makefile.am to call a new build script
generate-opt-funcs.pl to generate specialized functions for
each *.pm file.
-> Added new perl module *.pm files for send,isend,irecv,iprobe,improbe
which are loaded by generate-opt-funcs.pl to create new source files
that correspond to the name of the .pm file to be used as part of
MTL OFI.
-> Added mtl_ofi_opt.pm.template and updated README with details on the
specialization features and how to add additional specialization
support.
-> Added new opt_common/mtl_ofi_opt_common.pm containing common
functions for generating the specialized functions used by
all other *.pm modules.
-> Added new mtl_ofi.h which includes the definitions for the
function symbol table for storing the specialized functions along
with the definitions for the initialization functions for the
corresponding function pointers.
-> Based off the OFI provider capabilities the specialized function
pointers are assigned at mtl_ofi_component_init to the corresponding
MTL OFI function.
-> mca_mtl_ofi_module_t has been updated with the symbol table
struct which is assigned at component init.
Signed-off-by: Spruit, Neil R <neil.r.spruit@intel.com>
(cherry picked from commit bef5f50a42)
Signed-off-by: Brian Barrett <bbarrett@amazon.com>
For cases when the number of local processes is greater than the number of
available contexts, the SEP initialization phase would calculate the number of
contexts to provision for each rank to be 0 and would eventually crash.
Fix the issue here by using regular endpoints in the event the number of local
processes is more than available contexts. This fixes issue #6182.
Signed-off-by: Aravind Gopalakrishnan <Aravind.Gopalakrishnan@intel.com>
(cherry picked from commit e5e19dfcf7)
Signed-off-by: Brian Barrett <bbarrett@amazon.com>
Commit 109d0569ff introduced a crash when an error occurred
before ofi_ctxt was allocated, including when no providers
passed the selection logic. Properly check that the pointer
is not NULL in the error cleanup code before dereferencing
the pointer.
Signed-off-by: Brian Barrett <bbarrett@amazon.com>
(cherry picked from commit 6e15128d96)
Signed-off-by: Brian Barrett <bbarrett@amazon.com>
OFI MTL supports OFI Scalable Endpoints feature as means to improve
multi-threaded application throughput and message rate. Currently the feature
is designed to utilize multiple TX/RX contexts exposed by the OFI provider in
conjunction with a multi-communicator MPI application model. For more
information, refer to README under mtl/ofi.
Reviewed-by: Matias Cabral <matias.a.cabral@intel.com>
Reviewed-by: Neil Spruit <neil.r.spruit@intel.com>
Signed-off-by: Aravind Gopalakrishnan <Aravind.Gopalakrishnan@intel.com>
(cherry picked from commit 109d0569ff)
Signed-off-by: Brian Barrett <bbarrett@amazon.com>
When an application is not using multiple threads to call into MPI, we can
safely ask for FI_THREAD_DOMAIN setting from the provider as it should
translate to the least amount of locking in provider.
Conversely, for applications using THREAD_MULTIPLE, explicitly ask for
FI_THREAD_SAFE to prevent race conditions.
Signed-off-by: Aravind Gopalakrishnan <Aravind.Gopalakrishnan@intel.com>
(cherry picked from commit 5cbcae79d8)
Signed-off-by: Brian Barrett <bbarrett@amazon.com>
OFI providers may reserve some of the upper bits of the tag for
internal usage and expose it using mem_tag_format. Check for that
and adjust communicator bits as needed.
Signed-off-by: Aravind Gopalakrishnan <Aravind.Gopalakrishnan@intel.com>
(cherry picked from commit d996f529c0)
Signed-off-by: Brian Barrett <bbarrett@amazon.com>
As discussed, a feature is being added to libpsm2 to correctly handle
the case where the library is opened by multiple OMPI transports in the same
process. (For example, the OFI BTL and the PSM2 MTL).
* Improved error message to indicate required libpsm2 version.
* Adds a test at autogen/configure time for the existence of
PSM2_LIB_REFCOUNT_CAP.
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
Signed-off-by: Michael Heinz <michael.william.heinz@intel.com>
(cherry picked from commit f10305a49f)
This is a fix based on a bugreport on github/mailing list from CGNS.
The core of the problem was that different processes entered different branches of
our aggregator selection logic, due to the fact that in some cases processes had
a matching file_view size and contiguous chunk size (thus assuming 1-D distribution),
and some processes did not (thus assuming 2-D distribution). The fix is to calculate
the avg. file view size across all processes and use this value, thus ensuring that
all processes enter the same branch.
Fixes issue #7809
Signed-off-by: Edgar Gabriel <egabriel@central.uh.edu>
(cherry picked from commit 4a8a330bba)
Keep all comments in the user-facing mpi.h.in as "old style" C
comments: /* */. This gives us maximum portability, just on the off
chance that a user's C compiler does not support //-style comments.
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
(cherry picked from commit d522c27037)
1. __STDC_VERSION__ isn't necessarily defined (e.g., by C++
compilers). So check to make sure it is defined before we actually
check the value.
2. If we're in C++11 (or later), use static_assert().
3. Split the static assert macro in two macros:
* THIS_SYMBOL_WAS_REMOVED_IN_MPI30(...): Insert a valid expression
(i.e., 0, because it's only used with MPI_Datatype values, and
since MPI_Datatype is a pointer, 0 is a valid RHS expression)
before invoking the static assert so that we don't get a syntax
error instead of the actual static assert error.
* THIS_FUNCTION_WAS_REMOVED_IN_MPI30(...): No need for the valid
expression; just invoke the assert functionality.
Also remove an errant "\".
Thanks to Constantine Khrulev and Martin Audet for identifying the
issue and suggesting to use C11's static_assert().
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
(cherry picked from commit 835f8f1834)
- added detection of new API into configuration
- added tag_send call implemented using new API
- added MPI_Send/MPI_Isend/MPI_Recv/MPI_Irecv implementations
Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
(cherry picked from commit 75bda25ddb)
The locality for remote procs is not provided as it is only a local
concept. Thus, you must always use modex_recv_optional to ensure you
don't hang waiting for a response until dmodex times out.
Signed-off-by: Ralph Castain <rhc@pmix.org>
An incorrect backport in open-mpi/ompi#7360 removed
constants.c from ompi/mpi/fortran/use-mpi-f08/base/Makefile.am
This one off commit fixes that, and move constants.h from
ompi/mpi/fortran/use-mpi-f08 to ompi/mpi/fortran/use-mpi-f08/base
Fixesopen-mpi/ompi#7616
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
As indicated in the MPI3.2 document 14.3.10 page 599 line 1, the only
MPI error code possible is MPI_SUCCESS. All other errors must be in the
error class MPI_T_ERR*.
Fix the return of few pvar/cvar function that failed to correctly
convert to an MPI error code.
Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
(cherry picked from commit f4af1848c9)
This fix ensures that all progress functions return the number of
completed events.
Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
(cherry picked from commit 72501f8f9c)
- fix a typo `alloc_shared_contig` to `alloc_shared_noncontig`
- correct the value of `blocking_fence`
Signed-off-by: Tsubasa Yanagibashi <fj2505dt@aa.jp.fujitsu.com>
(cherry picked from commit a07a83d189)
This commit changes the behavior of the individual sharedfp component. If
the component cannot create either the datafile or the metadatafile during File_open,
no error is being raised going forward. This allows applications that do not use shared
file pointer operations to continue execution without any issue.
If the user however subsequently calls MPI_File_write_shared or similar operations, an error
will be raised.
Fixes issue #7429
Signed-off-by: Edgar Gabriel <egabriel@central.uh.edu>
(cherry picked from commit df6e3e503a)
This commit increaes the osc_rdma_max_attach variable from 32
to 64. The new default is kept low due to the small number
of registration resources on some systems (Cray Aries). A
larger max attachement value can be set by the user on other
systems.
Signed-off-by: Nathan Hjelm <hjelmn@google.com>
(cherry picked from commit 54c8233f4f)
Signed-off-by: Nathan Hjelm <hjelmn@google.com>
This commit addresses two issues in osc/rdma:
1) It is erroneous to attach regions that overlap. This was being
allowed but the standard does not allow overlapping attachments.
2) Overlapping registration regions (4k alignment of attachments)
appear to be allowed. Add attachment bases to the bookeeping
structure so we can keep better track of what can be detached.
It is possible that the standard did not intend to allow #2. If that
is the case then #2 should fail in the same way as #1. There should
be no technical reason to disallow #2 at this time.
References #7384
Signed-off-by: Nathan Hjelm <hjelmn@google.com>
(cherry picked from commit 6649aef8bd)
Signed-off-by: Nathan Hjelm <hjelmn@google.com>
Automake's Fortran compilation rules inexplicably use CPPFLAGS and
AM_CPPFLAGS. Unfortunately, this can cause problems in some cases
(e.g., picking up already-installed mpi.mod in a system-default
include search path).
So in relevant module-using Fortran compilation Makefile.am's, zero
out CPPFLAGS and AM_CPPFLAGS.
This has a side-effect of requiring that we compile the one .c file in
the F08 library in a new, separate subdirectory (with its own
Makefile.am that does _not_ have CPPFLAGS/AM_CPPFLAGS zeroed out).
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
(cherry picked from commit ab398f4b9a)
These -D's are for C compilation, not Fortran compilation. Remove
this useless statement.
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
(cherry picked from commit f4a47a5a8e)
Fix the C types for the following:
* MPI_UNWEIGHTED
* MPI_WEIGHTS_EMPTY
* MPI_ARGV_NULL
* MPI_ARGVS_NULL
* MPI_ERRCODES_IGNORE
There is lengthy discussion on
https://github.com/open-mpi/ompi/pull/7210 describing the issue; the
gist of it is that the C and Fortran types for several MPI global
sentenial values should agree (specifically: their sizes must(**)
agree). We erroneously had several of these array-like sentinel
values be "array-like" values in C. E.g., MPI_ERRCODES_IGNORE was an
(int *) in C while its corresponding Fortran type was "integer,
dimension(1)". On a 64 bit platform, this resulted in C expecting the
symbol size to be sizeof(int*)==8 while Fortran expected the symbol
size to be sizeof(INTEGER, DIMENSION(1))==4.
That is incorrect -- the corresponding C type needed to be (int).
Then both C and Fortran expect the size of the symbol to be the same.
(**) NOTE: This code has been wrong for years. This mismatch of types
typically worked because, due to Fortran's call-by-reference
semantics, Open MPI was comparing the *addresses* of these instances,
not their *types* (or sizes) -- so even if C expected the size of the
symbol to be X and Fortran expected the size of the symbol to be Y
(where X!=Y), all we really checked at run time was that the addresses
of the symbols were the same. But it caused linker warning messages,
and even caused errors in some cases.
Specifically: due to a GNU ld bug
(https://sourceware.org/bugzilla/show_bug.cgi?id=25236), the 5 common
symbols are incorrectly versioned VER_NDX_LOCAL because their
definitions in Fortran sources have smaller st_size than those in
libmpi.so.
This makes the Fortran library not linkable with lld in distributions
that ship openmpi built with -Wl,--version-script
(https://bugs.llvm.org/show_bug.cgi?id=43748):
% mpifort -fuse-ld=lld /dev/null
ld.lld: error: corrupt input file: version definition index 0 for symbol
mpi_fortran_argv_null_ is out of bounds
>>> defined in /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_usempif08.so
...
If we fix the C and Fortran symbols to actually be the same size, the
problem goes away and the GNU ld bug does not come into play.
This commit also fixes a minor issue that MPI_UNWEIGHTED and
MPI_WEIGHTS_EMPTY were not declared as Fortran arrays (not fully fixed
by commit 107c0073dd).
Fixesopen-mpi/ompi#7209
Signed-off-by: Fangrui Song <i@maskray.me>
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
(cherry picked from commit 5609268e90)
Until now sqrt(n) was missed as a factor for odd square numbers n. This
lead to suboptimal results of MPI_Dims_create for input numbers like 9,
25, 49, ... Fix the results by including sqrt(n) in the search for
factors.
Refs: #7186
Signed-off-by: Michael Lass <bevan@bi-co.net>
(cherry picked from commit 67490118ad)
Compiling OMPI on cray systems using latest Cray compilers (clang based)
yielded some compiler warnings from ompio/lustre. Squash these warnings.
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
(cherry picked from commit e66a7cef11)
Signed-off-by: Geoffrey Paulsen <gpaulsen@us.ibm.com>
Change the provider include and exclude list name comparison check to
ignore case. The UDP provider's name is uppercase and was being selected
despite being in the exclude list.
Signed-off-by: Robert Wespetal <wesper@amazon.com>
(cherry picked from commit 9b72e9465d)
When the provider does not support FI_REMOTE_CQ_DATA, the OFI tag does not have
sizeof(int) bits for the rank. Therefore, unexpected behavior will occur when
this limit is crossed.
Check the max allowed number of ranks during add_procs() and return if there is
danger of exceeding this threshold.
Signed-off-by: Aravind Gopalakrishnan <Aravind.Gopalakrishnan@intel.com>
(cherry picked from commit 5cf43de445)
This commit updates the coll/basic component to correctly order sends
and receives for cartesian communicators with cyclic boundaries. This
addresses an issue identified by mpi-forum/mpi-issues#153. This issue
occurs when the size in any dimension is 1. This gives the same
neighbor in the positive and negative directions. The old code was
sending and receiving in the same order so the -1 buffer contained
the +1 result and vise-versa. The problem is addressed by using
unique tags for each send. This should cover both the case where
overtaking is allowed and is not allowed. The former case will be
possible is a MPI_Cart_create_with_info() call is added to the
standard.
Signed-off-by: Nathan Hjelm <hjelmn@google.com>
(cherry picked from commit 196a91e604)
Squash compiler warning.
ROMIO is third-party software but has an annoying compiler warning;
this is the minimum distance fix.
Signed-off-by: William Bailey <wbailey2@nd.edu>
(cherry picked from commit 30bda56bce)
Squash compiler warning due to whitespace/brace problems.
The code block from lines 829-839 was improperly indented, which led to
both the code being confusing and a compiler warning. Comparing this code to
the current version in the MPICH repo made it clear that the code was simply
improperly indented. Fixing the indentation both makes the code readable and
squashes the compiler warning.
Signed-off-by: Maxwell Coil <mcoil@nd.edu>
(cherry picked from commit 8c237e2684)
This commit fixes a segfault in mtl-portals4 finalize(). The segfault
occurs if finalize() is called without any calls to add_procs(). This
commit resolves the segfault by skipping the flow control fini() call if
Portals4 was not initialized.
Signed-off-by: Todd Kordenbrock <thkgcode@gmail.com>
(cherry picked from commit e7b867c044)
Squash compiler warning. Changed output specifier to match variable type (long int -> long long int).
Signed-off-by: William Bailey <wbailey2@nd.edu>
(cherry picked from commit e2718e0196)
in schizo/ompi, sets the new OMPI_MCA_mpi_oversubscribe environment
variable according to the node oversubscription state.
This MCA parameter is used to set the default value of the
mpi_yield_when_idle parameter.
This two steps tango is needed so the mpi_yield_when_idle setting
is always honored when set in a config file.
Refs. open-mpi/ompi#6433
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
(cherry-picked from cc97c0f611)
In fcoll_two_phase_supprot_fns.c: calculation of the aggregator index
failed for large offsets on 32bit machine, due to improper handling of
64bit offsets.
Fixes Issue #7110
Signed-off-by: Edgar Gabriel <egabriel@central.uh.edu>
(cherry picked from commit ea1355beae)
This is based on a bug reported on the mailing list using a netcdf testcase.
The problem occurs if processes are using a custom file view, but on some
of them it appears as if the default file view is being used. Because of that,
the simple-grouping option lead to different number of aggregators used on different
processes, and ultimately to a deadlock. This patch fixes the problem by not using
the file_view size anymore for the calculation in the simple-grouping option,
but the contiguous chunk size (which is identical on all processes).
Fixes issue #7109
Signed-off-by: Edgar Gabriel <egabriel@central.uh.edu>
(cherry picked from commit ad5d0df4e9)
In order to work around an issue with flang based compilers,
avoid declaring bind(C) constants and use plain Fortran parameter
instead.
For example,
type(MPI_Comm), bind(C, name="ompi_f08_mpi_comm_world") OMPI_PROTECTED :: MPI_COMM_WORLD
is changed to
type(MPI_Comm), parameter :: MPI_COMM_WORLD = MPI_Comm(OMPI_MPI_COMM_WORLD)
Note that in order to preserve ABI compatibility, ompi/mpi/fortran/use-mpi-f08/constants.{c,h}
have been kept even if its symbols are no more referenced by Open MPI.
Refs. open-mpi/ompi#7091
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
(back-ported from commit open-mpi/ompi@b10a60a5a9)
Though the MPI standard does not have `MPI_CXX_COMPLEX`, `mpi.h`,
`mpif.h`, and `mpi.mod` have it. So I added it for consistency.
Signed-off-by: KAWASHIMA Takahiro <t-kawashima@jp.fujitsu.com>
(cherry picked from commit open-mpi/ompi@63ecf01610)
individual read/write operations exceeding 2GB fail in ompio
due to improper conversions from size_t to int in two different
locations. This commit fixes an issue reported by Richard Warren
from the HDF5 group.
Fixes Issue #7045
Cherry-picked from commit a130f569df
Signed-off-by: Edgar Gabriel <egabriel@central.uh.edu>
Change the ncounts argument to MPI_Count and use
MPI_Status_set_elements_x for enabling read/write operations beyond
the 2GB limit.
Thanks to Richard Warren from the HDF5 group for reporting the issue
and providing the suggested fix for romio.
Signed-off-by: Edgar Gabriel <egabriel@central.uh.edu>
(cherry picked from commit 8a3abbf803)
INTERNAL: STL-59403
The OFI (libfabric) MTL does not respect the maximum message size
parameter that OFI provides in the fi_info data.
This patch adds this missing max_msg_size field to the mca_ofi_module_t
structure and adds a length check to the low-level send routines.
(cherry-picked from commit 3aca4af548)
Change-Id: Ie50445e5edfb0f30916de0836db0edc64ecf7c60
Signed-off-by: Michael Heinz <michael.william.heinz@intel.com>
Reviewed-by: Adam Goldman <adam.goldman@intel.com>
Reviewed-by: Brendan Cunningham <brendan.cunningham@intel.com>
open-mpi/ompi@0fe756d416 Introduced
a bug in coll/hcoll component. The ompi_requests allocated by
libhcoll would be treated as coll_base_nbc_request during
ompi_coll_base_retain_<> call. Afterwards this would lead to a
segv in the request cleanup.
Fix: since libhcoll interface does not distinguish between the
blocling/non-blocking requests use coll_base_nbc_request all the
time and initialize it properly in
coll/hcoll/get_coll_handle(). It is still within 2 cache lines.
Signed-off-by: Valentin Petrov <valentinp@mellanox.com>
Update PMIx to latest master to get supporting updates. For
connect/accept (part of comm_spawn as well), lookup locality for all
participating procs on the node and compute the relative locality so it
can be used for MPI operations.
Signed-off-by: Ralph Castain <rhc@pmix.org>
(cherry picked from commit d202e10c14)
To avoid fully initializing the osc/ucx component for MPI application
that are not using One-Sided functionality, the initialization happens
at the first MPI window creation.
This commit ensures atomicity of global state modifications.
ported from: 6678ac0f55
Signed-off-by: Artem Polyakov <artpol84@gmail.com>
fix alignment, and fix error path
a non blocking collective might return ompi_request_null, so we should not
retain anything in that case.
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
(cherry picked from commit open-mpi/ompi@63d3ccde9d)
Since ompi_coll_base_nbc_request_t is to be used in an
opal_free_list_t, it must be returned into a "clean" state.
So cleanup some data in the callback completion subroutines.
This fixes a regression introduced in open-mpi/ompi@0fe756d416
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
(cherry picked from commit open-mpi/ompi@0862c409f1)
base ompi_coll_libnbc_request_t on top of ompi_coll_base_nbc_request_t
to correctly support the retention of datatypes/operators
This fixes a regression introduced in open-mpi/ompi@0fe756d416
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
(cherry picked from commit open-mpi/ompi@f8eef0fde9)
Move toward a base type of vector (count, type, blocklen, extent, disp)
with disp and extent applying toward the count repertition and blocklen
being a contiguous memory of type type.
Implement 2 optimizations on this description used during type_commit:
- collapse: successive similar datatype descriptions are collapsed
together with an increased count.
- fusion: fuse successive datatype descriptions in order to minimize the
number of resulting memcpy during pack/unpack.
Fixes at the OMPI datatype level including:
- Fix the create_hindexed and vector creation.
- Fix the handling of [get|set]_elements and _count.
- Correctly compute the dispacement for block indexed types.
- Support the MPI_LB and MPI_UB deprecation, aka. OMPI_ENABLE_MPI1_COMPAT.
Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
Use linear with sync alltoall algorithm for certain message/comm size
ranges. Does not affect default fixed decision, unless HPCX (with its
custom parameters) is used or corresponding mca is set.
Signed-off-by: Mikhail Brinskii <mikhailb@mellanox.com>
(cherry picked from commit 404c480068)
These issues were introduced in the recent commit b71af0eca0.
This commit fixes Coverity CID 1451661 and 1451660.
Though `c_info` part was an actual bug, the `c_sendtypes` part was not.
Signed-off-by: KAWASHIMA Takahiro <t-kawashima@jp.fujitsu.com>
(cherry picked from commit open-mpi/ompi@facf8c5e98)
- ignore sendcounts, sendispls and sendtypes arguments when MPI_IN_PLACE is used
- use the right size when an inter-communicator is used.
Thanks Markus Geimer for reporting this.
Refs. open-mpi/ompi#5459
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
(cherry picked from commit open-mpi/ompi@cdaed89d04)
MPI standard states a user MPI_Op and/or user MPI_Datatype can be free'd
after a call to a non blocking collective and before the non-blocking
collective completes.
Retain user (only) MPI_Op and MPI_Datatype when the non blocking call is
invoked, and set a request callback so they are free'd when the MPI_Request
completes.
Thanks Thomas Ponweiser for reporting this
Fixesopen-mpi/ompi#2151Fixesopen-mpi/ompi#1304
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
(cherry picked from commit open-mpi/ompi@0fe756d416)
Signed-off-by: Aurelien Bouteiller <bouteill@icl.utk.edu>
Correctly bubble up errors in NBC collective operations
Signed-off-by: Aurelien Bouteiller <bouteill@icl.utk.edu>
The error field of requests needs to be rearmed at start, not at create
Signed-off-by: Aurelien Bouteiller <bouteill@icl.utk.edu>
(cherry picked from commit open-mpi/ompi@65660e5999)
In common_ompi_aggregators calc_cost routine:
do not cast the real division to an int intermediately.
This patch removes the obsolete int variable c and assigns
the result of the P_a/P_x division directly to n_as.
With the intermediate int c variable, n_as gets 0 if P_a < P_x,
resulting in a division by 0 when computing n_s.
Signed-off-by: Harald Klimach <harald.klimach@uni-siegen.de>
(cherry picked from commit e222a04ae5)
The procedure names don't contain "_f08" of Fortran 2008 bindings of
Persistent Collective Operations(mpiext/pcollreq/use-mpi-f08).
This fix adds "_f08" to the procedure names of pcollreq/use-mpi-f08,
same as other Fortran 2008 routines in `ompi/mpi/fortran/use-mpi-f08/mod`.
Signed-off-by: Tsubasa Yanagibashi <fj2505dt@aa.jp.fujitsu.com>
(cherry picked from commit 3148b0cfaa)
Use the PVAR ctx to save the SPC index, so that no lookup nor
restriction on the SPC vars position is imposed.
Make sure the PVAR are always registered.
Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
When using an empty fileview, a division by zero bug can occur in ompio. Not entirely sure why the problem did not show up previously, but some recent changes trigger that bug in one of our tests.
This pr is part of a fix applied in commit f6b3a0a
Fixes Issue #6703
Signed-off-by: Edgar Gabriel <egabriel@central.uh.edu>
If user sets HCOLL_EXTERNAL_UCM_EVENTS=1 then we try init opal
memory framework and register a mem release cb. Otherwise, rely on ucx.
Signed-off-by: Valentin Petrov <valentinp@mellanox.com>
- in case if multithreading requested but not supported
disable PML UCX
Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
(cherry picked from commit a3578d9ece)
Atomic lock must progress local worker while obtaining the remote lock,
otherwise an active message which actually releases the lock might not
be processed while polling on local memory location.
(picked from master 9d1994b)
Signed-off-by: Yossi Itigin <yosefe@mellanox.com>
The rdma_frag attached to the send request was not correctly released
upon request completion, leaking until MPI_Finalize. A quick solution
would have been to add RDMA_FRAG_RETURN at different locations on the
send request completion, but it would have unnecessarily made the
sendreq completion path more complex. Instead, I added the length to
the RDMA fragment so that it can be completed during the remote ack.
Be more explicit on the comment.
The rdma_frag can only be freed once when the peer forced a protocol
change (from RDMA GET to send/recv). Otherwise the fragment will be
returned once all data pertaining to it has been trasnferred.
NOTE: Had to add a typedef for "opal_atomic_size_t" from master into
opal/threads/thread_usage.h into this cherry pick (it is in
opal/include/opal_stdatomic.h on master, but that file does not exist
here on the v4.0.x branch).
Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
(cherry picked from commit a16cf0e4dd)
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
In case of using a btl_put in ob1, the handle of the locally registered
memory is sent with a PUT control message. In the current master code
the sent handle is necessary the handle in the frag but if the handle
has been successfully registered in the request, the frag structure does
not have any valid handle and all fragments use the request one.
I suggest to check if the handle in the fragment is valid and if not to
send the handle from the request.
Signed-off-by: Brelle Emmanuel <emmanuel.brelle@atos.net>
(cherry picked from commit e630046a4b)
The new routine transfers the data asynchronously from the source PE to all
PEs in the OpenSHMEM job. The routine returns immediately. The source and
target buffers are reusable only after the completion of the routine.
After the data is transferred to the target buffers, the counter object
is updated atomically. The counter object can be read either using atomic
operations such as shmem_atomic_fetch or can use point-to-point synchronization
routines such as shmem_wait_until and shmem_test.
Signed-off-by: Mikhail Brinskii <mikhailb@mellanox.com>
(cherry picked from commit 2ef5bd8b36)
unless configure'd with --enable-mpi1-compatibility
This is a one-off commit for the v4.0.x branch since these symbols were
simply removed from master.
Thanks Lisandro Dalcin for reporting this.
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
There are a couple MPI_Alltoallv calls in ad_gpfs_aggrs.c where the
send/recv data comes from places like req[r].lens, and the send
buffer and send displacements for example were being calculated as
sbuf = pick one of the reqs: req[bottom].lens
sdisps[r] = req[r].lens - req[bottom].lens
which might be okay if the .lens was data inside of req[] so they'd
all be close to each other. But each .lens field is just a pointer
that's malloced, so those addresses can be all over the place, so the
integer-sized sdisps[] isn't safe.
I changed it to have a new extra array sbuf and rbuf for those two
Alltoallv calls, and copied the data into the sbuf from the same
locations it used to be setting up the sdisps[] at, and after the
Alltoallv I copy the data out of the new rbuf into the same
locations it used to be setting up the rdisps[] at.
For what it's worth I was able to get this to fail -np 2 on a GPFS
filesystem with hints romio_cb_write enable. I didn't whittle the
test down to something small, but it was failing in an
MPI_File_write_all call.
Signed-off-by: Mark Allen <markalle@us.ibm.com>
(cherry picked from commit d85cac8f1a)
In the case the btl_get fails Ob1 tries to fallback on btl_put first but
the return code was ignored. So the code fell back on both btl_put and
btl_send.
Signed-off-by: Brelle Emmanuel <emmanuel.brelle@atos.net>
(cherry picked from commit 9c689f2225)
