openmpi/ompi/tools/mpisync/ompi_timing_post

#!/bin/bash
#
# Copyright (c) 2014      Artem Polyakov <artpol84@gmail.com>
# $COPYRIGHT$
#
# Additional copyrights may follow
#
# $HEADER$

#####################################################################
# Evaluate a floating point number expression.

function float_eval(){    
    float_scale=9
    local stat=0    
    local result=0.0    
    if [[ $# -gt 0 ]]; then
        result=$(echo "scale=$float_scale; $*" | bc -q 2>/dev/null)
        stat=$?
        if [[ $stat -eq 0  &&  -z "$result" ]]; then
            stat=1; 
        fi    
    fi    
    echo $result    
    return $stat
}

if [ -z "$1" ] || [ -z "$2" ]; then
    echo "Need the name of a timing file and the output file"
    exit 0
fi

thefile=$1
postfile=$2
sed '/^$/d' $thefile > ${thefile}_tmp
sort  ${thefile}_tmp > ${postfile}

read line < ${postfile}
first_ts=`echo $line | awk '{ print $1 }' | sed -e 's/s//'`
prev_ts=$first_ts
echo $first_ts

while read line ; do
    cur_ts=`echo $line | awk '{ print $1 }' | sed -e 's/s//'`
    dif1=`float_eval "$cur_ts - $first_ts"`
    dif2=`float_eval "$cur_ts - $prev_ts"`
    newline=`echo $line | sed -e "s/$cur_ts/$dif1:$dif2/"`
    prev_ts=$cur_ts
    echo $newline
done <  ${postfile} > ${thefile}_tmp

cat ${thefile}_tmp > ${postfile}

rm -f ${thefile}_tmp