ports/openmpi
ports/openmpi
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romio: compile openmpi mpi-io glue

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Этот коммит содержится в:
Gilles Gouaillardet 2015-01-08 14:08:46 +09:00
родитель 4e592ac434
Коммит b746a8f584
2 изменённых файлов: 66 добавлений и 39 удалений
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1
ompi/mca/io/romio/romio/mpi-io/glue/Makefile.mk
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@ -7,6 +7,7 @@
include $(top_srcdir)/mpi-io/glue/default/Makefile.mk
include $(top_srcdir)/mpi-io/glue/mpich/Makefile.mk
include $(top_srcdir)/mpi-io/glue/openmpi/Makefile.mk
if !BUILD_ROMIO_EMBEDDED
romio_other_sources += \

104
ompi/mca/io/romio/romio/ompi.patch
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@ -1,6 +1,6 @@
diff -x ompi.patch -x confdb -ruN mpich/src/mpi/romio/adio/common/ad_end.c ompi/ompi/mca/io/romio/romio/adio/common/ad_end.c
diff -x ompi.patch -x confdb -x autom4te.cache -x version.m4 -x aclocal.m4 -ruN mpich/src/mpi/romio/adio/common/ad_end.c ompi/ompi/mca/io/romio/romio/adio/common/ad_end.c
--- mpich/src/mpi/romio/adio/common/ad_end.c 2014-12-25 16:45:58.224965512 +0900
+++ ompi/ompi/mca/io/romio/romio/adio/common/ad_end.c 2015-01-06 19:41:59.287738412 +0900
+++ ompi/ompi/mca/io/romio/romio/adio/common/ad_end.c 2015-01-06 19:43:31.734793345 +0900
@@ -16,7 +16,12 @@
/* if a default errhandler was set on MPI_FILE_NULL then we need to ensure
@ -14,9 +14,9 @@ diff -x ompi.patch -x confdb -ruN mpich/src/mpi/romio/adio/common/ad_end.c ompi/
/* delete the flattened datatype list */
curr = ADIOI_Flatlist;
diff -x ompi.patch -x confdb -ruN mpich/src/mpi/romio/adio/common/ad_iread_coll.c ompi/ompi/mca/io/romio/romio/adio/common/ad_iread_coll.c
diff -x ompi.patch -x confdb -x autom4te.cache -x version.m4 -x aclocal.m4 -ruN mpich/src/mpi/romio/adio/common/ad_iread_coll.c ompi/ompi/mca/io/romio/romio/adio/common/ad_iread_coll.c
--- mpich/src/mpi/romio/adio/common/ad_iread_coll.c 2014-12-25 16:45:58.225965642 +0900
+++ ompi/ompi/mca/io/romio/romio/adio/common/ad_iread_coll.c 2015-01-06 19:41:59.287738412 +0900
+++ ompi/ompi/mca/io/romio/romio/adio/common/ad_iread_coll.c 2015-01-07 11:01:28.116415010 +0900
@@ -15,6 +15,8 @@
#include "mpe.h"
#endif
@ -31,9 +31,9 @@ diff -x ompi.patch -x confdb -ruN mpich/src/mpi/romio/adio/common/ad_iread_coll.
}
+#endif /* HAVE_MPI_GREQUEST_EXTENSIONS */
diff -x ompi.patch -x confdb -ruN mpich/src/mpi/romio/adio/common/ad_iwrite_coll.c ompi/ompi/mca/io/romio/romio/adio/common/ad_iwrite_coll.c
diff -x ompi.patch -x confdb -x autom4te.cache -x version.m4 -x aclocal.m4 -ruN mpich/src/mpi/romio/adio/common/ad_iwrite_coll.c ompi/ompi/mca/io/romio/romio/adio/common/ad_iwrite_coll.c
--- mpich/src/mpi/romio/adio/common/ad_iwrite_coll.c 2014-12-25 16:45:58.225965642 +0900
+++ ompi/ompi/mca/io/romio/romio/adio/common/ad_iwrite_coll.c 2015-01-06 19:41:59.287738412 +0900
+++ ompi/ompi/mca/io/romio/romio/adio/common/ad_iwrite_coll.c 2015-01-07 11:01:28.179454706 +0900
@@ -12,6 +12,8 @@
#include "mpe.h"
#endif
@ -48,9 +48,9 @@ diff -x ompi.patch -x confdb -ruN mpich/src/mpi/romio/adio/common/ad_iwrite_coll
}
+#endif /* HAVE_MPI_GREQUEST_EXTENSIONS */
diff -x ompi.patch -x confdb -ruN mpich/src/mpi/romio/adio/include/adioi.h ompi/ompi/mca/io/romio/romio/adio/include/adioi.h
diff -x ompi.patch -x confdb -x autom4te.cache -x version.m4 -x aclocal.m4 -ruN mpich/src/mpi/romio/adio/include/adioi.h ompi/ompi/mca/io/romio/romio/adio/include/adioi.h
--- mpich/src/mpi/romio/adio/include/adioi.h 2014-12-25 16:45:58.228966032 +0900
+++ ompi/ompi/mca/io/romio/romio/adio/include/adioi.h 2015-01-06 19:41:59.291738936 +0900
+++ ompi/ompi/mca/io/romio/romio/adio/include/adioi.h 2015-01-07 11:01:28.353564349 +0900
@@ -429,18 +429,26 @@
MPI_Datatype datatype, int file_ptr_type,
ADIO_Offset offset, ADIO_Status *status, int
@ -78,9 +78,9 @@ diff -x ompi.patch -x confdb -ruN mpich/src/mpi/romio/adio/include/adioi.h ompi/
void ADIOI_Calc_my_off_len(ADIO_File fd, int bufcount, MPI_Datatype
datatype, int file_ptr_type, ADIO_Offset
offset, ADIO_Offset **offset_list_ptr, ADIO_Offset
diff -x ompi.patch -x confdb -ruN mpich/src/mpi/romio/adio/include/romioconf-undefs.h ompi/ompi/mca/io/romio/romio/adio/include/romioconf-undefs.h
diff -x ompi.patch -x confdb -x autom4te.cache -x version.m4 -x aclocal.m4 -ruN mpich/src/mpi/romio/adio/include/romioconf-undefs.h ompi/ompi/mca/io/romio/romio/adio/include/romioconf-undefs.h
--- mpich/src/mpi/romio/adio/include/romioconf-undefs.h 1970-01-01 09:00:00.000000000 +0900
+++ ompi/ompi/mca/io/romio/romio/adio/include/romioconf-undefs.h 2015-01-06 19:41:59.291738936 +0900
+++ ompi/ompi/mca/io/romio/romio/adio/include/romioconf-undefs.h 2015-01-07 11:01:28.438617911 +0900
@@ -0,0 +1,45 @@
+/*
+ * Copyright (c) 2004-2005 The Trustees of Indiana University and Indiana
@ -127,17 +127,32 @@ diff -x ompi.patch -x confdb -ruN mpich/src/mpi/romio/adio/include/romioconf-und
+#endif
+
+#endif /* ROMIOCONF_UNDEFS_H */
diff -x ompi.patch -x confdb -ruN mpich/src/mpi/romio/.config_params ompi/ompi/mca/io/romio/romio/.config_params
diff -x ompi.patch -x confdb -x autom4te.cache -x version.m4 -x aclocal.m4 -ruN mpich/src/mpi/romio/adio/Makefile.mk ompi/ompi/mca/io/romio/romio/adio/Makefile.mk
--- mpich/src/mpi/romio/adio/Makefile.mk 2014-12-25 16:45:58.214964210 +0900
+++ ompi/ompi/mca/io/romio/romio/adio/Makefile.mk 2015-01-07 14:46:19.504816749 +0900
@@ -19,7 +19,10 @@
adio/include/mpio_error.h \
adio/include/mpipr.h \
adio/include/mpiu_greq.h \
- adio/include/nopackage.h
+ adio/include/nopackage.h \
+ adio/include/romioconf-undefs.h \
+ adio/include/mpiu_external32.h \
+ adio/include/hint_fns.h
include $(top_srcdir)/adio/ad_gpfs/Makefile.mk
include $(top_srcdir)/adio/ad_gpfs/bg/Makefile.mk
diff -x ompi.patch -x confdb -x autom4te.cache -x version.m4 -x aclocal.m4 -ruN mpich/src/mpi/romio/.config_params ompi/ompi/mca/io/romio/romio/.config_params
--- mpich/src/mpi/romio/.config_params 2014-12-25 16:45:58.214964210 +0900
+++ ompi/ompi/mca/io/romio/romio/.config_params 2015-01-06 19:41:59.277737109 +0900
+++ ompi/ompi/mca/io/romio/romio/.config_params 2015-01-06 19:43:31.738793869 +0900
@@ -36,3 +36,4 @@
__hp_mpi
__cray_mpi
__lam_mpi
+__open_mpi
diff -x ompi.patch -x confdb -ruN mpich/src/mpi/romio/configure.ac ompi/ompi/mca/io/romio/romio/configure.ac
diff -x ompi.patch -x confdb -x autom4te.cache -x version.m4 -x aclocal.m4 -ruN mpich/src/mpi/romio/configure.ac ompi/ompi/mca/io/romio/romio/configure.ac
--- mpich/src/mpi/romio/configure.ac 2014-12-25 16:45:58.229966162 +0900
+++ ompi/ompi/mca/io/romio/romio/configure.ac 2015-01-06 19:41:59.293739196 +0900
+++ ompi/ompi/mca/io/romio/romio/configure.ac 2015-01-07 11:01:28.602721250 +0900
@@ -3,12 +3,21 @@
# autoconf --localdir=../confdb configure.ac
# (or wherever the confdb is)
@ -483,7 +498,7 @@ diff -x ompi.patch -x confdb -ruN mpich/src/mpi/romio/configure.ac ompi/ompi/mca
AC_OUTPUT
dnl PAC_SUBDIR_CACHE_CLEANUP
diff -x ompi.patch -x confdb -ruN mpich/src/mpi/romio/doc/Makefile ompi/ompi/mca/io/romio/romio/doc/Makefile
diff -x ompi.patch -x confdb -x autom4te.cache -x version.m4 -x aclocal.m4 -ruN mpich/src/mpi/romio/doc/Makefile ompi/ompi/mca/io/romio/romio/doc/Makefile
--- mpich/src/mpi/romio/doc/Makefile 2014-12-25 16:45:58.229966162 +0900
+++ ompi/ompi/mca/io/romio/romio/doc/Makefile 1970-01-01 09:00:00.000000000 +0900
@@ -1,11 +0,0 @@
@ -498,9 +513,9 @@ diff -x ompi.patch -x confdb -ruN mpich/src/mpi/romio/doc/Makefile ompi/ompi/mca
- -rm -f users-guide.toc users-guide.log users-guide.dvi \
- users-guide.aux users-guide.bbl users-guide.ps \
- users-guide.blg
diff -x ompi.patch -x confdb -ruN mpich/src/mpi/romio/doc/users-guide.tex ompi/ompi/mca/io/romio/romio/doc/users-guide.tex
diff -x ompi.patch -x confdb -x autom4te.cache -x version.m4 -x aclocal.m4 -ruN mpich/src/mpi/romio/doc/users-guide.tex ompi/ompi/mca/io/romio/romio/doc/users-guide.tex
--- mpich/src/mpi/romio/doc/users-guide.tex 2014-12-25 16:45:58.230966293 +0900
+++ ompi/ompi/mca/io/romio/romio/doc/users-guide.tex 2015-01-06 19:41:59.294739326 +0900
+++ ompi/ompi/mca/io/romio/romio/doc/users-guide.tex 2015-01-07 11:01:28.619731962 +0900
@@ -807,13 +807,19 @@
your MPI-IO program.
@ -532,9 +547,9 @@ diff -x ompi.patch -x confdb -ruN mpich/src/mpi/romio/doc/users-guide.tex ompi/o
\item The file-open mode {\tt MPI\_MODE\_EXCL} does not work on Intel
PFS file system, due to a bug in PFS.
diff -x ompi.patch -x confdb -ruN mpich/src/mpi/romio/.gitignore ompi/ompi/mca/io/romio/romio/.gitignore
diff -x ompi.patch -x confdb -x autom4te.cache -x version.m4 -x aclocal.m4 -ruN mpich/src/mpi/romio/.gitignore ompi/ompi/mca/io/romio/romio/.gitignore
--- mpich/src/mpi/romio/.gitignore 1970-01-01 09:00:00.000000000 +0900
+++ ompi/ompi/mca/io/romio/romio/.gitignore 2015-01-06 19:41:59.277737109 +0900
+++ ompi/ompi/mca/io/romio/romio/.gitignore 2015-01-07 11:01:26.982701076 +0900
@@ -0,0 +1,13 @@
+/Makefile
+/.deps
@ -549,9 +564,9 @@ diff -x ompi.patch -x confdb -ruN mpich/src/mpi/romio/.gitignore ompi/ompi/mca/i
+.state-cache
+version.m4
+confdb/config.rpath
diff -x ompi.patch -x confdb -ruN mpich/src/mpi/romio/include/io_romio_conv.h ompi/ompi/mca/io/romio/romio/include/io_romio_conv.h
diff -x ompi.patch -x confdb -x autom4te.cache -x version.m4 -x aclocal.m4 -ruN mpich/src/mpi/romio/include/io_romio_conv.h ompi/ompi/mca/io/romio/romio/include/io_romio_conv.h
--- mpich/src/mpi/romio/include/io_romio_conv.h 1970-01-01 09:00:00.000000000 +0900
+++ ompi/ompi/mca/io/romio/romio/include/io_romio_conv.h 2015-01-06 19:41:59.294739326 +0900
+++ ompi/ompi/mca/io/romio/romio/include/io_romio_conv.h 2015-01-07 11:01:28.638743935 +0900
@@ -0,0 +1,124 @@
+/*
+ * Copyright (c) 2004-2005 The Trustees of Indiana University and Indiana
@ -677,9 +692,9 @@ diff -x ompi.patch -x confdb -ruN mpich/src/mpi/romio/include/io_romio_conv.h om
+#endif
+
+#endif /* MCA_IO_ROMIO_CONV_H */
diff -x ompi.patch -x confdb -ruN mpich/src/mpi/romio/include/mpio.h.in ompi/ompi/mca/io/romio/romio/include/mpio.h.in
diff -x ompi.patch -x confdb -x autom4te.cache -x version.m4 -x aclocal.m4 -ruN mpich/src/mpi/romio/include/mpio.h.in ompi/ompi/mca/io/romio/romio/include/mpio.h.in
--- mpich/src/mpi/romio/include/mpio.h.in 2014-12-25 16:45:58.230966293 +0900
+++ ompi/ompi/mca/io/romio/romio/include/mpio.h.in 2015-01-06 19:41:59.294739326 +0900
+++ ompi/ompi/mca/io/romio/romio/include/mpio.h.in 2015-01-07 11:01:28.655754646 +0900
@@ -11,6 +11,16 @@
#define MPIO_INCLUDE
@ -742,9 +757,9 @@ diff -x ompi.patch -x confdb -ruN mpich/src/mpi/romio/include/mpio.h.in ompi/omp
#if defined(__cplusplus)
}
#endif
diff -x ompi.patch -x confdb -ruN mpich/src/mpi/romio/localdefs.in ompi/ompi/mca/io/romio/romio/localdefs.in
diff -x ompi.patch -x confdb -x autom4te.cache -x version.m4 -x aclocal.m4 -ruN mpich/src/mpi/romio/localdefs.in ompi/ompi/mca/io/romio/romio/localdefs.in
--- mpich/src/mpi/romio/localdefs.in 2014-12-25 16:45:58.230966293 +0900
+++ ompi/ompi/mca/io/romio/romio/localdefs.in 2015-01-06 19:41:59.294739326 +0900
+++ ompi/ompi/mca/io/romio/romio/localdefs.in 2015-01-06 19:43:31.743794524 +0900
@@ -1,7 +1,4 @@
#! /bin/sh
-
@ -754,9 +769,9 @@ diff -x ompi.patch -x confdb -ruN mpich/src/mpi/romio/localdefs.in ompi/ompi/mca
+LIBS="@LIBS@"
MPI_OFFSET_TYPE="@MPI_OFFSET_TYPE@"
FORTRAN_MPI_OFFSET="@FORTRAN_MPI_OFFSET@"
diff -x ompi.patch -x confdb -ruN mpich/src/mpi/romio/Makefile.am ompi/ompi/mca/io/romio/romio/Makefile.am
diff -x ompi.patch -x confdb -x autom4te.cache -x version.m4 -x aclocal.m4 -ruN mpich/src/mpi/romio/Makefile.am ompi/ompi/mca/io/romio/romio/Makefile.am
--- mpich/src/mpi/romio/Makefile.am 2014-12-25 16:45:58.214964210 +0900
+++ ompi/ompi/mca/io/romio/romio/Makefile.am 2015-01-06 19:41:59.277737109 +0900
+++ ompi/ompi/mca/io/romio/romio/Makefile.am 2015-01-07 11:01:27.001713046 +0900
@@ -1,9 +1,28 @@
# -*- Mode: Makefile; -*-
+# Copyright (c) 2004-2006 The Trustees of Indiana University and Indiana
@ -816,9 +831,9 @@ diff -x ompi.patch -x confdb -ruN mpich/src/mpi/romio/Makefile.am ompi/ompi/mca/
## NOTE: ROMIO's old build system builds a bunch of _foo.o objects that contain
## PMPI_ implementations as well as calls to only other PMPI routines. In
diff -x ompi.patch -x confdb -ruN mpich/src/mpi/romio/Makefile.options ompi/ompi/mca/io/romio/romio/Makefile.options
diff -x ompi.patch -x confdb -x autom4te.cache -x version.m4 -x aclocal.m4 -ruN mpich/src/mpi/romio/Makefile.options ompi/ompi/mca/io/romio/romio/Makefile.options
--- mpich/src/mpi/romio/Makefile.options 1970-01-01 09:00:00.000000000 +0900
+++ ompi/ompi/mca/io/romio/romio/Makefile.options 2015-01-06 19:41:59.277737109 +0900
+++ ompi/ompi/mca/io/romio/romio/Makefile.options 2015-01-07 11:01:27.015721870 +0900
@@ -0,0 +1,36 @@
+# -*- makefile -*-
+#
@ -856,9 +871,9 @@ diff -x ompi.patch -x confdb -ruN mpich/src/mpi/romio/Makefile.options ompi/ompi
+ -I$(OMPI_TOP_BUILDDIR)/ompi/include \
+ -I$(top_srcdir)/include \
+ -I$(top_srcdir)/adio/include
diff -x ompi.patch -x confdb -ruN mpich/src/mpi/romio/mpi-io/close.c ompi/ompi/mca/io/romio/romio/mpi-io/close.c
diff -x ompi.patch -x confdb -x autom4te.cache -x version.m4 -x aclocal.m4 -ruN mpich/src/mpi/romio/mpi-io/close.c ompi/ompi/mca/io/romio/romio/mpi-io/close.c
--- mpich/src/mpi/romio/mpi-io/close.c 2014-12-25 16:45:58.230966293 +0900
+++ ompi/ompi/mca/io/romio/romio/mpi-io/close.c 2015-01-06 19:41:59.294739326 +0900
+++ ompi/ompi/mca/io/romio/romio/mpi-io/close.c 2015-01-07 11:01:28.670764098 +0900
@@ -76,8 +76,13 @@
* somehow inform the MPI library that we no longer hold a reference to any
* user defined error handler. We do this by setting the errhandler at this
@ -873,9 +888,20 @@ diff -x ompi.patch -x confdb -ruN mpich/src/mpi/romio/mpi-io/close.c ompi/ompi/m
ADIO_Close(adio_fh, &error_code);
MPIO_File_free(fh);
diff -x ompi.patch -x confdb -ruN mpich/src/mpi/romio/mpi-io/iread_all.c ompi/ompi/mca/io/romio/romio/mpi-io/iread_all.c
diff -x ompi.patch -x confdb -x autom4te.cache -x version.m4 -x aclocal.m4 -ruN mpich/src/mpi/romio/mpi-io/glue/Makefile.mk ompi/ompi/mca/io/romio/romio/mpi-io/glue/Makefile.mk
--- mpich/src/mpi/romio/mpi-io/glue/Makefile.mk 2014-12-25 16:45:58.232966555 +0900
+++ ompi/ompi/mca/io/romio/romio/mpi-io/glue/Makefile.mk 2015-01-08 14:02:47.060155366 +0900
@@ -7,6 +7,7 @@
include $(top_srcdir)/mpi-io/glue/default/Makefile.mk
include $(top_srcdir)/mpi-io/glue/mpich/Makefile.mk
+include $(top_srcdir)/mpi-io/glue/openmpi/Makefile.mk
if !BUILD_ROMIO_EMBEDDED
romio_other_sources += \
diff -x ompi.patch -x confdb -x autom4te.cache -x version.m4 -x aclocal.m4 -ruN mpich/src/mpi/romio/mpi-io/iread_all.c ompi/ompi/mca/io/romio/romio/mpi-io/iread_all.c
--- mpich/src/mpi/romio/mpi-io/iread_all.c 2014-12-25 16:45:58.233966685 +0900
+++ ompi/ompi/mca/io/romio/romio/mpi-io/iread_all.c 2015-01-06 19:41:59.298739847 +0900
+++ ompi/ompi/mca/io/romio/romio/mpi-io/iread_all.c 2015-01-07 11:01:28.885899578 +0900
@@ -26,7 +26,7 @@
#include "mpioprof.h"
#endif
@ -885,9 +911,9 @@ diff -x ompi.patch -x confdb -ruN mpich/src/mpi/romio/mpi-io/iread_all.c ompi/om
#include "mpiu_greq.h"
#endif
diff -x ompi.patch -x confdb -ruN mpich/src/mpi/romio/mpi-io/Makefile.mk ompi/ompi/mca/io/romio/romio/mpi-io/Makefile.mk
diff -x ompi.patch -x confdb -x autom4te.cache -x version.m4 -x aclocal.m4 -ruN mpich/src/mpi/romio/mpi-io/Makefile.mk ompi/ompi/mca/io/romio/romio/mpi-io/Makefile.mk
--- mpich/src/mpi/romio/mpi-io/Makefile.mk 2014-12-25 16:45:58.230966293 +0900
+++ ompi/ompi/mca/io/romio/romio/mpi-io/Makefile.mk 2015-01-06 19:41:59.294739326 +0900
+++ ompi/ompi/mca/io/romio/romio/mpi-io/Makefile.mk 2015-01-07 11:01:28.669763468 +0900
@@ -14,8 +14,6 @@
romio_mpi_sources += \
mpi-io/close.c \
@ -897,9 +923,9 @@ diff -x ompi.patch -x confdb -ruN mpich/src/mpi/romio/mpi-io/Makefile.mk ompi/om
mpi-io/fsync.c \
mpi-io/get_amode.c \
mpi-io/get_atom.c \
diff -x ompi.patch -x confdb -ruN mpich/src/mpi/romio/mpi-io/mpioprof.h ompi/ompi/mca/io/romio/romio/mpi-io/mpioprof.h
diff -x ompi.patch -x confdb -x autom4te.cache -x version.m4 -x aclocal.m4 -ruN mpich/src/mpi/romio/mpi-io/mpioprof.h ompi/ompi/mca/io/romio/romio/mpi-io/mpioprof.h
--- mpich/src/mpi/romio/mpi-io/mpioprof.h 2014-12-25 16:45:58.233966685 +0900
+++ ompi/ompi/mca/io/romio/romio/mpi-io/mpioprof.h 2015-01-06 19:41:59.298739847 +0900
+++ ompi/ompi/mca/io/romio/romio/mpi-io/mpioprof.h 2015-01-07 11:01:29.005975192 +0900
@@ -10,6 +10,15 @@
building the profiling interface
*/
@ -921,9 +947,9 @@ diff -x ompi.patch -x confdb -ruN mpich/src/mpi/romio/mpi-io/mpioprof.h ompi/omp
#endif
+#endif
diff -x ompi.patch -x confdb -ruN mpich/src/mpi/romio/README_OMPI ompi/ompi/mca/io/romio/romio/README_OMPI
diff -x ompi.patch -x confdb -x autom4te.cache -x version.m4 -x aclocal.m4 -ruN mpich/src/mpi/romio/README_OMPI ompi/ompi/mca/io/romio/romio/README_OMPI
--- mpich/src/mpi/romio/README_OMPI 1970-01-01 09:00:00.000000000 +0900
+++ ompi/ompi/mca/io/romio/romio/README_OMPI 2015-01-06 19:41:59.277737109 +0900
+++ ompi/ompi/mca/io/romio/romio/README_OMPI 2015-01-07 11:01:27.034733843 +0900
@@ -0,0 +1,11 @@
+Please note that this is *NOT* a vanilla MPICH v3.2a2-84-gef1cf14
+distribution of the ROMIO package from Argonne National Labs.