orte/tools: fix misc memory leaks

as reported by Coverity with CIDs 70700, 71039, 71854, 72384 and 710651

orte/tools/orte-clean/orte-clean.c

@@ -13,6 +13,8 @@
  * Copyright (c) 2007-2013 Los Alamos National Security, LLC.  All rights
  *                         reserved. 
  * Copyright (c) 2011-2013 Cisco Systems, Inc.  All rights reserved.
+ * Copyright (c) 2015      Research Organization for Information Science
+ *                         and Technology (RIST). All rights reserved.
  * $COPYRIGHT$
  * 
  * Additional copyrights may follow
@@ -351,6 +353,7 @@ void kill_procs(void) {
      */
     if (NULL == (inputline = orte_getline(psfile))) {
         free(this_user);
+        fclose(psfile);
         return;
     } 
     free(inputline);  /* dump the header line */
@@ -441,5 +444,6 @@ void kill_procs(void) {
 	free(procname);
     }
     free(this_user);
+    fclose(psfile);
     return;
 }

orte/tools/orte-submit/orte-submit.c

@@ -1094,7 +1094,7 @@ static int create_app(int argc, char* argv[],
                 }
                 free(value);
             } else if (NULL != myglobals.prefix) {
-                param = myglobals.prefix;
+                param = strdup(myglobals.prefix);
             } else if (opal_cmd_line_is_taken(&cmd_line, "prefix")){
                 /* must be --prefix alone */
                 param = strdup(opal_cmd_line_get_param(&cmd_line, "prefix", 0, 0));
@@ -1112,6 +1112,7 @@ static int create_app(int argc, char* argv[],
                     if (0 == param_len) {
                         orte_show_help("help-orterun.txt", "orterun:empty-prefix",
                                        true, myglobals.basename, myglobals.basename);
+                        free(param);
                         return ORTE_ERR_FATAL;
                     }
                 }
@@ -1489,6 +1490,8 @@ static int parse_appfile(orte_job_t *jdata, char *filename, char ***env)
             if (NULL != *env) {
                 tmp_env = opal_argv_copy(*env);
                 if (NULL == tmp_env) {
+                    fclose(fp);
+                    opal_argv_free(argv);
                     return ORTE_ERR_OUT_OF_RESOURCE;
                 }
             } else {
@@ -1504,6 +1507,7 @@ static int parse_appfile(orte_job_t *jdata, char *filename, char ***env)
             if (NULL != tmp_env) {
                 opal_argv_free(tmp_env);
             }
+            opal_argv_free(argv);
             if (made_app) {
                 app->idx = app_num;
                 ++app_num;
@@ -1517,6 +1521,7 @@ static int parse_appfile(orte_job_t *jdata, char *filename, char ***env)
     /* All done */
 
     free(filename);
+    
     return ORTE_SUCCESS;
 }
 

orte/tools/orterun/orterun.c

@@ -15,6 +15,8 @@
  * Copyright (c) 2007-2013 Los Alamos National Security, LLC.  All rights
  *                         reserved. 
  * Copyright (c) 2013-2015 Intel, Inc. All rights reserved.
+ * Copyright (c) 2015      Research Organization for Information Science
+ *                         and Technology (RIST). All rights reserved.
  * $COPYRIGHT$
  *
  * Additional copyrights may follow
@@ -758,7 +760,7 @@ int orterun(int argc, char *argv[])
             }
             free(tmp_basename);
         } else if (NULL != orterun_globals.path_to_mpirun) {
-            param = orterun_globals.path_to_mpirun;
+            param = strdup(orterun_globals.path_to_mpirun);
         } else if (opal_cmd_line_is_taken(&cmd_line, "prefix")){
             /* must be --prefix alone */
             param = strdup(opal_cmd_line_get_param(&cmd_line, "prefix", 0, 0));
@@ -776,12 +778,12 @@ int orterun(int argc, char *argv[])
                 if (0 == param_len) {
                     orte_show_help("help-orterun.txt", "orterun:empty-prefix",
                                    true, orte_basename, orte_basename);
+                    free(param);
                     return ORTE_ERR_FATAL;
                 }
             }
 
-            orterun_globals.prefix = strdup(param);
-            free(param);
+            orterun_globals.prefix = param;
         }
         want_prefix_by_default = true;
     }