ROMIO 3.2.1 refresh: patch mpich romio for OMPI
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
Этот коммит содержится в:
Gilles Gouaillardet
родитель
2f391a99a7
Коммит
2f0db1945c
@ -36,3 +36,4 @@ __sgi_mpi
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__hp_mpi
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__cray_mpi
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__lam_mpi
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__open_mpi
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13
ompi/mca/io/romio321/romio/.gitignore
поставляемый
Обычный файл
13
ompi/mca/io/romio321/romio/.gitignore
поставляемый
Обычный файл
@ -0,0 +1,13 @@
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/Makefile
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/.deps
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/*.bb
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/*.bbg
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/*.gcda
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/*.gcno
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/.libs
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/.libstamp*
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/*.lo
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/.*-cache
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.state-cache
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version.m4
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confdb/config.rpath
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@ -1,9 +1,28 @@
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# -*- Mode: Makefile; -*-
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# Copyright (c) 2004-2006 The Trustees of Indiana University and Indiana
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# University Research and Technology
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# Corporation. All rights reserved.
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# Copyright (c) 2004-2005 The University of Tennessee and The University
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# of Tennessee Research Foundation. All rights
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# reserved.
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# Copyright (c) 2004-2005 High Performance Computing Center Stuttgart,
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# University of Stuttgart. All rights reserved.
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# Copyright (c) 2004-2005 The Regents of the University of California.
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# All rights reserved.
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# Copyright (c) 2008 Cisco Systems, Inc. All rights reserved.
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# $COPYRIGHT$
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#
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# Additional copyrights may follow
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#
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# $HEADER$
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#
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# (C) 2011 by Argonne National Laboratory.
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# See COPYRIGHT in top-level directory.
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#
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# OMPI: include a top level makefile with some options
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include $(top_srcdir)/Makefile.options
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## TODO: need to write an automakefile that handles two primary cases:
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## 1) that ROMIO is being embedded within the MPI library, as in MPICH or Open
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## MPI
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@ -17,7 +36,6 @@ ACLOCAL_AMFLAGS = -I confdb
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include_HEADERS =
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nodist_include_HEADERS =
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noinst_HEADERS =
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AM_CPPFLAGS =
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EXTRA_DIST =
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SUFFIXES =
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doc1_src_txt =
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@ -46,7 +64,9 @@ AM_CPPFLAGS += $(MPI_H_INCLUDE)
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# handle the "include" directory here
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AM_CPPFLAGS += -I$(top_builddir)/include -I$(top_srcdir)/include
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# nodist_ b/c these are created by config.status and should not be distributed
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nodist_include_HEADERS += include/mpio.h include/mpiof.h
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# Open MPI: do not install mpio.h
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noinst_HEADERS += include/mpio.h
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noinst_HEADERS += include/io_romio_conv.h
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# ------------------------------------------------------------------------
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@ -63,8 +83,8 @@ EXTRA_DIST += autogen.sh
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if BUILD_ROMIO_EMBEDDED
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# Build a libtool convenience library that the enclosing MPI implementation can
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# use by adding it to the right _LIBADD variable.
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noinst_LTLIBRARIES = libromio.la
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libromio_la_SOURCES = $(romio_mpi_sources) $(romio_other_sources) $(glue_sources)
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noinst_LTLIBRARIES = libromio_dist.la
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libromio_dist_la_SOURCES = $(romio_mpi_sources) $(romio_other_sources) $(glue_sources)
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## NOTE: ROMIO's old build system builds a bunch of _foo.o objects that contain
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## PMPI_ implementations as well as calls to only other PMPI routines. In
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36
ompi/mca/io/romio321/romio/Makefile.options
Обычный файл
36
ompi/mca/io/romio321/romio/Makefile.options
Обычный файл
@ -0,0 +1,36 @@
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# -*- makefile -*-
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#
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# Copyright (c) 2004-2005 The Trustees of Indiana University and Indiana
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# University Research and Technology
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# Corporation. All rights reserved.
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# Copyright (c) 2004-2005 The University of Tennessee and The University
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# of Tennessee Research Foundation. All rights
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# reserved.
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# Copyright (c) 2004-2005 High Performance Computing Center Stuttgart,
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# University of Stuttgart. All rights reserved.
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# Copyright (c) 2004-2005 The Regents of the University of California.
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# All rights reserved.
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# $COPYRIGHT$
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#
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# Additional copyrights may follow
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#
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# $HEADER$
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#
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AUTOMAKE_OPTIONS = foreign dist-bzip2
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# $(OMPI_TOP_SRCDIR) - mca_base_param.h
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# $(OMPI_TOP_SRCDIR)/opal/include - opal_config_bottom.h
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# $(OMPI_TOP_BUILDDIR)/opal/include - opal_config.h
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# $(OMPI_TOP_BUILDDIR)/ompi/include - mpi.h
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# $(top_srcdir)/include - vpath support
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# $(top_srcdir)/adio/include - vpath support
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AM_CPPFLAGS = \
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-DOMPI_BUILDING=1 \
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-I$(OMPI_TOP_SRCDIR) \
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-I$(OMPI_TOP_SRCDIR)/opal/include \
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-I$(OMPI_TOP_BUILDDIR)/opal/include \
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-I$(OMPI_TOP_BUILDDIR)/ompi/include \
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-I$(top_srcdir)/include \
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-I$(top_srcdir)/adio/include
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11
ompi/mca/io/romio321/romio/README_OMPI
Обычный файл
11
ompi/mca/io/romio321/romio/README_OMPI
Обычный файл
@ -0,0 +1,11 @@
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Please note that this is *NOT* a vanilla MPICH v3.2b1
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distribution of the ROMIO package from Argonne National Labs.
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Various customizations had to be applied to the configuration process.
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More to the point -- if replace this copy of ROMIO with a newer version,
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it will likely not work. :-(
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- The Open MPI Team
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-----------------------------------------------------------------------------
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Local modifications are in ompi.patch
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@ -20,6 +20,7 @@ noinst_HEADERS += \
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adio/include/mpipr.h \
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adio/include/mpiu_greq.h \
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adio/include/nopackage.h \
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adio/include/romioconf-undefs.h \
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adio/include/mpiu_external32.h \
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adio/include/hint_fns.h
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@ -16,7 +16,12 @@ void ADIO_End(int *error_code)
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/* if a default errhandler was set on MPI_FILE_NULL then we need to ensure
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* that our reference to that errhandler is released */
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/* Open MPI: The call to PMPI_File_set_errhandler has to be done in romio/src/io_romio_file_open.c
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in routine mca_io_romio_file_close()
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*/
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#if 0
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PMPI_File_set_errhandler(MPI_FILE_NULL, MPI_ERRORS_RETURN);
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#endif
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/* delete the flattened datatype list */
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curr = ADIOI_Flatlist;
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@ -16,6 +16,8 @@
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#include "mpe.h"
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#endif
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#ifdef HAVE_MPI_GREQUEST_EXTENSIONS
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/* ADIOI_GEN_IreadStridedColl */
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struct ADIOI_GEN_IreadStridedColl_vars {
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/* requests */
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@ -1340,3 +1342,4 @@ static int ADIOI_GEN_irc_wait_fn(int count, void **array_of_states,
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return errcode;
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}
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#endif /* HAVE_MPI_GREQUEST_EXTENSIONS */
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@ -13,6 +13,8 @@
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#include "mpe.h"
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#endif
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#ifdef HAVE_MPI_GREQUEST_EXTENSIONS
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/* ADIOI_GEN_IwriteStridedColl */
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struct ADIOI_GEN_IwriteStridedColl_vars {
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/* requests */
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@ -1565,3 +1567,4 @@ static int ADIOI_GEN_iwc_wait_fn(int count, void **array_of_states,
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return errcode;
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}
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#endif /* HAVE_MPI_GREQUEST_EXTENSIONS */
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@ -440,18 +440,26 @@ void ADIOI_GEN_ReadStridedColl(ADIO_File fd, void *buf, int count,
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MPI_Datatype datatype, int file_ptr_type,
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ADIO_Offset offset, ADIO_Status *status, int
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*error_code);
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#ifdef HAVE_MPI_GREQUEST_EXTENSIONS
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void ADIOI_GEN_IreadStridedColl(ADIO_File fd, void *buf, int count,
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MPI_Datatype datatype, int file_ptr_type,
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ADIO_Offset offset, MPI_Request *request,
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int *error_code);
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#else
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#define ADIOI_GEN_IreadStridedColl NULL
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#endif
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void ADIOI_GEN_WriteStridedColl(ADIO_File fd, const void *buf, int count,
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MPI_Datatype datatype, int file_ptr_type,
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ADIO_Offset offset, ADIO_Status *status, int
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*error_code);
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#ifdef HAVE_MPI_GREQUEST_EXTENSIONS
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void ADIOI_GEN_IwriteStridedColl(ADIO_File fd, const void *buf, int count,
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MPI_Datatype datatype, int file_ptr_type,
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ADIO_Offset offset, MPI_Request *request,
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int *error_code);
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#else
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#define ADIOI_GEN_IwriteStridedColl NULL
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#endif
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void ADIOI_Calc_my_off_len(ADIO_File fd, int bufcount, MPI_Datatype
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datatype, int file_ptr_type, ADIO_Offset
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offset, ADIO_Offset **offset_list_ptr, ADIO_Offset
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45
ompi/mca/io/romio321/romio/adio/include/romioconf-undefs.h
Обычный файл
45
ompi/mca/io/romio321/romio/adio/include/romioconf-undefs.h
Обычный файл
@ -0,0 +1,45 @@
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/*
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* Copyright (c) 2004-2005 The Trustees of Indiana University and Indiana
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* University Research and Technology
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* Corporation. All rights reserved.
|
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* Copyright (c) 2004-2005 The University of Tennessee and The University
|
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* of Tennessee Research Foundation. All rights
|
||||
* reserved.
|
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* Copyright (c) 2004-2005 High Performance Computing Center Stuttgart,
|
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* University of Stuttgart. All rights reserved.
|
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* Copyright (c) 2004-2005 The Regents of the University of California.
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* All rights reserved.
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* $COPYRIGHT$
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*
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* Additional copyrights may follow
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*
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* $HEADER$
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*/
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#ifndef ROMIO_CONF_UNDEFS_H
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#define ROMIO_CONF_UNDEFS_H
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/* Need to add some undefs here so that we don't conflict with the
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* main ompi_config.h. Arrgh. Stupid autoconf not giving us the option
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* to not define these macros... grumble...
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*/
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#if defined(PACKAGE_BUGREPORT)
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#undef PACKAGE_BUGREPORT
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#endif
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#if defined(PACKAGE_NAME)
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#undef PACKAGE_NAME
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#endif
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#if defined(PACKAGE_STRING)
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#undef PACKAGE_STRING
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#endif
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#if defined(PACKAGE_TARNAME)
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#undef PACKAGE_TARNAME
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#endif
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#if defined(PACKAGE_VERSION)
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#undef PACKAGE_VERSION
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#endif
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#if defined(PACKAGE_URL)
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#undef PACKAGE_URL
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#endif
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#endif /* ROMIOCONF_UNDEFS_H */
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@ -3,12 +3,21 @@
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# autoconf --localdir=../confdb configure.ac
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# (or wherever the confdb is)
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#
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# irrelevant / unnecessary in an Open MPI environment, but are
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# harmless and are left here solely for the sake of ease of future
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# patching/importing.
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AC_PREREQ([2.63])
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m4_include([version.m4])
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dnl 2nd arg is intentionally underquoted
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# Open MPI: Modifications to this file were done on an "let's do the
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# minimum possible" basis, not so that we can skip on the work or
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# provide any less functionality, but more from a perspective that we
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# want to be able to import new versions of ROMIO in as easy a fashion
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# as possible. Hence, there are some things in this file that are
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# irrelevant / unnecessary in an Open MPI environment, but are
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# harmless and are left here solely for the sake of ease of future
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# patching/importing.
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AC_INIT([ROMIO],
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MPICH_VERSION_m4,
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[Open MPI],
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[discuss@mpich.org],
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[romio],
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[http://www.mpich.org/])
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@ -22,7 +31,7 @@ dnl scripts.
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AC_CONFIG_AUX_DIR([confdb])
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AC_CONFIG_MACRO_DIR([confdb])
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AM_INIT_AUTOMAKE([-Wall -Werror -Wno-portability-recursive foreign 1.12.3 silent-rules subdir-objects])
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AM_INIT_AUTOMAKE([-Wall -Werror -Wno-portability-recursive foreign 1.12 silent-rules subdir-objects])
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AM_MAINTAINER_MODE([enable])
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dnl must come before LT_INIT, which AC_REQUIREs AC_PROG_CC
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@ -43,12 +52,15 @@ if test -n "$CONFIGURE_ARGS" ; then
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fi
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AC_CONFIG_HEADER(adio/include/romioconf.h)
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# Open MPI: modified AH_TOP
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AH_TOP([/*
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* (C) 2011 by Argonne National Laboratory.
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* See COPYRIGHT in top-level directory.
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*/
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#ifndef ROMIOCONF_H_INCLUDED
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#define ROMIOCONF_H_INCLUDED
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#include "romioconf-undefs.h"
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])
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AH_BOTTOM([
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/* quash PACKAGE and PACKAGE_* vars, see MPICH top-level configure.ac for
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@ -58,9 +70,37 @@ AH_BOTTOM([
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#endif /* !defined(ROMIOCONF_H_INCLUDED) */
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])
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# Open MPI: this configure script doesn't seem to define these
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# anywhere, so just do them manually here because "we know better"
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# (i.e., Open MPI can be hard-wired to these values).
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AC_DEFINE([HAVE_MPI_OFFSET], [1], [Will always be 1 - OMPI has MPI_OFFSET])
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# Open MPI: look for top Open MPI directory
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AC_MSG_CHECKING([for Open MPI support files])
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if test -f "$srcdir/../../../../../config/opal_mca.m4"; then
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# This is needed for VPATH builds, so that it will -I the
|
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# appropriate include directory (don't know why automake
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# doesn't do this # automatically).
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OMPI_TOP_SRCDIR='$(top_srcdir)/../../../../..'
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OMPI_TOP_BUILDDIR='$(top_builddir)/../../../../..'
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with_mpi="$OMPI_TOP_SRCDIR"
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AC_MSG_RESULT([in Open MPI source tree -- good])
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AC_SUBST(OMPI_TOP_SRCDIR)
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AC_SUBST(OMPI_TOP_BUILDDIR)
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else
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AC_MSG_RESULT([not found])
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AC_MSG_WARN([*** Could not find Open MPI support files])
|
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AC_MSG_WARN([*** Can only build this version of ROMIO in an Open MPI source tree])
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AC_MSG_ERROR([*** Cannot continue])
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fi
|
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|
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dnl
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NOF77=0
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NOF90=0
|
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# Open MPI: disable the f77 and f90 tests, as we provide our own
|
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# MPI interface and use only the C parts of ROMIO
|
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NOF77=1
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NOF90=1
|
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ARCH=""
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arch_IRIX=""
|
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MPI_IMPL=""
|
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@ -95,6 +135,10 @@ AC_ARG_VAR([FROM_OMPI],[set to "yes" if building ROMIO inside of Open MPI])
|
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FROM_OMPI=${FROM_OMPI:-no}
|
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if test "$FROM_OMPI" = 1 ; then FROM_OMPI=yes ; fi
|
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|
||||
AC_ARG_VAR([FROM_OMPI],[set to "yes" if building ROMIO inside of Open MPI])
|
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FROM_OMPI=${FROM_OMPI:-no}
|
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if test "$FROM_OMPI" = 1 ; then FROM_OMPI=yes ; fi
|
||||
|
||||
CFLAGS=${CFLAGS:-""}
|
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LL="lld"
|
||||
AR_LOCAL=""
|
||||
@ -120,7 +164,8 @@ ROMIO_TFFLAGS=""
|
||||
NOPROFILE=0
|
||||
MPIRUN=""
|
||||
FORTRAN_TEST=""
|
||||
MAKE=${MAKE:-"make"}
|
||||
# Open MPI: This (setting make) is a Bad Thing to do in Automake-based build systems
|
||||
# MAKE=${MAKE:-"make"}
|
||||
# foll. needed for f77 test programs
|
||||
F77GETARG="call getarg(i,str)"
|
||||
F77IARGC="iargc()"
|
||||
@ -133,6 +178,18 @@ MPI_OFFSET_KIND2="!"
|
||||
TEST_CC=""
|
||||
TEST_F77=""
|
||||
#
|
||||
# Error handlers (not used with MPICH2, which provides its own routines)
|
||||
MPIO_EXTRA_OBJECTS="get_errh.o set_errh.o"
|
||||
MPIO_EXTRA_TMP_POBJECTS="get_errh.p set_errh.p"
|
||||
MPIO_EXTRA_REAL_POBJECTS="_get_errh.o _set_errh.o"
|
||||
#
|
||||
# Completion routines for MPIO_Requests. MPI Implementations with
|
||||
# generalized requests do not need these
|
||||
# ioreq_c2f and ioreq_f2c are not MPIO_Requests; rather, they
|
||||
MPIO_REQOBJECTS="iotest.o iotestall.o iotestany.o iotestsome.o iowait.o iowaitall.o iowaitany.o iowaitsome.o ioreq_c2f.o ioreq_f2c.o"
|
||||
MPIO_REQ_TMP_POBJECTS="iotest.p iowait.p iowaitall.p iowaitany.p iotestall.p iotestany.p iowaitsome.p iotestsome.p"
|
||||
MPIO_REQ_REAL_POBJECTS="_iotest.o _iowait.o _iowaitall.o _iowaitany.o _iotestall.o _iotestany.o _iowaitsome.o _iotestsome.o"
|
||||
#
|
||||
known_mpi_impls="mpich_mpi mpich_mpi sgi_mpi hp_mpi cray_mpi lam_mpi open_mpi_mpi"
|
||||
|
||||
dnl An m4 macro for use with m4_foreach_w and friends. You should modify this
|
||||
@ -169,7 +226,7 @@ AC_ARG_ENABLE(f77,
|
||||
AC_ARG_ENABLE(f90,
|
||||
[--enable-f90 - Turn on support for Fortran 90 (default)],,enable_f90=yes)
|
||||
AC_ARG_ENABLE(weak-symbols,
|
||||
[--enable-weak-symbols - Turn on support for weak symbols],,enable_weak_symbols=yes)
|
||||
[--enable-weak-symbols - Turn on support for weak symbols],,enable_weak_symbols=no)
|
||||
AC_ARG_ENABLE(debug,
|
||||
[--enable-debug - Build a debugging version],,)
|
||||
AC_ARG_WITH(file-system,[
|
||||
@ -192,9 +249,10 @@ if test "$enable_debug" = "yes" ; then
|
||||
DEBUG=yes
|
||||
fi
|
||||
MPI=$with_mpi
|
||||
if test -n "$with_mpi"; then
|
||||
CC=$MPI/bin/mpicc
|
||||
fi
|
||||
# Open MPI: No!
|
||||
#if test -n "$with_mpi"; then
|
||||
# CC=$MPI/bin/mpicc
|
||||
#fi
|
||||
|
||||
# start with the set of file systems that the user asked for
|
||||
# FILE_SYSTEM=$with_file_system
|
||||
@ -257,6 +315,7 @@ top_build_dir=`pwd`
|
||||
# used in romioinstall
|
||||
AC_SUBST(top_build_dir)
|
||||
|
||||
# Open MPI: these shouldn't be needed with AM
|
||||
#
|
||||
# Create the "autoconf" style directory names...
|
||||
# Most of these are done for us; add the documentation directories
|
||||
@ -378,8 +437,9 @@ if test "$CC" = "gcc" -a -z "$C_DEBUG_FLAG" ; then
|
||||
fi
|
||||
if test $DEBUG = "yes" ; then
|
||||
CFLAGS="$CFLAGS $C_DEBUG_FLAG"
|
||||
else
|
||||
CFLAGS="$CFLAGS $C_OPT_FLAG"
|
||||
# Open MPI: don't add optflags - they'll come from the top-level configure
|
||||
#else
|
||||
# CFLAGS="$CFLAGS $C_OPT_FLAG"
|
||||
fi
|
||||
# ---------------------------------------------------------------------------
|
||||
# Here go the rest of the tests
|
||||
@ -426,7 +486,8 @@ else
|
||||
F77=":"
|
||||
fi
|
||||
#
|
||||
AC_C_INLINE
|
||||
# Open MPI: We already do this test top-level
|
||||
dnl AC_C_INLINE
|
||||
|
||||
AC_TYPE_SIZE_T
|
||||
AC_TYPE_SSIZE_T
|
||||
@ -649,7 +710,9 @@ AM_CONDITIONAL([BUILD_MPIO_ERRHAN],[false])
|
||||
|
||||
# if we don't have weak symbol support, we must build a separate convenience
|
||||
# library in order to provide the "PMPI_" symbols
|
||||
AM_CONDITIONAL([BUILD_PROFILING_LIB],[test "x$HAVE_WEAK_SYMBOLS" = "x0"])
|
||||
# Open MPI: Disable the profile library
|
||||
#AM_CONDITIONAL([BUILD_PROFILING_LIB],[test "x$HAVE_WEAK_SYMBOLS" = "x0"])
|
||||
AM_CONDITIONAL([BUILD_PROFILING_LIB],[false])
|
||||
|
||||
# weird: we have conflated "buid ROMIO's versions of the fortran bindings" and
|
||||
# "build ROMIO"s fortran I/O tests". Of course the common situaiton is that we
|
||||
@ -1447,8 +1510,10 @@ if test $FROM_OMPI = yes ; then
|
||||
HAVE_MPI_DARRAY_SUBARRAY="#define HAVE_MPI_DARRAY_SUBARRAY"
|
||||
# Open MPI: see comments in mpi-io/mpioprof.h
|
||||
AC_DEFINE(MPIO_BUILD_PROFILING, 1, [hack to make ROMIO build without profiling])
|
||||
DEFINE_HAVE_MPI_GREQUEST="#define HAVE_MPI_GREQUEST"
|
||||
DEFINE_HAVE_MPI_GREQUEST="#define HAVE_MPI_GREQUEST 1"
|
||||
DEFINE_HAVE_MPI_GREQUEST_EXTENSIONS="#undef HAVE_MPI_GREQUEST_EXTENSIONS"
|
||||
AC_DEFINE(HAVE_DECL_MPI_COMBINER_HINDEXED_BLOCK, 1, [Define if MPI library provides HINDEXED_BLOCK datatype])
|
||||
AC_DEFINE(HAVE_MPIIO_CONST, 1, Set if MPI-IO prototypes use const qualifier)
|
||||
elif test $FROM_LAM = yes ; then
|
||||
# LAM does have the status set bytes functionality
|
||||
AC_DEFINE(HAVE_STATUS_SET_BYTES,1,[Define if have MPIR_Status_set_bytes])
|
||||
@ -1497,7 +1562,7 @@ elif test $FROM_MPICH = yes ; then
|
||||
DEFINE_HAVE_MPI_GREQUEST_EXTENSIONS="#define HAVE_MPI_GREQUEST_EXTENSIONS 1"
|
||||
AC_DEFINE(HAVE_MPIU_FUNCS,1,[Define if MPICH memory tracing macros defined])
|
||||
AC_DEFINE(HAVE_MPIX_H, 1, [])
|
||||
AC_DEFINE(HAVE_MPIIO_CONST, const, Set if MPI-IO prototypes use const qualifier)
|
||||
AC_DEFINE(HAVE_MPIIO_CONST, 1, Set if MPI-IO prototypes use const qualifier)
|
||||
AC_DEFINE(HAVE_MPI_TYPE_SIZE_X, 1, [Define if MPI library provides MPI_TYPE_SIZE_X])
|
||||
AC_DEFINE(HAVE_MPI_STATUS_SET_ELEMENTS_X, 1, [Define if MPI library provides MPI_STATUS_SET_ELEMENTS_X])
|
||||
AC_DEFINE(HAVE_DECL_MPI_COMBINER_HINDEXED_BLOCK, 1, [Define if MPI library provides HINDEXED_BLOCK datatype])
|
||||
@ -1620,9 +1685,22 @@ fi
|
||||
echo "setting SYSDEP_INC to $SYSDEP_INC"
|
||||
AC_SUBST(SYSDEP_INC)
|
||||
|
||||
# Open MPI: use the exact same restrict test that we use in the
|
||||
# upper-level Open MPI configure script so that we always get the same
|
||||
# #define for "restrict" (there are a small number of files that will
|
||||
# end up including both ROMIO's romioconf.h and opal_config.h, so we
|
||||
# need to #defines to agree).
|
||||
AC_C_RESTRICT
|
||||
PAC_C_GNU_ATTRIBUTE
|
||||
|
||||
# Open MPI: we need libtool
|
||||
AM_PROG_LIBTOOL
|
||||
|
||||
# Open MPI: setup the AM_CONDITIONALs to build the different adio devices
|
||||
m4_foreach([my_fs],
|
||||
[gpfs, gridftp, hfs, lustre, nfs, ntfs, panfs, pfs, pvfs, piofs, pvfs, pvfs2, sfs, testfs, ufs, xfs, zoidfs],
|
||||
[AM_CONDITIONAL(BUILD_[]AS_TR_CPP(my_fs), [test -n "$file_system_]my_fs["])])
|
||||
|
||||
# support gcov test coverage information
|
||||
PAC_ENABLE_COVERAGE
|
||||
|
||||
@ -1634,23 +1712,29 @@ echo "setting CFLAGS to $CFLAGS"
|
||||
echo "setting USER_CFLAGS to $USER_CFLAGS"
|
||||
echo "setting USER_FFLAGS to $USER_FFLAGS"
|
||||
|
||||
# Open MPI: Add on CFLAGS that we figured out up top. They have
|
||||
# makefile macros in them, so we couldn't substitute them until now.
|
||||
CFLAGS="$CFLAGS $OMPI_CFLAGS "'-I$(top_builddir)/include'
|
||||
#
|
||||
# Open MPI - AM doesn't want the following:
|
||||
# VPATH, CC, CPPFLAGS, CFLAGS, AR, RANLIB, F77, MAKE
|
||||
AC_SUBST(ARCH)
|
||||
AC_SUBST(FILE_SYSTEM)
|
||||
AC_SUBST(CC)
|
||||
AC_SUBST(CPPFLAGS)
|
||||
AC_SUBST(CFLAGS)
|
||||
#AC_SUBST(CC)
|
||||
#AC_SUBST(CPPFLAGS)
|
||||
#AC_SUBST(CFLAGS)
|
||||
AC_SUBST(USER_CFLAGS)
|
||||
AC_SUBST(USER_FFLAGS)
|
||||
AC_SUBST(MIPS)
|
||||
AC_SUBST(BITS)
|
||||
AC_SUBST(AR)
|
||||
#AC_SUBST(AR)
|
||||
AC_SUBST(AR_FLAGS)
|
||||
AC_SUBST(MPI_INCLUDE_DIR)
|
||||
AC_SUBST(MPI_LIB)
|
||||
AC_SUBST(F77)
|
||||
#AC_SUBST(F77)
|
||||
AC_SUBST(NOF77)
|
||||
AC_SUBST(NOPROFILE)
|
||||
AC_SUBST(MAKE)
|
||||
#AC_SUBST(MAKE)
|
||||
AC_SUBST(arch_IRIX)
|
||||
AC_SUBST(ROMIO_HOME)
|
||||
AC_SUBST(LIBNAME)
|
||||
@ -1671,6 +1755,7 @@ AC_SUBST(HAVE_MPI_DARRAY_SUBARRAY)
|
||||
AC_SUBST(BUILD_MPI_ARRAY)
|
||||
AC_SUBST(DEFINE_MPI_OFFSET)
|
||||
AC_SUBST(DEFINE_HAVE_MPI_GREQUEST)
|
||||
AC_SUBST(DEFINE_HAVE_MPI_GREQUEST_EXTENSIONS)
|
||||
AC_SUBST(MPI_OFFSET_TYPE)
|
||||
AC_SUBST(MPI_FINFO1)
|
||||
AC_SUBST(MPI_FINFO2)
|
||||
@ -1694,24 +1779,25 @@ AC_SUBST(ROMIO_TCPPFLAGS)
|
||||
AC_SUBST(ROMIO_TFFLAGS)
|
||||
AC_SUBST(MPIRUN)
|
||||
AC_SUBST(FORTRAN_TEST)
|
||||
dnl
|
||||
dnl Support shared libraries
|
||||
if test -z "$ENABLE_SHLIB" ; then
|
||||
ENABLE_SHLIB=none
|
||||
fi
|
||||
AC_SUBST(ENABLE_SHLIB)
|
||||
AC_SUBST(CC_SHL)
|
||||
AC_SUBST(LIBTOOL)
|
||||
#dnl
|
||||
#dnl Support shared libraries
|
||||
#if test -z "$ENABLE_SHLIB" ; then
|
||||
# ENABLE_SHLIB=none
|
||||
#fi
|
||||
#AC_SUBST(ENABLE_SHLIB)
|
||||
#AC_SUBST(CC_SHL)
|
||||
#AC_SUBST(LIBTOOL)
|
||||
# Open MPI: This is no longer necessary with modern versions of autotools
|
||||
# Remove the .a from the library file name (so that we can use .so or
|
||||
# other appropriate suffix)
|
||||
SHLIBNAME=`echo $LIBNAME | sed 's/\.a$//'`
|
||||
AC_SUBST(SHLIBNAME)
|
||||
dnl
|
||||
if test ! -d adio ; then mkdir adio ; fi
|
||||
if test ! -d adio/include ; then mkdir adio/include ; fi
|
||||
if test ! -d mpi2-other ; then mkdir mpi2-other ; fi
|
||||
if test ! -d mpi-io ; then mkdir mpi-io ; fi
|
||||
if test ! -d mpi-io/glue ; then mkdir mpi-io/glue ; fi
|
||||
#SHLIBNAME=`echo $LIBNAME | sed 's/\.a$//'`
|
||||
#AC_SUBST(SHLIBNAME)
|
||||
#dnl
|
||||
#if test ! -d adio ; then mkdir adio ; fi
|
||||
#if test ! -d adio/include ; then mkdir adio/include ; fi
|
||||
#if test ! -d mpi2-other ; then mkdir mpi2-other ; fi
|
||||
#if test ! -d mpi-io ; then mkdir mpi-io ; fi
|
||||
#if test ! -d mpi-io/glue ; then mkdir mpi-io/glue ; fi
|
||||
|
||||
# Create makefiles for all of the adio devices. Only the ones that
|
||||
# are active will be called by the top level ROMIO make
|
||||
@ -1719,8 +1805,6 @@ AC_OUTPUT_COMMANDS([chmod 755 util/romioinstall test/runtests])
|
||||
AC_CONFIG_FILES([
|
||||
Makefile
|
||||
localdefs
|
||||
mpi2-other/info/Makefile
|
||||
mpi2-other/array/Makefile
|
||||
test/Makefile
|
||||
test/misc.c
|
||||
test/large_file.c
|
||||
@ -1728,14 +1812,17 @@ AC_CONFIG_FILES([
|
||||
test-internal/Makefile
|
||||
util/romioinstall
|
||||
include/mpio.h
|
||||
include/mpiof.h
|
||||
mpi2-other/info/fortran/Makefile
|
||||
mpi2-other/array/fortran/Makefile
|
||||
test/fmisc.f
|
||||
test/fcoll_test.f
|
||||
test/pfcoll_test.f
|
||||
test/fperf.f
|
||||
])
|
||||
# Open MPI: intentionally skip the following:
|
||||
# mpi2-other/info/Makefile
|
||||
# mpi2-other/array/Makefile
|
||||
# mpi2-other/info/fortran/Makefile
|
||||
# mpi2-other/array/fortran/Makefile
|
||||
# include/mpiof.h
|
||||
AC_OUTPUT
|
||||
|
||||
dnl PAC_SUBDIR_CACHE_CLEANUP
|
||||
|
||||
@ -807,13 +807,19 @@ to include the file {\tt mpio.h} for C or {\tt mpiof.h} for Fortran in
|
||||
your MPI-IO program.
|
||||
|
||||
Note that on HP machines running HPUX and on NEC SX-4, you need to
|
||||
compile Fortran programs with {\tt mpifort}.
|
||||
compile Fortran programs with {\tt mpifort}, because {\tt mpif77} does
|
||||
not support 8-byte integers.
|
||||
|
||||
With MPICH, HP MPI, or NEC MPI, you can compile MPI-IO programs as \\
|
||||
\hspace*{.4in} {\tt mpicc foo.c}\\
|
||||
or \\
|
||||
\hspace*{.4in} {\tt mpif77 foo.f }\\
|
||||
or\\
|
||||
\hspace*{.4in} {\tt mpifort foo.f}\\
|
||||
|
||||
As mentioned above, mpifort is preferred over mpif77 on HPUX and NEC
|
||||
because the f77 compilers on those machines do not support 8-byte integers.
|
||||
|
||||
With SGI MPI, you can compile MPI-IO programs as \\
|
||||
\hspace*{.4in} {\tt cc foo.c -lmpi}\\
|
||||
or \\
|
||||
@ -863,7 +869,8 @@ file systems because they don't support {\tt fcntl} file locks,
|
||||
and ROMIO uses that feature to implement shared file pointers.
|
||||
|
||||
\item On HP machines running HPUX and on NEC SX-4, you need to compile
|
||||
Fortran programs with {\tt mpifort}.
|
||||
Fortran programs with {\tt mpifort} instead of {\tt mpif77}, because
|
||||
the {\tt f77} compilers on these machines don't support 8-byte integers.
|
||||
|
||||
\item The file-open mode {\tt MPI\_MODE\_EXCL} does not work on Intel
|
||||
PFS file system, due to a bug in PFS.
|
||||
|
||||
129
ompi/mca/io/romio321/romio/include/io_romio_conv.h
Обычный файл
129
ompi/mca/io/romio321/romio/include/io_romio_conv.h
Обычный файл
@ -0,0 +1,129 @@
|
||||
/*
|
||||
* Copyright (c) 2004-2005 The Trustees of Indiana University and Indiana
|
||||
* University Research and Technology
|
||||
* Corporation. All rights reserved.
|
||||
* Copyright (c) 2004-2005 The University of Tennessee and The University
|
||||
* of Tennessee Research Foundation. All rights
|
||||
* reserved.
|
||||
* Copyright (c) 2004-2005 High Performance Computing Center Stuttgart,
|
||||
* University of Stuttgart. All rights reserved.
|
||||
* Copyright (c) 2004-2005 The Regents of the University of California.
|
||||
* All rights reserved.
|
||||
* $COPYRIGHT$
|
||||
*
|
||||
* Additional copyrights may follow
|
||||
*
|
||||
* $HEADER$
|
||||
*/
|
||||
|
||||
#ifndef MCA_IO_ROMIO_CONV_H
|
||||
#define MCA_IO_ROMIO_CONV_H
|
||||
|
||||
/* Prefix that we add to all ROMIO symbols */
|
||||
#ifdef ROMIO_PREFIX
|
||||
#undef ROMIO_PREFIX
|
||||
#endif
|
||||
#define ROMIO_PREFIX(foo) mca_io_romio_dist_##foo
|
||||
|
||||
/* Section 9.2 */
|
||||
/* Begin Prototypes */
|
||||
#define MPI_File_open ROMIO_PREFIX(MPI_File_open)
|
||||
#define MPI_File_close ROMIO_PREFIX(MPI_File_close)
|
||||
#define MPI_File_delete ROMIO_PREFIX(MPI_File_delete)
|
||||
#define MPI_File_set_size ROMIO_PREFIX(MPI_File_set_size)
|
||||
#define MPI_File_preallocate ROMIO_PREFIX(MPI_File_preallocate)
|
||||
#define MPI_File_get_size ROMIO_PREFIX(MPI_File_get_size)
|
||||
#define MPI_File_get_group ROMIO_PREFIX(MPI_File_get_group)
|
||||
#define MPI_File_get_amode ROMIO_PREFIX(MPI_File_get_amode)
|
||||
#define MPI_File_set_info ROMIO_PREFIX(MPI_File_set_info)
|
||||
#define MPI_File_get_info ROMIO_PREFIX(MPI_File_get_info)
|
||||
|
||||
/* Section 9.3 */
|
||||
#define MPI_File_set_view ROMIO_PREFIX(MPI_File_set_view)
|
||||
#define MPI_File_get_view ROMIO_PREFIX(MPI_File_get_view)
|
||||
|
||||
/* Section 9.4.2 */
|
||||
#define MPI_File_read_at ROMIO_PREFIX(MPI_File_read_at)
|
||||
#define MPI_File_read_at_all ROMIO_PREFIX(MPI_File_read_at_all)
|
||||
#define MPI_File_write_at ROMIO_PREFIX(MPI_File_write_at)
|
||||
#define MPI_File_write_at_all ROMIO_PREFIX(MPI_File_write_at_all)
|
||||
#define MPI_File_iread_at ROMIO_PREFIX(MPI_File_iread_at)
|
||||
#define MPI_File_iwrite_at ROMIO_PREFIX(MPI_File_iwrite_at)
|
||||
|
||||
/* Section 9.4.3 */
|
||||
#define MPI_File_read ROMIO_PREFIX(MPI_File_read)
|
||||
#define MPI_File_read_all ROMIO_PREFIX(MPI_File_read_all)
|
||||
#define MPI_File_write ROMIO_PREFIX(MPI_File_write)
|
||||
#define MPI_File_write_all ROMIO_PREFIX(MPI_File_write_all)
|
||||
|
||||
#define MPI_File_iread ROMIO_PREFIX(MPI_File_iread)
|
||||
#define MPI_File_iread_all ROMIO_PREFIX(MPI_File_iread_all)
|
||||
#define MPI_File_iwrite ROMIO_PREFIX(MPI_File_iwrite)
|
||||
#define MPI_File_iwrite_all ROMIO_PREFIX(MPI_File_iwrite_all)
|
||||
#define MPI_File_iread_at_all ROMIO_PREFIX(MPI_File_iread_at_all)
|
||||
#define MPI_File_iwrite_at_all ROMIO_PREFIX(MPI_File_iwrite_at_all)
|
||||
|
||||
|
||||
#define MPI_File_seek ROMIO_PREFIX(MPI_File_seek)
|
||||
#define MPI_File_get_position ROMIO_PREFIX(MPI_File_get_position)
|
||||
#define MPI_File_get_byte_offset ROMIO_PREFIX(MPI_File_get_byte_offset)
|
||||
|
||||
/* Section 9.4.4 */
|
||||
#define MPI_File_read_shared ROMIO_PREFIX(MPI_File_read_shared)
|
||||
#define MPI_File_write_shared ROMIO_PREFIX(MPI_File_write_shared)
|
||||
#define MPI_File_iread_shared ROMIO_PREFIX(MPI_File_iread_shared)
|
||||
#define MPI_File_iwrite_shared ROMIO_PREFIX(MPI_File_iwrite_shared)
|
||||
#define MPI_File_read_ordered ROMIO_PREFIX(MPI_File_read_ordered)
|
||||
#define MPI_File_write_ordered ROMIO_PREFIX(MPI_File_write_ordered)
|
||||
#define MPI_File_seek_shared ROMIO_PREFIX(MPI_File_seek_shared)
|
||||
#define MPI_File_get_position_shared ROMIO_PREFIX(MPI_File_get_position_shared)
|
||||
|
||||
/* Section 9.4.5 */
|
||||
#define MPI_File_read_at_all_begin ROMIO_PREFIX(MPI_File_read_at_all_begin)
|
||||
#define MPI_File_read_at_all_end ROMIO_PREFIX(MPI_File_read_at_all_end)
|
||||
#define MPI_File_write_at_all_begin ROMIO_PREFIX(MPI_File_write_at_all_begin)
|
||||
#define MPI_File_write_at_all_end ROMIO_PREFIX(MPI_File_write_at_all_end)
|
||||
#define MPI_File_read_all_begin ROMIO_PREFIX(MPI_File_read_all_begin)
|
||||
#define MPI_File_read_all_end ROMIO_PREFIX(MPI_File_read_all_end)
|
||||
#define MPI_File_write_all_begin ROMIO_PREFIX(MPI_File_write_all_begin)
|
||||
#define MPI_File_write_all_end ROMIO_PREFIX(MPI_File_write_all_end)
|
||||
#define MPI_File_read_ordered_begin ROMIO_PREFIX(MPI_File_read_ordered_begin)
|
||||
#define MPI_File_read_ordered_end ROMIO_PREFIX(MPI_File_read_ordered_end)
|
||||
#define MPI_File_write_ordered_begin ROMIO_PREFIX(MPI_File_write_ordered_begin)
|
||||
#define MPI_File_write_ordered_end ROMIO_PREFIX(MPI_File_write_ordered_end)
|
||||
|
||||
/* Section 9.5.1 */
|
||||
#define MPI_File_get_type_extent ROMIO_PREFIX(MPI_File_get_type_extent)
|
||||
|
||||
/* Section 9.6.1 */
|
||||
#define MPI_File_set_atomicity ROMIO_PREFIX(MPI_File_set_atomicity)
|
||||
#define MPI_File_get_atomicity ROMIO_PREFIX(MPI_File_get_atomicity)
|
||||
#define MPI_File_sync ROMIO_PREFIX(MPI_File_sync)
|
||||
|
||||
/* Section 4.13.3 */
|
||||
#define MPI_File_set_errhandler ROMIO_PREFIX(MPI_File_set_errhandler)
|
||||
#define MPI_File_get_errhandler ROMIO_PREFIX(MPI_File_get_errhandler)
|
||||
/* End Prototypes */
|
||||
|
||||
#define MPI_Register_datarep ROMIO_PREFIX(MPI_Register_datarep)
|
||||
|
||||
/* JMS these don't seem to work... */
|
||||
#define MPI_File_f2c ROMIO_PREFIX(MPI_File_f2c)
|
||||
#define MPI_File_c2f ROMIO_PREFIX(MPI_File_c2f)
|
||||
|
||||
#define MPIO_Request_c2f ROMIO_PREFIX(MPIO_Request_c2f)
|
||||
#define MPIO_Request_f2c ROMIO_PREFIX(MPIO_Request_f2c)
|
||||
|
||||
/* Conversion of MPI_File and MPIO_Request */
|
||||
#define MPI_File ROMIO_PREFIX(MPI_File)
|
||||
|
||||
/* Open MPI's mpi.h #define's MPI_FILE_NULL, so we need to undef it
|
||||
here and allow it to be re-assigned to whatever ROMIO wants */
|
||||
#undef MPI_FILE_NULL
|
||||
|
||||
/* Let's not use MPIR_Status_set_bytes */
|
||||
#ifndef MPIR_Status_set_bytes
|
||||
#define MPIR_Status_set_bytes ROMIO_PREFIX(MPIR_Status_set_bytes)
|
||||
#endif
|
||||
|
||||
#endif /* MCA_IO_ROMIO_CONV_H */
|
||||
@ -11,6 +11,16 @@
|
||||
#define MPIO_INCLUDE
|
||||
|
||||
#include "mpi.h"
|
||||
/* Open MPI: We need to rename almost all of these functions, as well
|
||||
a the types to be names that conform to the prefix rule */
|
||||
#include "io_romio_conv.h"
|
||||
|
||||
#define MPIIMPL_HAVE_MPI_COMBINER_DARRAY 1
|
||||
#define MPIIMPL_HAVE_MPI_TYPE_CREATE_DARRAY 1
|
||||
#define MPIIMPL_HAVE_MPI_COMBINER_SUBARRAY 1
|
||||
#define MPIIMPL_HAVE_MPI_TYPE_CREATE_DARRAY 1
|
||||
#define MPIIMPL_HAVE_MPI_COMBINER_DUP 1
|
||||
#define MPICH_ATTR_POINTER_WITH_TYPE_TAG(x,y)
|
||||
|
||||
#if defined(__cplusplus)
|
||||
extern "C" {
|
||||
@ -38,6 +48,8 @@ typedef struct ADIOI_RequestD *MPIO_Request;
|
||||
#endif
|
||||
#define MPIO_REQUEST_DEFINED
|
||||
|
||||
@DEFINE_HAVE_MPI_GREQUEST_EXTENSIONS@
|
||||
|
||||
#ifndef HAVE_MPI_OFFSET
|
||||
@DEFINE_MPI_OFFSET@
|
||||
/* If we needed to define MPI_Offset, then we also need to make
|
||||
@ -279,9 +291,12 @@ int MPI_Type_create_darray(int size, int rank, int ndims, const int array_of_gsi
|
||||
#endif
|
||||
#endif
|
||||
/* above needed for some versions of mpi.h in MPICH!! */
|
||||
/* Open MPI: I can't seem to make these #define properly. Oh well --
|
||||
we don't need them anyway :-( */
|
||||
#if 0
|
||||
MPI_File MPI_File_f2c(MPI_Fint file);
|
||||
MPI_Fint MPI_File_c2f(MPI_File file);
|
||||
|
||||
#endif
|
||||
|
||||
#ifndef HAVE_MPI_GREQUEST
|
||||
/* The following functions are required if generalized requests are not
|
||||
@ -329,15 +344,21 @@ int MPI_Info_free(MPI_Info *info);
|
||||
#endif
|
||||
#endif
|
||||
/* above needed for some versions of mpi.h in MPICH!! */
|
||||
/* Open MPI: we don't need these in ROMIO */
|
||||
#if 0
|
||||
MPI_Fint MPI_Info_c2f(MPI_Info info);
|
||||
MPI_Info MPI_Info_f2c(MPI_Fint info);
|
||||
#endif
|
||||
#endif
|
||||
|
||||
#endif /* HAVE_PRAGMA_HP_SEC_DEF */
|
||||
|
||||
|
||||
/**************** BINDINGS FOR THE PROFILING INTERFACE ***************/
|
||||
|
||||
/* Open MPI: We don't want any of the profiling layer */
|
||||
#if 0
|
||||
|
||||
|
||||
/* Section 9.2 */
|
||||
int PMPI_File_open(MPI_Comm, const char *, int, MPI_Info, MPI_File *);
|
||||
@ -528,6 +549,8 @@ MPI_Fint PMPI_Info_c2f(MPI_Info);
|
||||
MPI_Info PMPI_Info_f2c(MPI_Fint);
|
||||
#endif
|
||||
|
||||
#endif /* Open MPI: We don't want any of the profiling layer */
|
||||
|
||||
#if defined(__cplusplus)
|
||||
}
|
||||
#endif
|
||||
|
||||
@ -14,8 +14,6 @@ noinst_HEADERS += mpi-io/mpioimpl.h mpi-io/mpioprof.h
|
||||
romio_mpi_sources += \
|
||||
mpi-io/close.c \
|
||||
mpi-io/delete.c \
|
||||
mpi-io/file_c2f.c \
|
||||
mpi-io/file_f2c.c \
|
||||
mpi-io/fsync.c \
|
||||
mpi-io/get_amode.c \
|
||||
mpi-io/get_atom.c \
|
||||
|
||||
@ -76,8 +76,13 @@ int MPI_File_close(MPI_File *fh)
|
||||
* somehow inform the MPI library that we no longer hold a reference to any
|
||||
* user defined error handler. We do this by setting the errhandler at this
|
||||
* point to MPI_ERRORS_RETURN. */
|
||||
/* Open MPI: The call to PMPI_File_set_errhandler has to be done in romio/src/io_romio_file_open.c
|
||||
in routine mca_io_romio_file_close()
|
||||
*/
|
||||
#if 0
|
||||
error_code = PMPI_File_set_errhandler(*fh, MPI_ERRORS_RETURN);
|
||||
if (error_code != MPI_SUCCESS) goto fn_fail;
|
||||
#endif
|
||||
|
||||
ADIO_Close(adio_fh, &error_code);
|
||||
MPIO_File_free(fh);
|
||||
|
||||
@ -7,6 +7,7 @@
|
||||
|
||||
include $(top_srcdir)/mpi-io/glue/default/Makefile.mk
|
||||
include $(top_srcdir)/mpi-io/glue/mpich/Makefile.mk
|
||||
include $(top_srcdir)/mpi-io/glue/openmpi/Makefile.mk
|
||||
|
||||
if !BUILD_ROMIO_EMBEDDED
|
||||
romio_other_sources += \
|
||||
|
||||
@ -26,7 +26,7 @@ int MPI_File_iread_all(MPI_File fh, void *buf, int count, MPI_Datatype datatype,
|
||||
#include "mpioprof.h"
|
||||
#endif
|
||||
|
||||
#ifdef HAVE_MPI_GREQUEST
|
||||
#if HAVE_MPI_GREQUEST
|
||||
#include "mpiu_greq.h"
|
||||
#endif
|
||||
|
||||
|
||||
@ -10,6 +10,15 @@
|
||||
building the profiling interface
|
||||
*/
|
||||
|
||||
/*
|
||||
* Open MPI: Unfortunately, ROMIO doesn't seem to be able to build
|
||||
* without a profiling interface, but we don't want a profiling
|
||||
* interface, since we are just using ROMIO "behind the scenes".
|
||||
* So enable all the profiling defines, only compile once, and don't
|
||||
* do all the name mangling. The effect is about the same, but without
|
||||
* modification to all the files in the mpi-io directory.
|
||||
*/
|
||||
#if 0
|
||||
#ifdef MPIO_BUILD_PROFILING
|
||||
|
||||
#undef MPI_File_open
|
||||
@ -212,3 +221,4 @@
|
||||
#define MPIX_Grequest_class_create PMPIX_Grequest_class_create
|
||||
|
||||
#endif
|
||||
#endif
|
||||
|
||||
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