* add missing Makefile to configure output

* Fix MPI profiling layer symlink code from src -> ompi
* Change some modex includes

This commit was SVN r6309.

configure.ac

@@ -1534,6 +1534,7 @@ AC_CONFIG_FILES([
     orte/dynamic-mca/soh/Makefile
 
     ompi/Makefile
+    ompi/include/Makefile
     ompi/class/Makefile
 
     ompi/attribute/Makefile

ompi/mpi/c/profile/Makefile.am

@@ -355,7 +355,7 @@ endif
 $(nodist_libmpi_c_pmpi_la_SOURCES):
 	if test ! -r $@ ; then \
 		pname=`echo $@ | cut -b '2-'` ; \
-		ln -s $(top_srcdir)/src/mpi/c/$$pname $@ ; \
+		ln -s $(top_srcdir)/ompi/mpi/c/$$pname $@ ; \
 	fi
 
 # Conditionally install the header files

ompi/mpi/f77/profile/Makefile.am

@@ -335,7 +335,7 @@ endif
 $(nodist_libmpi_f77_pmpi_la_SOURCES):
 	if test ! -r $@ ; then \
 	    pname=`echo $@ | cut -b '2-'` ; \
-	    ln -s $(top_srcdir)/src/mpi/f77/$$pname $@ ; \
+	    ln -s $(top_srcdir)/ompi/mpi/f77/$$pname $@ ; \
 	fi
 
 # Conditionally install the header files

ompi/mpi/runtime/ompi_mpi_finalize.c

@@ -37,7 +37,7 @@
 #include "attribute/attribute.h"
 
 #include "mca/base/base.h"
-#include "mca/base/mca_base_module_exchange.h"
+#include "mca/pml/base/pml_base_module_exchange.h"
 #include "mca/pml/pml.h"
 #include "mca/pml/base/base.h"
 #include "mca/coll/coll.h"

ompi/mpi/runtime/ompi_mpi_init.c

@@ -44,7 +44,7 @@
 #include "mca/mpool/base/base.h"
 #include "mca/mpool/mpool.h"
 #include "mca/pml/pml.h"
-#include "mca/pml/pml.h"
+#include "mca/pml/base/pml_base_module_exchange.h"
 #include "mca/pml/base/base.h"
 #include "mca/coll/coll.h"
 #include "mca/coll/base/base.h"