Modify singularity support per patch from Greg Kurtzer

orte/mca/schizo/singularity/schizo_singularity.c

@@ -31,12 +31,9 @@
 
 static int setup_app(char **personality,
                      orte_app_context_t *context);
-static int setup_fork(orte_job_t *jdata,
-                      orte_app_context_t *context);
 
 orte_schizo_base_module_t orte_schizo_singularity_module = {
-    .setup_app = setup_app,
+    .setup_app = setup_app
-    .setup_fork = setup_fork
 };
 
 static int setup_app(char **personality,
@@ -45,7 +42,7 @@ static int setup_app(char **personality,
     int i;
     char *newenv, *pth;
     bool takeus = false;
-    char *p, *t2;
+    char *t2;
 
     /* see if we are included */
     for (i=0; NULL != personality[i]; i++) {
@@ -94,79 +91,9 @@ static int setup_app(char **personality,
         }
     }
 
-    /* ensure that we use "singularity run" to execute this app */
-    if (0 != strcmp(app->app, "singularity")) {
-        opal_output_verbose(1, orte_schizo_base_framework.framework_output,
-                            "%s schizo:singularity: adding singularity cmd %s",
-                            ORTE_NAME_PRINT(ORTE_PROC_MY_NAME), pth);
-        /* change the app to the "singularity" command */
-        free(app->app);
-        app->app = pth;
-    } else {
-        free(pth);
-    }
-
-    /* if the app contains .sapp, then we need to strip that
-     * extension so singularity doesn't bark at us */
-    if (NULL != (p = strstr(app->argv[0], ".sapp"))) {
-        t2 = opal_basename(app->argv[0]);
-        p = strstr(t2, ".sapp");
-        *p = '\0'; // strip the extension
-        free(app->argv[0]);
-        app->argv[0] = t2;
-    }
-    opal_argv_prepend_nosize(&app->argv, "run");
-    opal_argv_prepend_nosize(&app->argv, "singularity");
-
     /* export an envar to permit shared memory operations */
     opal_setenv("SINGULARITY_NO_NAMESPACE_PID", "1", true, &app->env);
 
     return ORTE_SUCCESS;
 }
 
-static int setup_fork(orte_job_t *jdata,
-                      orte_app_context_t *app)
-{
-    int i;
-    bool takeus = false;
-    char *p;
-    char dir[MAXPATHLEN];
-
-    /* see if we are included */
-    for (i=0; NULL != jdata->personality[i]; i++) {
-        if (0 == strcmp(jdata->personality[i], "singularity")) {
-            takeus = true;
-            break;
-        }
-    }
-    if (!takeus) {
-        /* even if they didn't specify, check to see if
-         * this involves a singularity container */
-        if (0 != strcmp(app->argv[0],"singularity") &&
-            0 != strcmp(app->argv[0],"sapprun") &&
-            NULL == strstr(app->argv[0], ".sapp")) {
-            /* guess not! */
-            return ORTE_ERR_TAKE_NEXT_OPTION;
-        }
-    }
-
-    /* save our current directory */
-    getcwd(dir, sizeof(dir));
-
-    /* change to the working directory for this context */
-    chdir(app->cwd);
-
-    /* ensure the app is installed */
-    opal_output_verbose(1, orte_schizo_base_framework.framework_output,
-                        "%s schizo:singularity: installing app %s",
-                        ORTE_NAME_PRINT(ORTE_PROC_MY_NAME), app->argv[2]);
-    (void)asprintf(&p, "%s install %s.sapp &> /dev/null", app->app, app->argv[2]);
-    system(p);
-    free(p);
-
-    /* return to the original directory */
-    chdir(dir);
-
-    return ORTE_SUCCESS;
-}
-