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openmpi/ompi/mca/pml/ob1/pml_ob1.c

999 строки
37 KiB
C
Исходник Обычный вид История

/* -*- Mode: C; c-basic-offset:4 ; indent-tabs-mode:nil -*- */
/*
* Copyright (c) 2004-2010 The Trustees of Indiana University and Indiana
* University Research and Technology
* Corporation. All rights reserved.
* Copyright (c) 2004-2012 The University of Tennessee and The University
* of Tennessee Research Foundation. All rights
* reserved.
* Copyright (c) 2004-2005 High Performance Computing Center Stuttgart,
* University of Stuttgart. All rights reserved.
* Copyright (c) 2004-2005 The Regents of the University of California.
* All rights reserved.
* Copyright (c) 2008 UT-Battelle, LLC. All rights reserved.
* Copyright (c) 2006-2008 University of Houston. All rights reserved.
* Copyright (c) 2009-2010 Oracle and/or its affiliates. All rights reserved
* Copyright (c) 2011 Sandia National Laboratories. All rights reserved.
* Copyright (c) 2011-2012 Los Alamos National Security, LLC. All rights
* reserved.
* Copyright (c) 2012 Cisco Systems, Inc. All rights reserved.
* $COPYRIGHT$
*
* Additional copyrights may follow
*
* $HEADER$
*/
#include "ompi_config.h"
#include <stdlib.h>
#include <string.h>
#include "opal/class/opal_bitmap.h"
#include "opal/util/output.h"
#include "opal/util/show_help.h"
#include "opal_stdint.h"
#include "ompi/mca/pml/pml.h"
#include "ompi/mca/pml/base/base.h"
#include "ompi/mca/btl/btl.h"
#include "ompi/mca/pml/base/base.h"
#include "ompi/mca/btl/base/base.h"
#include "ompi/mca/bml/base/base.h"
#include "ompi/runtime/ompi_cr.h"
#include "pml_ob1.h"
#include "pml_ob1_component.h"
#include "pml_ob1_comm.h"
#include "pml_ob1_hdr.h"
#include "pml_ob1_recvfrag.h"
#include "pml_ob1_sendreq.h"
#include "pml_ob1_recvreq.h"
#include "pml_ob1_rdmafrag.h"
mca_pml_ob1_t mca_pml_ob1 = {
{
mca_pml_ob1_add_procs,
mca_pml_ob1_del_procs,
mca_pml_ob1_enable,
mca_pml_ob1_progress,
mca_pml_ob1_add_comm,
mca_pml_ob1_del_comm,
mca_pml_ob1_irecv_init,
mca_pml_ob1_irecv,
mca_pml_ob1_recv,
mca_pml_ob1_isend_init,
mca_pml_ob1_isend,
mca_pml_ob1_send,
mca_pml_ob1_iprobe,
mca_pml_ob1_probe,
mca_pml_ob1_start,
mca_pml_ob1_improbe,
mca_pml_ob1_mprobe,
mca_pml_ob1_imrecv,
mca_pml_ob1_mrecv,
mca_pml_ob1_dump,
mca_pml_ob1_ft_event,
65535,
INT_MAX
}
};
void mca_pml_ob1_error_handler( struct mca_btl_base_module_t* btl,
int32_t flags, ompi_proc_t* errproc,
char* btlinfo );
int mca_pml_ob1_enable(bool enable)
{
if( false == enable ) {
return OMPI_SUCCESS;
}
OBJ_CONSTRUCT(&mca_pml_ob1.lock, opal_mutex_t);
/* fragments */
OBJ_CONSTRUCT(&mca_pml_ob1.rdma_frags, ompi_free_list_t);
ompi_free_list_init_new( &mca_pml_ob1.rdma_frags,
sizeof(mca_pml_ob1_rdma_frag_t),
opal_cache_line_size,
OBJ_CLASS(mca_pml_ob1_rdma_frag_t),
0,opal_cache_line_size,
mca_pml_ob1.free_list_num,
mca_pml_ob1.free_list_max,
mca_pml_ob1.free_list_inc,
NULL );
OBJ_CONSTRUCT(&mca_pml_ob1.recv_frags, ompi_free_list_t);
ompi_free_list_init_new( &mca_pml_ob1.recv_frags,
sizeof(mca_pml_ob1_recv_frag_t) + mca_pml_ob1.unexpected_limit,
opal_cache_line_size,
OBJ_CLASS(mca_pml_ob1_recv_frag_t),
0,opal_cache_line_size,
mca_pml_ob1.free_list_num,
mca_pml_ob1.free_list_max,
mca_pml_ob1.free_list_inc,
NULL );
OBJ_CONSTRUCT(&mca_pml_ob1.pending_pckts, ompi_free_list_t);
ompi_free_list_init_new( &mca_pml_ob1.pending_pckts,
sizeof(mca_pml_ob1_pckt_pending_t),
opal_cache_line_size,
OBJ_CLASS(mca_pml_ob1_pckt_pending_t),
0,opal_cache_line_size,
mca_pml_ob1.free_list_num,
mca_pml_ob1.free_list_max,
mca_pml_ob1.free_list_inc,
NULL );
OBJ_CONSTRUCT(&mca_pml_ob1.buffers, ompi_free_list_t);
OBJ_CONSTRUCT(&mca_pml_ob1.send_ranges, ompi_free_list_t);
ompi_free_list_init_new( &mca_pml_ob1.send_ranges,
sizeof(mca_pml_ob1_send_range_t) +
(mca_pml_ob1.max_send_per_range - 1) * sizeof(mca_pml_ob1_com_btl_t),
opal_cache_line_size,
OBJ_CLASS(mca_pml_ob1_send_range_t),
0,opal_cache_line_size,
mca_pml_ob1.free_list_num,
mca_pml_ob1.free_list_max,
mca_pml_ob1.free_list_inc,
NULL );
/* pending operations */
OBJ_CONSTRUCT(&mca_pml_ob1.send_pending, opal_list_t);
OBJ_CONSTRUCT(&mca_pml_ob1.recv_pending, opal_list_t);
OBJ_CONSTRUCT(&mca_pml_ob1.pckt_pending, opal_list_t);
OBJ_CONSTRUCT(&mca_pml_ob1.rdma_pending, opal_list_t);
/* missing communicator pending list */
OBJ_CONSTRUCT(&mca_pml_ob1.non_existing_communicator_pending, opal_list_t);
/**
* If we get here this is the PML who get selected for the run. We
* should get ownership for the send and receive requests list, and
* initialize them with the size of our own requests.
*/
ompi_free_list_init_new( &mca_pml_base_send_requests,
sizeof(mca_pml_ob1_send_request_t) +
(mca_pml_ob1.max_rdma_per_request - 1) *
sizeof(mca_pml_ob1_com_btl_t),
opal_cache_line_size,
OBJ_CLASS(mca_pml_ob1_send_request_t),
0,opal_cache_line_size,
mca_pml_ob1.free_list_num,
mca_pml_ob1.free_list_max,
mca_pml_ob1.free_list_inc,
NULL );
ompi_free_list_init_new( &mca_pml_base_recv_requests,
sizeof(mca_pml_ob1_recv_request_t) +
(mca_pml_ob1.max_rdma_per_request - 1) *
sizeof(mca_pml_ob1_com_btl_t),
opal_cache_line_size,
OBJ_CLASS(mca_pml_ob1_recv_request_t),
0,opal_cache_line_size,
mca_pml_ob1.free_list_num,
mca_pml_ob1.free_list_max,
mca_pml_ob1.free_list_inc,
NULL );
mca_pml_ob1.enabled = true;
return OMPI_SUCCESS;
}
int mca_pml_ob1_add_comm(ompi_communicator_t* comm)
{
/* allocate pml specific comm data */
mca_pml_ob1_comm_t* pml_comm = OBJ_NEW(mca_pml_ob1_comm_t);
opal_list_item_t *item, *next_item;
mca_pml_ob1_recv_frag_t* frag;
mca_pml_ob1_comm_proc_t* pml_proc;
mca_pml_ob1_match_hdr_t* hdr;
int i;
if (NULL == pml_comm) {
return OMPI_ERR_OUT_OF_RESOURCE;
}
/* should never happen, but it was, so check */
if (comm->c_contextid > mca_pml_ob1.super.pml_max_contextid) {
OBJ_RELEASE(pml_comm);
return OMPI_ERR_OUT_OF_RESOURCE;
}
mca_pml_ob1_comm_init_size(pml_comm, comm->c_remote_group->grp_proc_count);
comm->c_pml_comm = pml_comm;
for( i = 0; i < comm->c_remote_group->grp_proc_count; i++ ) {
pml_comm->procs[i].ompi_proc = ompi_group_peer_lookup(comm->c_remote_group,i);
OBJ_RETAIN(pml_comm->procs[i].ompi_proc);
}
/* Grab all related messages from the non_existing_communicator pending queue */
for( item = opal_list_get_first(&mca_pml_ob1.non_existing_communicator_pending);
item != opal_list_get_end(&mca_pml_ob1.non_existing_communicator_pending);
item = next_item ) {
frag = (mca_pml_ob1_recv_frag_t*)item;
next_item = opal_list_get_next(item);
hdr = &frag->hdr.hdr_match;
/* Is this fragment for the current communicator ? */
if( frag->hdr.hdr_match.hdr_ctx != comm->c_contextid )
continue;
/* As we now know we work on a fragment for this communicator
* we should remove it from the
* non_existing_communicator_pending list. */
opal_list_remove_item( &mca_pml_ob1.non_existing_communicator_pending,
item );
add_fragment_to_unexpected:
/* We generate the MSG_ARRIVED event as soon as the PML is aware
* of a matching fragment arrival. Independing if it is received
* on the correct order or not. This will allow the tools to
* figure out if the messages are not received in the correct
* order (if multiple network interfaces).
*/
PERUSE_TRACE_MSG_EVENT(PERUSE_COMM_MSG_ARRIVED, comm,
hdr->hdr_src, hdr->hdr_tag, PERUSE_RECV);
/* There is no matching to be done, and no lock to be held on the communicator as
* we know at this point that the communicator has not yet been returned to the user.
* The only required protection is around the non_existing_communicator_pending queue.
* We just have to push the fragment into the unexpected list of the corresponding
* proc, or into the out-of-order (cant_match) list.
*/
pml_proc = &(pml_comm->procs[hdr->hdr_src]);
if( ((uint16_t)hdr->hdr_seq) == ((uint16_t)pml_proc->expected_sequence) ) {
/* We're now expecting the next sequence number. */
pml_proc->expected_sequence++;
opal_list_append( &pml_proc->unexpected_frags, (opal_list_item_t*)frag );
PERUSE_TRACE_MSG_EVENT(PERUSE_COMM_MSG_INSERT_IN_UNEX_Q, comm,
hdr->hdr_src, hdr->hdr_tag, PERUSE_RECV);
/* And now the ugly part. As some fragments can be inserted in the cant_match list,
* every time we succesfully add a fragment in the unexpected list we have to make
* sure the next one is not in the cant_match. Otherwise, we will endup in a deadlock
* situation as the cant_match is only checked when a new fragment is received from
* the network.
*/
for(frag = (mca_pml_ob1_recv_frag_t *)opal_list_get_first(&pml_proc->frags_cant_match);
frag != (mca_pml_ob1_recv_frag_t *)opal_list_get_end(&pml_proc->frags_cant_match);
frag = (mca_pml_ob1_recv_frag_t *)opal_list_get_next(frag)) {
hdr = &frag->hdr.hdr_match;
/* If the message has the next expected seq from that proc... */
if(hdr->hdr_seq != pml_proc->expected_sequence)
continue;
opal_list_remove_item(&pml_proc->frags_cant_match, (opal_list_item_t*)frag);
goto add_fragment_to_unexpected;
}
} else {
opal_list_append( &pml_proc->frags_cant_match, (opal_list_item_t*)frag );
}
}
return OMPI_SUCCESS;
}
int mca_pml_ob1_del_comm(ompi_communicator_t* comm)
{
mca_pml_ob1_comm_t* pml_comm = comm->c_pml_comm;
int i;
for( i = 0; i < comm->c_remote_group->grp_proc_count; i++ ) {
OBJ_RELEASE(pml_comm->procs[i].ompi_proc);
}
OBJ_RELEASE(comm->c_pml_comm);
comm->c_pml_comm = NULL;
return OMPI_SUCCESS;
}
/*
* For each proc setup a datastructure that indicates the BTLs
* that can be used to reach the destination.
*
*/
int mca_pml_ob1_add_procs(ompi_proc_t** procs, size_t nprocs)
{
opal_bitmap_t reachable;
int rc;
size_t i;
opal_list_item_t *item;
if(nprocs == 0)
return OMPI_SUCCESS;
/* we don't have any endpoint data we need to cache on the
ompi_proc_t, so set proc_pml to NULL */
for (i = 0 ; i < nprocs ; ++i) {
procs[i]->proc_pml = NULL;
}
OBJ_CONSTRUCT(&reachable, opal_bitmap_t);
rc = opal_bitmap_init(&reachable, (int)nprocs);
if(OMPI_SUCCESS != rc)
return rc;
/*
* JJH: Disable this in FT enabled builds since
* we use a wrapper PML. It will cause this check to
* return failure as all processes will return the wrapper PML
* component in use instead of the wrapped PML component underneath.
*/
#if OPAL_ENABLE_FT_CR == 0
/* make sure remote procs are using the same PML as us */
if (OMPI_SUCCESS != (rc = mca_pml_base_pml_check_selected("ob1",
procs,
nprocs))) {
return rc;
}
#endif
rc = mca_bml.bml_add_procs( nprocs,
procs,
&reachable );
if(OMPI_SUCCESS != rc)
goto cleanup_and_return;
/* Check that values supplied by all initialized btls will work
for us. Note that this is the list of all initialized BTLs,
not the ones used for the just added procs. This is a little
overkill and inaccurate, as we may end up not using the BTL in
question and all add_procs calls after the first one are
duplicating an already completed check. But the final
initialization of the PML occurs before the final
initialization of the BTLs, and iterating through the in-use
BTLs requires iterating over the procs, as the BML does not
expose all currently in use btls. */
for (item = opal_list_get_first(&mca_btl_base_modules_initialized) ;
item != opal_list_get_end(&mca_btl_base_modules_initialized) ;
item = opal_list_get_next(item)) {
mca_btl_base_selected_module_t *sm =
(mca_btl_base_selected_module_t*) item;
if (sm->btl_module->btl_eager_limit < sizeof(mca_pml_ob1_hdr_t)) {
opal_show_help("help-mpi-pml-ob1.txt", "eager_limit_too_small",
true,
sm->btl_component->btl_version.mca_component_name,
ompi_process_info.nodename,
sm->btl_component->btl_version.mca_component_name,
sm->btl_module->btl_eager_limit,
sm->btl_component->btl_version.mca_component_name,
sizeof(mca_pml_ob1_hdr_t),
sm->btl_component->btl_version.mca_component_name);
rc = OMPI_ERR_BAD_PARAM;
goto cleanup_and_return;
}
}
/* TODO: Move these callback registration to another place */
rc = mca_bml.bml_register( MCA_PML_OB1_HDR_TYPE_MATCH,
mca_pml_ob1_recv_frag_callback_match,
NULL );
if(OMPI_SUCCESS != rc)
goto cleanup_and_return;
rc = mca_bml.bml_register( MCA_PML_OB1_HDR_TYPE_RNDV,
mca_pml_ob1_recv_frag_callback_rndv,
NULL );
if(OMPI_SUCCESS != rc)
goto cleanup_and_return;
rc = mca_bml.bml_register( MCA_PML_OB1_HDR_TYPE_RGET,
mca_pml_ob1_recv_frag_callback_rget,
NULL );
if(OMPI_SUCCESS != rc)
goto cleanup_and_return;
rc = mca_bml.bml_register( MCA_PML_OB1_HDR_TYPE_ACK,
mca_pml_ob1_recv_frag_callback_ack,
NULL );
if(OMPI_SUCCESS != rc)
goto cleanup_and_return;
rc = mca_bml.bml_register( MCA_PML_OB1_HDR_TYPE_FRAG,
mca_pml_ob1_recv_frag_callback_frag,
NULL );
if(OMPI_SUCCESS != rc)
goto cleanup_and_return;
rc = mca_bml.bml_register( MCA_PML_OB1_HDR_TYPE_PUT,
mca_pml_ob1_recv_frag_callback_put,
NULL );
if(OMPI_SUCCESS != rc)
goto cleanup_and_return;
rc = mca_bml.bml_register( MCA_PML_OB1_HDR_TYPE_FIN,
mca_pml_ob1_recv_frag_callback_fin,
NULL );
if(OMPI_SUCCESS != rc)
goto cleanup_and_return;
/* register error handlers */
rc = mca_bml.bml_register_error(mca_pml_ob1_error_handler);
if(OMPI_SUCCESS != rc)
goto cleanup_and_return;
cleanup_and_return:
OBJ_DESTRUCT(&reachable);
return rc;
}
/*
* iterate through each proc and notify any PTLs associated
* with the proc that it is/has gone away
*/
int mca_pml_ob1_del_procs(ompi_proc_t** procs, size_t nprocs)
{
return mca_bml.bml_del_procs(nprocs, procs);
}
/*
* diagnostics
*/
static void mca_pml_ob1_dump_hdr(mca_pml_ob1_hdr_t* hdr)
{
char *type, header[128];
switch(hdr->hdr_common.hdr_type) {
case MCA_PML_OB1_HDR_TYPE_MATCH:
type = "MATCH";
snprintf( header, 128, "ctx %5d src %d tag %d seq %d",
hdr->hdr_match.hdr_ctx, hdr->hdr_match.hdr_src,
hdr->hdr_match.hdr_tag, hdr->hdr_match.hdr_seq);
break;
case MCA_PML_OB1_HDR_TYPE_RNDV:
type = "RNDV";
snprintf( header, 128, "ctx %5d src %d tag %d seq %d msg_length %" PRIu64,
hdr->hdr_rndv.hdr_match.hdr_ctx, hdr->hdr_rndv.hdr_match.hdr_src,
hdr->hdr_rndv.hdr_match.hdr_tag, hdr->hdr_rndv.hdr_match.hdr_seq,
hdr->hdr_rndv.hdr_msg_length);
break;
case MCA_PML_OB1_HDR_TYPE_RGET:
type = "RGET";
snprintf( header, 128, "ctx %5d src %d tag %d seq %d msg_length %" PRIu64
"seg_cnt %d hdr_des %" PRIu64,
hdr->hdr_rndv.hdr_match.hdr_ctx, hdr->hdr_rndv.hdr_match.hdr_src,
hdr->hdr_rndv.hdr_match.hdr_tag, hdr->hdr_rndv.hdr_match.hdr_seq,
hdr->hdr_rndv.hdr_msg_length,
hdr->hdr_rget.hdr_seg_cnt, hdr->hdr_rget.hdr_des.lval);
break;
case MCA_PML_OB1_HDR_TYPE_ACK:
type = "ACK";
snprintf( header, 128, "src_req %p dst_req %p offset %" PRIu64,
hdr->hdr_ack.hdr_src_req.pval, hdr->hdr_ack.hdr_dst_req.pval,
hdr->hdr_ack.hdr_send_offset);
break;
case MCA_PML_OB1_HDR_TYPE_FRAG:
type = "FRAG";
snprintf( header, 128, "offset %" PRIu64 " src_req %p dst_req %p",
hdr->hdr_frag.hdr_frag_offset,
hdr->hdr_frag.hdr_src_req.pval, hdr->hdr_frag.hdr_dst_req.pval);
break;
case MCA_PML_OB1_HDR_TYPE_PUT:
type = "PUT";
snprintf( header, 128, "seg_cnt %d dst_req %p src_des %p recv_req %p offset %" PRIu64 " [%p %" PRIu64 "]",
hdr->hdr_rdma.hdr_seg_cnt, hdr->hdr_rdma.hdr_req.pval, hdr->hdr_rdma.hdr_des.pval,
hdr->hdr_rdma.hdr_recv_req.pval, hdr->hdr_rdma.hdr_rdma_offset,
hdr->hdr_rdma.hdr_segs[0].seg_addr.pval, hdr->hdr_rdma.hdr_segs[0].seg_len);
break;
case MCA_PML_OB1_HDR_TYPE_FIN:
type = "FIN";
2012-09-26 13:44:46 +04:00
header[0] = '\0';
break;
default:
2012-09-26 13:44:46 +04:00
type = "UNKWN";
header[0] = '\0';
break;
}
opal_output(0,"hdr %s [%s] %s", type,
(hdr->hdr_common.hdr_flags & MCA_PML_OB1_HDR_FLAGS_NBO ? "nbo" : " "),
header);
}
static void mca_pml_ob1_dump_frag_list(opal_list_t* queue, bool is_req)
{
opal_list_item_t* item;
char cpeer[64], ctag[64];
for( item = opal_list_get_first(queue);
item != opal_list_get_end(queue);
item = opal_list_get_next(item) ) {
if( is_req ) {
mca_pml_base_request_t *req = &(((mca_pml_ob1_recv_request_t*)item)->req_recv.req_base);
if( OMPI_ANY_SOURCE == req->req_peer ) snprintf(cpeer, 64, "%s", "ANY_SOURCE");
else snprintf(cpeer, 64, "%d", req->req_peer);
if( OMPI_ANY_TAG == req->req_tag ) snprintf(ctag, 64, "%s", "ANY_TAG");
else snprintf(ctag, 64, "%d", req->req_tag);
opal_output(0, "req %p peer %s tag %s addr %p count %lu datatype %s [%p] [%s %s] req_seq %" PRIu64,
(void*) req, cpeer, ctag,
(void*) req->req_addr, req->req_count,
(0 != req->req_count ? req->req_datatype->name : "N/A"),
(void*) req->req_datatype,
(req->req_pml_complete ? "pml_complete" : ""),
(req->req_free_called ? "freed" : ""),
req->req_sequence);
} else {
mca_pml_ob1_recv_frag_t* frag = (mca_pml_ob1_recv_frag_t*)item;
mca_pml_ob1_dump_hdr( &frag->hdr );
}
}
}
int mca_pml_ob1_dump(struct ompi_communicator_t* comm, int verbose)
{
struct mca_pml_comm_t* pml_comm = comm->c_pml_comm;
int i;
/* TODO: don't forget to dump mca_pml_ob1.non_existing_communicator_pending */
opal_output(0, "Communicator %s [%p](%d) rank %d recv_seq %d num_procs %lu last_probed %lu\n",
comm->c_name, (void*) comm, comm->c_contextid, comm->c_my_rank,
pml_comm->recv_sequence, pml_comm->num_procs, pml_comm->last_probed);
if( opal_list_get_size(&pml_comm->wild_receives) ) {
opal_output(0, "expected MPI_ANY_SOURCE fragments\n");
mca_pml_ob1_dump_frag_list(&pml_comm->wild_receives, true);
}
/* iterate through all procs on communicator */
for( i = 0; i < (int)pml_comm->num_procs; i++ ) {
mca_pml_ob1_comm_proc_t* proc = &pml_comm->procs[i];
mca_bml_base_endpoint_t* ep = (mca_bml_base_endpoint_t*)proc->ompi_proc->proc_bml;
size_t n;
opal_output(0, "[Rank %d] expected_seq %d ompi_proc %p send_seq %d\n",
i, proc->expected_sequence, (void*) proc->ompi_proc,
proc->send_sequence);
/* dump all receive queues */
if( opal_list_get_size(&proc->specific_receives) ) {
opal_output(0, "expected specific receives\n");
mca_pml_ob1_dump_frag_list(&proc->specific_receives, true);
}
if( opal_list_get_size(&proc->frags_cant_match) ) {
opal_output(0, "out of sequence\n");
mca_pml_ob1_dump_frag_list(&proc->frags_cant_match, false);
}
if( opal_list_get_size(&proc->unexpected_frags) ) {
opal_output(0, "unexpected frag\n");
mca_pml_ob1_dump_frag_list(&proc->unexpected_frags, false);
}
/* dump all btls used for eager messages */
for( n = 0; n < ep->btl_eager.arr_size; n++ ) {
mca_bml_base_btl_t* bml_btl = &ep->btl_eager.bml_btls[n];
bml_btl->btl->btl_dump(bml_btl->btl, bml_btl->btl_endpoint, verbose);
}
}
return OMPI_SUCCESS;
}
static void mca_pml_ob1_fin_completion( mca_btl_base_module_t* btl,
struct mca_btl_base_endpoint_t* ep,
struct mca_btl_base_descriptor_t* des,
int status )
{
mca_bml_base_btl_t* bml_btl = (mca_bml_base_btl_t*) des->des_context;
/* check for pending requests */
MCA_PML_OB1_PROGRESS_PENDING(bml_btl);
}
/**
* Send an FIN to the peer. If we fail to send this ack (no more available
* fragments or the send failed) this function automatically add the FIN
* to the list of pending FIN, Which guarantee that the FIN will be sent
* later.
*/
int mca_pml_ob1_send_fin( ompi_proc_t* proc,
mca_bml_base_btl_t* bml_btl,
ompi_ptr_t hdr_des,
uint8_t order,
uint32_t status )
{
mca_btl_base_descriptor_t* fin;
mca_pml_ob1_fin_hdr_t* hdr;
int rc;
mca_bml_base_alloc(bml_btl, &fin, order, sizeof(mca_pml_ob1_fin_hdr_t),
MCA_BTL_DES_FLAGS_PRIORITY | MCA_BTL_DES_FLAGS_BTL_OWNERSHIP);
if(NULL == fin) {
MCA_PML_OB1_ADD_FIN_TO_PENDING(proc, hdr_des, bml_btl, order, status);
return OMPI_ERR_OUT_OF_RESOURCE;
}
fin->des_cbfunc = mca_pml_ob1_fin_completion;
fin->des_cbdata = NULL;
/* fill in header */
hdr = (mca_pml_ob1_fin_hdr_t*)fin->des_src->seg_addr.pval;
hdr->hdr_common.hdr_flags = 0;
hdr->hdr_common.hdr_type = MCA_PML_OB1_HDR_TYPE_FIN;
hdr->hdr_des = hdr_des;
hdr->hdr_fail = status;
ob1_hdr_hton(hdr, MCA_PML_OB1_HDR_TYPE_FIN, proc);
/* queue request */
rc = mca_bml_base_send( bml_btl,
fin,
MCA_PML_OB1_HDR_TYPE_FIN );
if( OPAL_LIKELY( rc >= 0 ) ) {
if( OPAL_LIKELY( 1 == rc ) ) {
MCA_PML_OB1_PROGRESS_PENDING(bml_btl);
}
return OMPI_SUCCESS;
}
mca_bml_base_free(bml_btl, fin);
MCA_PML_OB1_ADD_FIN_TO_PENDING(proc, hdr_des, bml_btl, order, status);
return OMPI_ERR_OUT_OF_RESOURCE;
}
void mca_pml_ob1_process_pending_packets(mca_bml_base_btl_t* bml_btl)
{
mca_pml_ob1_pckt_pending_t *pckt;
int32_t i, rc, s = (int32_t)opal_list_get_size(&mca_pml_ob1.pckt_pending);
for(i = 0; i < s; i++) {
mca_bml_base_btl_t *send_dst = NULL;
OPAL_THREAD_LOCK(&mca_pml_ob1.lock);
pckt = (mca_pml_ob1_pckt_pending_t*)
opal_list_remove_first(&mca_pml_ob1.pckt_pending);
OPAL_THREAD_UNLOCK(&mca_pml_ob1.lock);
if(NULL == pckt)
break;
if(pckt->bml_btl != NULL &&
pckt->bml_btl->btl == bml_btl->btl) {
send_dst = pckt->bml_btl;
} else {
send_dst = mca_bml_base_btl_array_find(
&pckt->proc->proc_bml->btl_eager, bml_btl->btl);
}
if(NULL == send_dst) {
OPAL_THREAD_LOCK(&mca_pml_ob1.lock);
opal_list_append(&mca_pml_ob1.pckt_pending,
(opal_list_item_t*)pckt);
OPAL_THREAD_UNLOCK(&mca_pml_ob1.lock);
continue;
}
switch(pckt->hdr.hdr_common.hdr_type) {
case MCA_PML_OB1_HDR_TYPE_ACK:
rc = mca_pml_ob1_recv_request_ack_send_btl(pckt->proc,
send_dst,
pckt->hdr.hdr_ack.hdr_src_req.lval,
pckt->hdr.hdr_ack.hdr_dst_req.pval,
pckt->hdr.hdr_ack.hdr_send_offset,
pckt->hdr.hdr_common.hdr_flags & MCA_PML_OB1_HDR_FLAGS_NORDMA);
if( OPAL_UNLIKELY(OMPI_ERR_OUT_OF_RESOURCE == rc) ) {
OPAL_THREAD_LOCK(&mca_pml_ob1.lock);
opal_list_append(&mca_pml_ob1.pckt_pending,
(opal_list_item_t*)pckt);
OPAL_THREAD_UNLOCK(&mca_pml_ob1.lock);
return;
}
break;
case MCA_PML_OB1_HDR_TYPE_FIN:
rc = mca_pml_ob1_send_fin(pckt->proc, send_dst,
pckt->hdr.hdr_fin.hdr_des,
pckt->order,
pckt->hdr.hdr_fin.hdr_fail);
if( OPAL_UNLIKELY(OMPI_ERR_OUT_OF_RESOURCE == rc) ) {
return;
}
break;
default:
opal_output(0, "[%s:%d] wrong header type\n",
__FILE__, __LINE__);
break;
}
/* We're done with this packet, return it back to the free list */
MCA_PML_OB1_PCKT_PENDING_RETURN(pckt);
}
}
void mca_pml_ob1_process_pending_rdma(void)
{
mca_pml_ob1_rdma_frag_t* frag;
int32_t i, rc, s = (int32_t)opal_list_get_size(&mca_pml_ob1.rdma_pending);
for(i = 0; i < s; i++) {
OPAL_THREAD_LOCK(&mca_pml_ob1.lock);
frag = (mca_pml_ob1_rdma_frag_t*)
opal_list_remove_first(&mca_pml_ob1.rdma_pending);
OPAL_THREAD_UNLOCK(&mca_pml_ob1.lock);
if(NULL == frag)
break;
frag->retries++;
if(frag->rdma_state == MCA_PML_OB1_RDMA_PUT) {
rc = mca_pml_ob1_send_request_put_frag(frag);
} else {
rc = mca_pml_ob1_recv_request_get_frag(frag);
}
if(OMPI_ERR_OUT_OF_RESOURCE == rc)
break;
}
}
void mca_pml_ob1_error_handler(
struct mca_btl_base_module_t* btl, int32_t flags,
ompi_proc_t* errproc, char* btlinfo ) {
ompi_rte_abort(-1, NULL);
}
#if OPAL_ENABLE_FT_CR == 0
int mca_pml_ob1_ft_event( int state ) {
return OMPI_SUCCESS;
}
#else
int mca_pml_ob1_ft_event( int state )
{
static bool first_continue_pass = false;
ompi_proc_t** procs = NULL;
size_t num_procs;
int ret, p;
ompi_rte_collective_t *coll, *modex;
coll = OBJ_NEW(ompi_rte_collective_t);
coll->id = ompi_process_info.peer_init_barrier;
if(OPAL_CRS_CHECKPOINT == state) {
if( opal_cr_timing_barrier_enabled ) {
OPAL_CR_SET_TIMER(OPAL_CR_TIMER_CRCPBR1);
ompi_rte_barrier(coll);
ORTE_WAIT_FOR_COMPLETION(coll->active);
}
OPAL_CR_SET_TIMER(OPAL_CR_TIMER_P2P0);
}
else if(OPAL_CRS_CONTINUE == state) {
first_continue_pass = !first_continue_pass;
if( !first_continue_pass ) {
if( opal_cr_timing_barrier_enabled ) {
OPAL_CR_SET_TIMER(OPAL_CR_TIMER_COREBR0);
ompi_rte_barrier(coll);
ORTE_WAIT_FOR_COMPLETION(coll->active);
}
OPAL_CR_SET_TIMER(OPAL_CR_TIMER_P2P2);
}
if( orte_cr_continue_like_restart && !first_continue_pass ) {
/*
* Get a list of processes
*/
procs = ompi_proc_all(&num_procs);
if(NULL == procs) {
ret = OMPI_ERR_OUT_OF_RESOURCE;
goto clean;
}
/*
* Refresh the proc structure, and publish our proc info in the modex.
* NOTE: Do *not* call ompi_proc_finalize as there are many places in
* the code that point to indv. procs in this strucutre. For our
* needs here we only need to fix up the modex, bml and pml
* references.
*/
if (OMPI_SUCCESS != (ret = ompi_proc_refresh())) {
opal_output(0,
"pml:ob1: ft_event(Restart): proc_refresh Failed %d",
ret);
for(p = 0; p < (int)num_procs; ++p) {
OBJ_RELEASE(procs[p]);
}
free (procs);
goto clean;
}
}
}
Fix a checkpoint/restart bug that causes a restarted application to occasionally throw a SIGSEGV or SIGPIPE due to invalid socket descriptors. The problem was caused by a bad ordering between the restart of the ORTE level tcp connections (in the OOB - out-of-band communication) and the Open MPI level tcp connections (BTLs). Before this commit ORTE would shutdown and restart the OOB completely before the OMPI level restarted its tcp connections. What would happen is that a socket descriptor used by the OMPI level on checkpoint was assigned to the ORTE level on restart. But the OMPI level had no knowledge that the socket descriptor it was previously using has been recycled so it closed it on restart. This caused the ORTE level to break as the newly created socket descriptor was closed without its knowledge. The fix is to have the OMPI level shutdown tcp connections, allow the ORTE level to restart, and then allow the OMPi level to restart its connections. This seems obvious, and I'm surprised that this bug has not cropped up sooner. I'm confident that this specific problem has been fixed with this commit. Thanks to Eric Roman and Tamer El Sayed for their help in identifying this problem, and patience while I was fixing it. * Add a new state {{{OPAL_CRS_RESTART_PRE}}}. This state identifies when we are on the down slope of the INC (finalize-like) which is useful when you want to close, but not reopen a component set for fear of interfering with a lower level. * Use this new state in OMPI level coordination. Here we want to make sure to play well with both the OMPI/BTL/TCP and ORTE/OOB/TCP components. * Update ft_event functions in PML and BML to handle the new restart state. * Add an additional flag to the error output in OOB/TCP so we can see what the socket descriptor was on failure as this can be helpful in debugging. This commit was SVN r18276.
2008-04-24 21:54:22 +04:00
else if(OPAL_CRS_RESTART_PRE == state ) {
/* Nothing here */
}
else if(OPAL_CRS_RESTART == state ) {
/*
* Get a list of processes
*/
procs = ompi_proc_all(&num_procs);
if(NULL == procs) {
ret = OMPI_ERR_OUT_OF_RESOURCE;
goto clean;
}
/*
* Clean out the modex information since it is invalid now.
* ompi_rte_purge_proc_attrs();
* This happens at the ORTE level, so doing it again here will cause
* some issues with socket caching.
*/
These changes were mostly captured in a prior RFC (except for #2 below) and are aimed specifically at improving startup performance and setting up the remaining modifications described in that RFC. The commit has been tested for C/R and Cray operations, and on Odin (SLURM, rsh) and RoadRunner (TM). I tried to update all environments, but obviously could not test them. I know that Windows needs some work, and have highlighted what is know to be needed in the odls process component. This represents a lot of work by Brian, Tim P, Josh, and myself, with much advice from Jeff and others. For posterity, I have appended a copy of the email describing the work that was done: As we have repeatedly noted, the modex operation in MPI_Init is the single greatest consumer of time during startup. To-date, we have executed that operation as an ORTE stage gate that held the process until a startup message containing all required modex (and OOB contact info - see #3 below) info could be sent to it. Each process would send its data to the HNP's registry, which assembled and sent the message when all processes had reported in. In addition, ORTE had taken responsibility for monitoring process status as it progressed through a series of "stage gates". The process reported its status at each gate, and ORTE would then send a "release" message once all procs had reported in. The incoming changes revamp these procedures in three ways: 1. eliminating the ORTE stage gate system and cleanly delineating responsibility between the OMPI and ORTE layers for MPI init/finalize. The modex stage gate (STG1) has been replaced by a collective operation in the modex itself that performs an allgather on the required modex info. The allgather is implemented using the orte_grpcomm framework since the BTL's are not active at that point. At the moment, the grpcomm framework only has a "basic" component analogous to OMPI's "basic" coll framework - I would recommend that the MPI team create additional, more advanced components to improve performance of this step. The other stage gates have been replaced by orte_grpcomm barrier functions. We tried to use MPI barriers instead (since the BTL's are active at that point), but - as we discussed on the telecon - these are not currently true barriers so the job would hang when we fell through while messages were still in process. Note that the grpcomm barrier doesn't actually resolve that problem, but Brian has pointed out that we are unlikely to ever see it violated. Again, you might want to spend a little time on an advanced barrier algorithm as the one in "basic" is very simplistic. Summarizing this change: ORTE no longer tracks process state nor has direct responsibility for synchronizing jobs. This is now done via collective operations within the MPI layer, albeit using ORTE collective communication services. I -strongly- urge the MPI team to implement advanced collective algorithms to improve the performance of this critical procedure. 2. reducing the volume of data exchanged during modex. Data in the modex consisted of the process name, the name of the node where that process is located (expressed as a string), plus a string representation of all contact info. The nodename was required in order for the modex to determine if the process was local or not - in addition, some people like to have it to print pretty error messages when a connection failed. The size of this data has been reduced in three ways: (a) reducing the size of the process name itself. The process name consisted of two 32-bit fields for the jobid and vpid. This is far larger than any current system, or system likely to exist in the near future, can support. Accordingly, the default size of these fields has been reduced to 16-bits, which means you can have 32k procs in each of 32k jobs. Since the daemons must have a vpid, and we require one daemon/node, this also restricts the default configuration to 32k nodes. To support any future "mega-clusters", a configuration option --enable-jumbo-apps has been added. This option increases the jobid and vpid field sizes to 32-bits. Someday, if necessary, someone can add yet another option to increase them to 64-bits, I suppose. (b) replacing the string nodename with an integer nodeid. Since we have one daemon/node, the nodeid corresponds to the local daemon's vpid. This replaces an often lengthy string with only 2 (or at most 4) bytes, a substantial reduction. (c) when the mca param requesting that nodenames be sent to support pretty error messages, a second mca param is now used to request FQDN - otherwise, the domain name is stripped (by default) from the message to save space. If someone wants to combine those into a single param somehow (perhaps with an argument?), they are welcome to do so - I didn't want to alter what people are already using. While these may seem like small savings, they actually amount to a significant impact when aggregated across the entire modex operation. Since every proc must receive the modex data regardless of the collective used to send it, just reducing the size of the process name removes nearly 400MBytes of communication from a 32k proc job (admittedly, much of this comm may occur in parallel). So it does add up pretty quickly. 3. routing RML messages to reduce connections. The default messaging system remains point-to-point - i.e., each proc opens a socket to every proc it communicates with and sends its messages directly. A new option uses the orteds as routers - i.e., each proc only opens a single socket to its local orted. All messages are sent from the proc to the orted, which forwards the message to the orted on the node where the intended recipient proc is located - that orted then forwards the message to its local proc (the recipient). This greatly reduces the connection storm we have encountered during startup. It also has the benefit of removing the sharing of every proc's OOB contact with every other proc. The orted routing tables are populated during launch since every orted gets a map of where every proc is being placed. Each proc, therefore, only needs to know the contact info for its local daemon, which is passed in via the environment when the proc is fork/exec'd by the daemon. This alone removes ~50 bytes/process of communication that was in the current STG1 startup message - so for our 32k proc job, this saves us roughly 32k*50 = 1.6MBytes sent to 32k procs = 51GBytes of messaging. Note that you can use the new routing method by specifying -mca routed tree - if you so desire. This mode will become the default at some point in the future. There are a few minor additional changes in the commit that I'll just note in passing: * propagation of command line mca params to the orteds - fixes ticket #1073. See note there for details. * requiring of "finalize" prior to "exit" for MPI procs - fixes ticket #1144. See note there for details. * cleanup of some stale header files This commit was SVN r16364.
2007-10-05 23:48:23 +04:00
/*
* Refresh the proc structure, and publish our proc info in the modex.
* NOTE: Do *not* call ompi_proc_finalize as there are many places in
* the code that point to indv. procs in this strucutre. For our
* needs here we only need to fix up the modex, bml and pml
* references.
These changes were mostly captured in a prior RFC (except for #2 below) and are aimed specifically at improving startup performance and setting up the remaining modifications described in that RFC. The commit has been tested for C/R and Cray operations, and on Odin (SLURM, rsh) and RoadRunner (TM). I tried to update all environments, but obviously could not test them. I know that Windows needs some work, and have highlighted what is know to be needed in the odls process component. This represents a lot of work by Brian, Tim P, Josh, and myself, with much advice from Jeff and others. For posterity, I have appended a copy of the email describing the work that was done: As we have repeatedly noted, the modex operation in MPI_Init is the single greatest consumer of time during startup. To-date, we have executed that operation as an ORTE stage gate that held the process until a startup message containing all required modex (and OOB contact info - see #3 below) info could be sent to it. Each process would send its data to the HNP's registry, which assembled and sent the message when all processes had reported in. In addition, ORTE had taken responsibility for monitoring process status as it progressed through a series of "stage gates". The process reported its status at each gate, and ORTE would then send a "release" message once all procs had reported in. The incoming changes revamp these procedures in three ways: 1. eliminating the ORTE stage gate system and cleanly delineating responsibility between the OMPI and ORTE layers for MPI init/finalize. The modex stage gate (STG1) has been replaced by a collective operation in the modex itself that performs an allgather on the required modex info. The allgather is implemented using the orte_grpcomm framework since the BTL's are not active at that point. At the moment, the grpcomm framework only has a "basic" component analogous to OMPI's "basic" coll framework - I would recommend that the MPI team create additional, more advanced components to improve performance of this step. The other stage gates have been replaced by orte_grpcomm barrier functions. We tried to use MPI barriers instead (since the BTL's are active at that point), but - as we discussed on the telecon - these are not currently true barriers so the job would hang when we fell through while messages were still in process. Note that the grpcomm barrier doesn't actually resolve that problem, but Brian has pointed out that we are unlikely to ever see it violated. Again, you might want to spend a little time on an advanced barrier algorithm as the one in "basic" is very simplistic. Summarizing this change: ORTE no longer tracks process state nor has direct responsibility for synchronizing jobs. This is now done via collective operations within the MPI layer, albeit using ORTE collective communication services. I -strongly- urge the MPI team to implement advanced collective algorithms to improve the performance of this critical procedure. 2. reducing the volume of data exchanged during modex. Data in the modex consisted of the process name, the name of the node where that process is located (expressed as a string), plus a string representation of all contact info. The nodename was required in order for the modex to determine if the process was local or not - in addition, some people like to have it to print pretty error messages when a connection failed. The size of this data has been reduced in three ways: (a) reducing the size of the process name itself. The process name consisted of two 32-bit fields for the jobid and vpid. This is far larger than any current system, or system likely to exist in the near future, can support. Accordingly, the default size of these fields has been reduced to 16-bits, which means you can have 32k procs in each of 32k jobs. Since the daemons must have a vpid, and we require one daemon/node, this also restricts the default configuration to 32k nodes. To support any future "mega-clusters", a configuration option --enable-jumbo-apps has been added. This option increases the jobid and vpid field sizes to 32-bits. Someday, if necessary, someone can add yet another option to increase them to 64-bits, I suppose. (b) replacing the string nodename with an integer nodeid. Since we have one daemon/node, the nodeid corresponds to the local daemon's vpid. This replaces an often lengthy string with only 2 (or at most 4) bytes, a substantial reduction. (c) when the mca param requesting that nodenames be sent to support pretty error messages, a second mca param is now used to request FQDN - otherwise, the domain name is stripped (by default) from the message to save space. If someone wants to combine those into a single param somehow (perhaps with an argument?), they are welcome to do so - I didn't want to alter what people are already using. While these may seem like small savings, they actually amount to a significant impact when aggregated across the entire modex operation. Since every proc must receive the modex data regardless of the collective used to send it, just reducing the size of the process name removes nearly 400MBytes of communication from a 32k proc job (admittedly, much of this comm may occur in parallel). So it does add up pretty quickly. 3. routing RML messages to reduce connections. The default messaging system remains point-to-point - i.e., each proc opens a socket to every proc it communicates with and sends its messages directly. A new option uses the orteds as routers - i.e., each proc only opens a single socket to its local orted. All messages are sent from the proc to the orted, which forwards the message to the orted on the node where the intended recipient proc is located - that orted then forwards the message to its local proc (the recipient). This greatly reduces the connection storm we have encountered during startup. It also has the benefit of removing the sharing of every proc's OOB contact with every other proc. The orted routing tables are populated during launch since every orted gets a map of where every proc is being placed. Each proc, therefore, only needs to know the contact info for its local daemon, which is passed in via the environment when the proc is fork/exec'd by the daemon. This alone removes ~50 bytes/process of communication that was in the current STG1 startup message - so for our 32k proc job, this saves us roughly 32k*50 = 1.6MBytes sent to 32k procs = 51GBytes of messaging. Note that you can use the new routing method by specifying -mca routed tree - if you so desire. This mode will become the default at some point in the future. There are a few minor additional changes in the commit that I'll just note in passing: * propagation of command line mca params to the orteds - fixes ticket #1073. See note there for details. * requiring of "finalize" prior to "exit" for MPI procs - fixes ticket #1144. See note there for details. * cleanup of some stale header files This commit was SVN r16364.
2007-10-05 23:48:23 +04:00
*/
if (OMPI_SUCCESS != (ret = ompi_proc_refresh())) {
opal_output(0,
"pml:ob1: ft_event(Restart): proc_refresh Failed %d",
These changes were mostly captured in a prior RFC (except for #2 below) and are aimed specifically at improving startup performance and setting up the remaining modifications described in that RFC. The commit has been tested for C/R and Cray operations, and on Odin (SLURM, rsh) and RoadRunner (TM). I tried to update all environments, but obviously could not test them. I know that Windows needs some work, and have highlighted what is know to be needed in the odls process component. This represents a lot of work by Brian, Tim P, Josh, and myself, with much advice from Jeff and others. For posterity, I have appended a copy of the email describing the work that was done: As we have repeatedly noted, the modex operation in MPI_Init is the single greatest consumer of time during startup. To-date, we have executed that operation as an ORTE stage gate that held the process until a startup message containing all required modex (and OOB contact info - see #3 below) info could be sent to it. Each process would send its data to the HNP's registry, which assembled and sent the message when all processes had reported in. In addition, ORTE had taken responsibility for monitoring process status as it progressed through a series of "stage gates". The process reported its status at each gate, and ORTE would then send a "release" message once all procs had reported in. The incoming changes revamp these procedures in three ways: 1. eliminating the ORTE stage gate system and cleanly delineating responsibility between the OMPI and ORTE layers for MPI init/finalize. The modex stage gate (STG1) has been replaced by a collective operation in the modex itself that performs an allgather on the required modex info. The allgather is implemented using the orte_grpcomm framework since the BTL's are not active at that point. At the moment, the grpcomm framework only has a "basic" component analogous to OMPI's "basic" coll framework - I would recommend that the MPI team create additional, more advanced components to improve performance of this step. The other stage gates have been replaced by orte_grpcomm barrier functions. We tried to use MPI barriers instead (since the BTL's are active at that point), but - as we discussed on the telecon - these are not currently true barriers so the job would hang when we fell through while messages were still in process. Note that the grpcomm barrier doesn't actually resolve that problem, but Brian has pointed out that we are unlikely to ever see it violated. Again, you might want to spend a little time on an advanced barrier algorithm as the one in "basic" is very simplistic. Summarizing this change: ORTE no longer tracks process state nor has direct responsibility for synchronizing jobs. This is now done via collective operations within the MPI layer, albeit using ORTE collective communication services. I -strongly- urge the MPI team to implement advanced collective algorithms to improve the performance of this critical procedure. 2. reducing the volume of data exchanged during modex. Data in the modex consisted of the process name, the name of the node where that process is located (expressed as a string), plus a string representation of all contact info. The nodename was required in order for the modex to determine if the process was local or not - in addition, some people like to have it to print pretty error messages when a connection failed. The size of this data has been reduced in three ways: (a) reducing the size of the process name itself. The process name consisted of two 32-bit fields for the jobid and vpid. This is far larger than any current system, or system likely to exist in the near future, can support. Accordingly, the default size of these fields has been reduced to 16-bits, which means you can have 32k procs in each of 32k jobs. Since the daemons must have a vpid, and we require one daemon/node, this also restricts the default configuration to 32k nodes. To support any future "mega-clusters", a configuration option --enable-jumbo-apps has been added. This option increases the jobid and vpid field sizes to 32-bits. Someday, if necessary, someone can add yet another option to increase them to 64-bits, I suppose. (b) replacing the string nodename with an integer nodeid. Since we have one daemon/node, the nodeid corresponds to the local daemon's vpid. This replaces an often lengthy string with only 2 (or at most 4) bytes, a substantial reduction. (c) when the mca param requesting that nodenames be sent to support pretty error messages, a second mca param is now used to request FQDN - otherwise, the domain name is stripped (by default) from the message to save space. If someone wants to combine those into a single param somehow (perhaps with an argument?), they are welcome to do so - I didn't want to alter what people are already using. While these may seem like small savings, they actually amount to a significant impact when aggregated across the entire modex operation. Since every proc must receive the modex data regardless of the collective used to send it, just reducing the size of the process name removes nearly 400MBytes of communication from a 32k proc job (admittedly, much of this comm may occur in parallel). So it does add up pretty quickly. 3. routing RML messages to reduce connections. The default messaging system remains point-to-point - i.e., each proc opens a socket to every proc it communicates with and sends its messages directly. A new option uses the orteds as routers - i.e., each proc only opens a single socket to its local orted. All messages are sent from the proc to the orted, which forwards the message to the orted on the node where the intended recipient proc is located - that orted then forwards the message to its local proc (the recipient). This greatly reduces the connection storm we have encountered during startup. It also has the benefit of removing the sharing of every proc's OOB contact with every other proc. The orted routing tables are populated during launch since every orted gets a map of where every proc is being placed. Each proc, therefore, only needs to know the contact info for its local daemon, which is passed in via the environment when the proc is fork/exec'd by the daemon. This alone removes ~50 bytes/process of communication that was in the current STG1 startup message - so for our 32k proc job, this saves us roughly 32k*50 = 1.6MBytes sent to 32k procs = 51GBytes of messaging. Note that you can use the new routing method by specifying -mca routed tree - if you so desire. This mode will become the default at some point in the future. There are a few minor additional changes in the commit that I'll just note in passing: * propagation of command line mca params to the orteds - fixes ticket #1073. See note there for details. * requiring of "finalize" prior to "exit" for MPI procs - fixes ticket #1144. See note there for details. * cleanup of some stale header files This commit was SVN r16364.
2007-10-05 23:48:23 +04:00
ret);
for(p = 0; p < (int)num_procs; ++p) {
OBJ_RELEASE(procs[p]);
}
free (procs);
goto clean;
These changes were mostly captured in a prior RFC (except for #2 below) and are aimed specifically at improving startup performance and setting up the remaining modifications described in that RFC. The commit has been tested for C/R and Cray operations, and on Odin (SLURM, rsh) and RoadRunner (TM). I tried to update all environments, but obviously could not test them. I know that Windows needs some work, and have highlighted what is know to be needed in the odls process component. This represents a lot of work by Brian, Tim P, Josh, and myself, with much advice from Jeff and others. For posterity, I have appended a copy of the email describing the work that was done: As we have repeatedly noted, the modex operation in MPI_Init is the single greatest consumer of time during startup. To-date, we have executed that operation as an ORTE stage gate that held the process until a startup message containing all required modex (and OOB contact info - see #3 below) info could be sent to it. Each process would send its data to the HNP's registry, which assembled and sent the message when all processes had reported in. In addition, ORTE had taken responsibility for monitoring process status as it progressed through a series of "stage gates". The process reported its status at each gate, and ORTE would then send a "release" message once all procs had reported in. The incoming changes revamp these procedures in three ways: 1. eliminating the ORTE stage gate system and cleanly delineating responsibility between the OMPI and ORTE layers for MPI init/finalize. The modex stage gate (STG1) has been replaced by a collective operation in the modex itself that performs an allgather on the required modex info. The allgather is implemented using the orte_grpcomm framework since the BTL's are not active at that point. At the moment, the grpcomm framework only has a "basic" component analogous to OMPI's "basic" coll framework - I would recommend that the MPI team create additional, more advanced components to improve performance of this step. The other stage gates have been replaced by orte_grpcomm barrier functions. We tried to use MPI barriers instead (since the BTL's are active at that point), but - as we discussed on the telecon - these are not currently true barriers so the job would hang when we fell through while messages were still in process. Note that the grpcomm barrier doesn't actually resolve that problem, but Brian has pointed out that we are unlikely to ever see it violated. Again, you might want to spend a little time on an advanced barrier algorithm as the one in "basic" is very simplistic. Summarizing this change: ORTE no longer tracks process state nor has direct responsibility for synchronizing jobs. This is now done via collective operations within the MPI layer, albeit using ORTE collective communication services. I -strongly- urge the MPI team to implement advanced collective algorithms to improve the performance of this critical procedure. 2. reducing the volume of data exchanged during modex. Data in the modex consisted of the process name, the name of the node where that process is located (expressed as a string), plus a string representation of all contact info. The nodename was required in order for the modex to determine if the process was local or not - in addition, some people like to have it to print pretty error messages when a connection failed. The size of this data has been reduced in three ways: (a) reducing the size of the process name itself. The process name consisted of two 32-bit fields for the jobid and vpid. This is far larger than any current system, or system likely to exist in the near future, can support. Accordingly, the default size of these fields has been reduced to 16-bits, which means you can have 32k procs in each of 32k jobs. Since the daemons must have a vpid, and we require one daemon/node, this also restricts the default configuration to 32k nodes. To support any future "mega-clusters", a configuration option --enable-jumbo-apps has been added. This option increases the jobid and vpid field sizes to 32-bits. Someday, if necessary, someone can add yet another option to increase them to 64-bits, I suppose. (b) replacing the string nodename with an integer nodeid. Since we have one daemon/node, the nodeid corresponds to the local daemon's vpid. This replaces an often lengthy string with only 2 (or at most 4) bytes, a substantial reduction. (c) when the mca param requesting that nodenames be sent to support pretty error messages, a second mca param is now used to request FQDN - otherwise, the domain name is stripped (by default) from the message to save space. If someone wants to combine those into a single param somehow (perhaps with an argument?), they are welcome to do so - I didn't want to alter what people are already using. While these may seem like small savings, they actually amount to a significant impact when aggregated across the entire modex operation. Since every proc must receive the modex data regardless of the collective used to send it, just reducing the size of the process name removes nearly 400MBytes of communication from a 32k proc job (admittedly, much of this comm may occur in parallel). So it does add up pretty quickly. 3. routing RML messages to reduce connections. The default messaging system remains point-to-point - i.e., each proc opens a socket to every proc it communicates with and sends its messages directly. A new option uses the orteds as routers - i.e., each proc only opens a single socket to its local orted. All messages are sent from the proc to the orted, which forwards the message to the orted on the node where the intended recipient proc is located - that orted then forwards the message to its local proc (the recipient). This greatly reduces the connection storm we have encountered during startup. It also has the benefit of removing the sharing of every proc's OOB contact with every other proc. The orted routing tables are populated during launch since every orted gets a map of where every proc is being placed. Each proc, therefore, only needs to know the contact info for its local daemon, which is passed in via the environment when the proc is fork/exec'd by the daemon. This alone removes ~50 bytes/process of communication that was in the current STG1 startup message - so for our 32k proc job, this saves us roughly 32k*50 = 1.6MBytes sent to 32k procs = 51GBytes of messaging. Note that you can use the new routing method by specifying -mca routed tree - if you so desire. This mode will become the default at some point in the future. There are a few minor additional changes in the commit that I'll just note in passing: * propagation of command line mca params to the orteds - fixes ticket #1073. See note there for details. * requiring of "finalize" prior to "exit" for MPI procs - fixes ticket #1144. See note there for details. * cleanup of some stale header files This commit was SVN r16364.
2007-10-05 23:48:23 +04:00
}
}
else if(OPAL_CRS_TERM == state ) {
;
}
else {
;
}
/* Call the BML
* BML is expected to call ft_event in
* - BTL(s)
* - MPool(s)
*/
if( OMPI_SUCCESS != (ret = mca_bml.bml_ft_event(state))) {
opal_output(0, "pml:base: ft_event: BML ft_event function failed: %d\n",
ret);
}
if(OPAL_CRS_CHECKPOINT == state) {
OPAL_CR_SET_TIMER(OPAL_CR_TIMER_P2P1);
if( opal_cr_timing_barrier_enabled ) {
OPAL_CR_SET_TIMER(OPAL_CR_TIMER_P2PBR0);
/* JJH Cannot barrier here due to progress engine -- ompi_rte_barrier();*/
}
}
else if(OPAL_CRS_CONTINUE == state) {
if( !first_continue_pass ) {
if( opal_cr_timing_barrier_enabled ) {
OPAL_CR_SET_TIMER(OPAL_CR_TIMER_P2PBR1);
ompi_rte_barrier(coll);
ORTE_WAIT_FOR_COMPLETION(coll->active);
}
OPAL_CR_SET_TIMER(OPAL_CR_TIMER_P2P3);
}
if( orte_cr_continue_like_restart && !first_continue_pass ) {
/*
* Exchange the modex information once again.
* BTLs will have republished their modex information.
*/
modex = OBJ_NEW(ompi_rte_collective_t);
modex->id = ompi_process_info.peer_modex;
if (OMPI_SUCCESS != (ret = orte_grpcomm.modex(modex))) {
opal_output(0,
"pml:ob1: ft_event(Restart): Failed orte_grpcomm.modex() = %d",
ret);
OBJ_RELEASE(modex);
goto clean;
}
ORTE_WAIT_FOR_COMPLETION(modex->active);
OBJ_RELEASE(modex);
/*
* Startup the PML stack now that the modex is running again
* Add the new procs (BTLs redo modex recv's)
*/
if( OMPI_SUCCESS != (ret = mca_pml_ob1_add_procs(procs, num_procs) ) ) {
opal_output(0, "pml:ob1: ft_event(Restart): Failed in add_procs (%d)", ret);
goto clean;
}
/* Is this barrier necessary ? JJH */
if (OMPI_SUCCESS != (ret = ompi_rte_barrier(coll))) {
opal_output(0, "pml:ob1: ft_event(Restart): Failed in ompi_rte_barrier (%d)", ret);
goto clean;
}
ORTE_WAIT_FOR_COMPLETION(coll->active);
if( NULL != procs ) {
for(p = 0; p < (int)num_procs; ++p) {
OBJ_RELEASE(procs[p]);
}
free(procs);
procs = NULL;
}
}
if( !first_continue_pass ) {
if( opal_cr_timing_barrier_enabled ) {
OPAL_CR_SET_TIMER(OPAL_CR_TIMER_P2PBR2);
ompi_rte_barrier(coll);
ORTE_WAIT_FOR_COMPLETION(coll->active);
}
OPAL_CR_SET_TIMER(OPAL_CR_TIMER_CRCP1);
}
}
Fix a checkpoint/restart bug that causes a restarted application to occasionally throw a SIGSEGV or SIGPIPE due to invalid socket descriptors. The problem was caused by a bad ordering between the restart of the ORTE level tcp connections (in the OOB - out-of-band communication) and the Open MPI level tcp connections (BTLs). Before this commit ORTE would shutdown and restart the OOB completely before the OMPI level restarted its tcp connections. What would happen is that a socket descriptor used by the OMPI level on checkpoint was assigned to the ORTE level on restart. But the OMPI level had no knowledge that the socket descriptor it was previously using has been recycled so it closed it on restart. This caused the ORTE level to break as the newly created socket descriptor was closed without its knowledge. The fix is to have the OMPI level shutdown tcp connections, allow the ORTE level to restart, and then allow the OMPi level to restart its connections. This seems obvious, and I'm surprised that this bug has not cropped up sooner. I'm confident that this specific problem has been fixed with this commit. Thanks to Eric Roman and Tamer El Sayed for their help in identifying this problem, and patience while I was fixing it. * Add a new state {{{OPAL_CRS_RESTART_PRE}}}. This state identifies when we are on the down slope of the INC (finalize-like) which is useful when you want to close, but not reopen a component set for fear of interfering with a lower level. * Use this new state in OMPI level coordination. Here we want to make sure to play well with both the OMPI/BTL/TCP and ORTE/OOB/TCP components. * Update ft_event functions in PML and BML to handle the new restart state. * Add an additional flag to the error output in OOB/TCP so we can see what the socket descriptor was on failure as this can be helpful in debugging. This commit was SVN r18276.
2008-04-24 21:54:22 +04:00
else if(OPAL_CRS_RESTART_PRE == state ) {
/* Nothing here */
}
else if(OPAL_CRS_RESTART == state ) {
/*
* Exchange the modex information once again.
* BTLs will have republished their modex information.
These changes were mostly captured in a prior RFC (except for #2 below) and are aimed specifically at improving startup performance and setting up the remaining modifications described in that RFC. The commit has been tested for C/R and Cray operations, and on Odin (SLURM, rsh) and RoadRunner (TM). I tried to update all environments, but obviously could not test them. I know that Windows needs some work, and have highlighted what is know to be needed in the odls process component. This represents a lot of work by Brian, Tim P, Josh, and myself, with much advice from Jeff and others. For posterity, I have appended a copy of the email describing the work that was done: As we have repeatedly noted, the modex operation in MPI_Init is the single greatest consumer of time during startup. To-date, we have executed that operation as an ORTE stage gate that held the process until a startup message containing all required modex (and OOB contact info - see #3 below) info could be sent to it. Each process would send its data to the HNP's registry, which assembled and sent the message when all processes had reported in. In addition, ORTE had taken responsibility for monitoring process status as it progressed through a series of "stage gates". The process reported its status at each gate, and ORTE would then send a "release" message once all procs had reported in. The incoming changes revamp these procedures in three ways: 1. eliminating the ORTE stage gate system and cleanly delineating responsibility between the OMPI and ORTE layers for MPI init/finalize. The modex stage gate (STG1) has been replaced by a collective operation in the modex itself that performs an allgather on the required modex info. The allgather is implemented using the orte_grpcomm framework since the BTL's are not active at that point. At the moment, the grpcomm framework only has a "basic" component analogous to OMPI's "basic" coll framework - I would recommend that the MPI team create additional, more advanced components to improve performance of this step. The other stage gates have been replaced by orte_grpcomm barrier functions. We tried to use MPI barriers instead (since the BTL's are active at that point), but - as we discussed on the telecon - these are not currently true barriers so the job would hang when we fell through while messages were still in process. Note that the grpcomm barrier doesn't actually resolve that problem, but Brian has pointed out that we are unlikely to ever see it violated. Again, you might want to spend a little time on an advanced barrier algorithm as the one in "basic" is very simplistic. Summarizing this change: ORTE no longer tracks process state nor has direct responsibility for synchronizing jobs. This is now done via collective operations within the MPI layer, albeit using ORTE collective communication services. I -strongly- urge the MPI team to implement advanced collective algorithms to improve the performance of this critical procedure. 2. reducing the volume of data exchanged during modex. Data in the modex consisted of the process name, the name of the node where that process is located (expressed as a string), plus a string representation of all contact info. The nodename was required in order for the modex to determine if the process was local or not - in addition, some people like to have it to print pretty error messages when a connection failed. The size of this data has been reduced in three ways: (a) reducing the size of the process name itself. The process name consisted of two 32-bit fields for the jobid and vpid. This is far larger than any current system, or system likely to exist in the near future, can support. Accordingly, the default size of these fields has been reduced to 16-bits, which means you can have 32k procs in each of 32k jobs. Since the daemons must have a vpid, and we require one daemon/node, this also restricts the default configuration to 32k nodes. To support any future "mega-clusters", a configuration option --enable-jumbo-apps has been added. This option increases the jobid and vpid field sizes to 32-bits. Someday, if necessary, someone can add yet another option to increase them to 64-bits, I suppose. (b) replacing the string nodename with an integer nodeid. Since we have one daemon/node, the nodeid corresponds to the local daemon's vpid. This replaces an often lengthy string with only 2 (or at most 4) bytes, a substantial reduction. (c) when the mca param requesting that nodenames be sent to support pretty error messages, a second mca param is now used to request FQDN - otherwise, the domain name is stripped (by default) from the message to save space. If someone wants to combine those into a single param somehow (perhaps with an argument?), they are welcome to do so - I didn't want to alter what people are already using. While these may seem like small savings, they actually amount to a significant impact when aggregated across the entire modex operation. Since every proc must receive the modex data regardless of the collective used to send it, just reducing the size of the process name removes nearly 400MBytes of communication from a 32k proc job (admittedly, much of this comm may occur in parallel). So it does add up pretty quickly. 3. routing RML messages to reduce connections. The default messaging system remains point-to-point - i.e., each proc opens a socket to every proc it communicates with and sends its messages directly. A new option uses the orteds as routers - i.e., each proc only opens a single socket to its local orted. All messages are sent from the proc to the orted, which forwards the message to the orted on the node where the intended recipient proc is located - that orted then forwards the message to its local proc (the recipient). This greatly reduces the connection storm we have encountered during startup. It also has the benefit of removing the sharing of every proc's OOB contact with every other proc. The orted routing tables are populated during launch since every orted gets a map of where every proc is being placed. Each proc, therefore, only needs to know the contact info for its local daemon, which is passed in via the environment when the proc is fork/exec'd by the daemon. This alone removes ~50 bytes/process of communication that was in the current STG1 startup message - so for our 32k proc job, this saves us roughly 32k*50 = 1.6MBytes sent to 32k procs = 51GBytes of messaging. Note that you can use the new routing method by specifying -mca routed tree - if you so desire. This mode will become the default at some point in the future. There are a few minor additional changes in the commit that I'll just note in passing: * propagation of command line mca params to the orteds - fixes ticket #1073. See note there for details. * requiring of "finalize" prior to "exit" for MPI procs - fixes ticket #1144. See note there for details. * cleanup of some stale header files This commit was SVN r16364.
2007-10-05 23:48:23 +04:00
*/
modex = OBJ_NEW(ompi_rte_collective_t);
modex->id = ompi_process_info.peer_modex;
if (OMPI_SUCCESS != (ret = orte_grpcomm.modex(modex))) {
opal_output(0,
"pml:ob1: ft_event(Restart): Failed orte_grpcomm.modex() = %d",
ret);
OBJ_RELEASE(modex);
goto clean;
}
ORTE_WAIT_FOR_COMPLETION(modex->active);
OBJ_RELEASE(modex);
/*
These changes were mostly captured in a prior RFC (except for #2 below) and are aimed specifically at improving startup performance and setting up the remaining modifications described in that RFC. The commit has been tested for C/R and Cray operations, and on Odin (SLURM, rsh) and RoadRunner (TM). I tried to update all environments, but obviously could not test them. I know that Windows needs some work, and have highlighted what is know to be needed in the odls process component. This represents a lot of work by Brian, Tim P, Josh, and myself, with much advice from Jeff and others. For posterity, I have appended a copy of the email describing the work that was done: As we have repeatedly noted, the modex operation in MPI_Init is the single greatest consumer of time during startup. To-date, we have executed that operation as an ORTE stage gate that held the process until a startup message containing all required modex (and OOB contact info - see #3 below) info could be sent to it. Each process would send its data to the HNP's registry, which assembled and sent the message when all processes had reported in. In addition, ORTE had taken responsibility for monitoring process status as it progressed through a series of "stage gates". The process reported its status at each gate, and ORTE would then send a "release" message once all procs had reported in. The incoming changes revamp these procedures in three ways: 1. eliminating the ORTE stage gate system and cleanly delineating responsibility between the OMPI and ORTE layers for MPI init/finalize. The modex stage gate (STG1) has been replaced by a collective operation in the modex itself that performs an allgather on the required modex info. The allgather is implemented using the orte_grpcomm framework since the BTL's are not active at that point. At the moment, the grpcomm framework only has a "basic" component analogous to OMPI's "basic" coll framework - I would recommend that the MPI team create additional, more advanced components to improve performance of this step. The other stage gates have been replaced by orte_grpcomm barrier functions. We tried to use MPI barriers instead (since the BTL's are active at that point), but - as we discussed on the telecon - these are not currently true barriers so the job would hang when we fell through while messages were still in process. Note that the grpcomm barrier doesn't actually resolve that problem, but Brian has pointed out that we are unlikely to ever see it violated. Again, you might want to spend a little time on an advanced barrier algorithm as the one in "basic" is very simplistic. Summarizing this change: ORTE no longer tracks process state nor has direct responsibility for synchronizing jobs. This is now done via collective operations within the MPI layer, albeit using ORTE collective communication services. I -strongly- urge the MPI team to implement advanced collective algorithms to improve the performance of this critical procedure. 2. reducing the volume of data exchanged during modex. Data in the modex consisted of the process name, the name of the node where that process is located (expressed as a string), plus a string representation of all contact info. The nodename was required in order for the modex to determine if the process was local or not - in addition, some people like to have it to print pretty error messages when a connection failed. The size of this data has been reduced in three ways: (a) reducing the size of the process name itself. The process name consisted of two 32-bit fields for the jobid and vpid. This is far larger than any current system, or system likely to exist in the near future, can support. Accordingly, the default size of these fields has been reduced to 16-bits, which means you can have 32k procs in each of 32k jobs. Since the daemons must have a vpid, and we require one daemon/node, this also restricts the default configuration to 32k nodes. To support any future "mega-clusters", a configuration option --enable-jumbo-apps has been added. This option increases the jobid and vpid field sizes to 32-bits. Someday, if necessary, someone can add yet another option to increase them to 64-bits, I suppose. (b) replacing the string nodename with an integer nodeid. Since we have one daemon/node, the nodeid corresponds to the local daemon's vpid. This replaces an often lengthy string with only 2 (or at most 4) bytes, a substantial reduction. (c) when the mca param requesting that nodenames be sent to support pretty error messages, a second mca param is now used to request FQDN - otherwise, the domain name is stripped (by default) from the message to save space. If someone wants to combine those into a single param somehow (perhaps with an argument?), they are welcome to do so - I didn't want to alter what people are already using. While these may seem like small savings, they actually amount to a significant impact when aggregated across the entire modex operation. Since every proc must receive the modex data regardless of the collective used to send it, just reducing the size of the process name removes nearly 400MBytes of communication from a 32k proc job (admittedly, much of this comm may occur in parallel). So it does add up pretty quickly. 3. routing RML messages to reduce connections. The default messaging system remains point-to-point - i.e., each proc opens a socket to every proc it communicates with and sends its messages directly. A new option uses the orteds as routers - i.e., each proc only opens a single socket to its local orted. All messages are sent from the proc to the orted, which forwards the message to the orted on the node where the intended recipient proc is located - that orted then forwards the message to its local proc (the recipient). This greatly reduces the connection storm we have encountered during startup. It also has the benefit of removing the sharing of every proc's OOB contact with every other proc. The orted routing tables are populated during launch since every orted gets a map of where every proc is being placed. Each proc, therefore, only needs to know the contact info for its local daemon, which is passed in via the environment when the proc is fork/exec'd by the daemon. This alone removes ~50 bytes/process of communication that was in the current STG1 startup message - so for our 32k proc job, this saves us roughly 32k*50 = 1.6MBytes sent to 32k procs = 51GBytes of messaging. Note that you can use the new routing method by specifying -mca routed tree - if you so desire. This mode will become the default at some point in the future. There are a few minor additional changes in the commit that I'll just note in passing: * propagation of command line mca params to the orteds - fixes ticket #1073. See note there for details. * requiring of "finalize" prior to "exit" for MPI procs - fixes ticket #1144. See note there for details. * cleanup of some stale header files This commit was SVN r16364.
2007-10-05 23:48:23 +04:00
* Startup the PML stack now that the modex is running again
* Add the new procs (BTLs redo modex recv's)
*/
These changes were mostly captured in a prior RFC (except for #2 below) and are aimed specifically at improving startup performance and setting up the remaining modifications described in that RFC. The commit has been tested for C/R and Cray operations, and on Odin (SLURM, rsh) and RoadRunner (TM). I tried to update all environments, but obviously could not test them. I know that Windows needs some work, and have highlighted what is know to be needed in the odls process component. This represents a lot of work by Brian, Tim P, Josh, and myself, with much advice from Jeff and others. For posterity, I have appended a copy of the email describing the work that was done: As we have repeatedly noted, the modex operation in MPI_Init is the single greatest consumer of time during startup. To-date, we have executed that operation as an ORTE stage gate that held the process until a startup message containing all required modex (and OOB contact info - see #3 below) info could be sent to it. Each process would send its data to the HNP's registry, which assembled and sent the message when all processes had reported in. In addition, ORTE had taken responsibility for monitoring process status as it progressed through a series of "stage gates". The process reported its status at each gate, and ORTE would then send a "release" message once all procs had reported in. The incoming changes revamp these procedures in three ways: 1. eliminating the ORTE stage gate system and cleanly delineating responsibility between the OMPI and ORTE layers for MPI init/finalize. The modex stage gate (STG1) has been replaced by a collective operation in the modex itself that performs an allgather on the required modex info. The allgather is implemented using the orte_grpcomm framework since the BTL's are not active at that point. At the moment, the grpcomm framework only has a "basic" component analogous to OMPI's "basic" coll framework - I would recommend that the MPI team create additional, more advanced components to improve performance of this step. The other stage gates have been replaced by orte_grpcomm barrier functions. We tried to use MPI barriers instead (since the BTL's are active at that point), but - as we discussed on the telecon - these are not currently true barriers so the job would hang when we fell through while messages were still in process. Note that the grpcomm barrier doesn't actually resolve that problem, but Brian has pointed out that we are unlikely to ever see it violated. Again, you might want to spend a little time on an advanced barrier algorithm as the one in "basic" is very simplistic. Summarizing this change: ORTE no longer tracks process state nor has direct responsibility for synchronizing jobs. This is now done via collective operations within the MPI layer, albeit using ORTE collective communication services. I -strongly- urge the MPI team to implement advanced collective algorithms to improve the performance of this critical procedure. 2. reducing the volume of data exchanged during modex. Data in the modex consisted of the process name, the name of the node where that process is located (expressed as a string), plus a string representation of all contact info. The nodename was required in order for the modex to determine if the process was local or not - in addition, some people like to have it to print pretty error messages when a connection failed. The size of this data has been reduced in three ways: (a) reducing the size of the process name itself. The process name consisted of two 32-bit fields for the jobid and vpid. This is far larger than any current system, or system likely to exist in the near future, can support. Accordingly, the default size of these fields has been reduced to 16-bits, which means you can have 32k procs in each of 32k jobs. Since the daemons must have a vpid, and we require one daemon/node, this also restricts the default configuration to 32k nodes. To support any future "mega-clusters", a configuration option --enable-jumbo-apps has been added. This option increases the jobid and vpid field sizes to 32-bits. Someday, if necessary, someone can add yet another option to increase them to 64-bits, I suppose. (b) replacing the string nodename with an integer nodeid. Since we have one daemon/node, the nodeid corresponds to the local daemon's vpid. This replaces an often lengthy string with only 2 (or at most 4) bytes, a substantial reduction. (c) when the mca param requesting that nodenames be sent to support pretty error messages, a second mca param is now used to request FQDN - otherwise, the domain name is stripped (by default) from the message to save space. If someone wants to combine those into a single param somehow (perhaps with an argument?), they are welcome to do so - I didn't want to alter what people are already using. While these may seem like small savings, they actually amount to a significant impact when aggregated across the entire modex operation. Since every proc must receive the modex data regardless of the collective used to send it, just reducing the size of the process name removes nearly 400MBytes of communication from a 32k proc job (admittedly, much of this comm may occur in parallel). So it does add up pretty quickly. 3. routing RML messages to reduce connections. The default messaging system remains point-to-point - i.e., each proc opens a socket to every proc it communicates with and sends its messages directly. A new option uses the orteds as routers - i.e., each proc only opens a single socket to its local orted. All messages are sent from the proc to the orted, which forwards the message to the orted on the node where the intended recipient proc is located - that orted then forwards the message to its local proc (the recipient). This greatly reduces the connection storm we have encountered during startup. It also has the benefit of removing the sharing of every proc's OOB contact with every other proc. The orted routing tables are populated during launch since every orted gets a map of where every proc is being placed. Each proc, therefore, only needs to know the contact info for its local daemon, which is passed in via the environment when the proc is fork/exec'd by the daemon. This alone removes ~50 bytes/process of communication that was in the current STG1 startup message - so for our 32k proc job, this saves us roughly 32k*50 = 1.6MBytes sent to 32k procs = 51GBytes of messaging. Note that you can use the new routing method by specifying -mca routed tree - if you so desire. This mode will become the default at some point in the future. There are a few minor additional changes in the commit that I'll just note in passing: * propagation of command line mca params to the orteds - fixes ticket #1073. See note there for details. * requiring of "finalize" prior to "exit" for MPI procs - fixes ticket #1144. See note there for details. * cleanup of some stale header files This commit was SVN r16364.
2007-10-05 23:48:23 +04:00
if( OMPI_SUCCESS != (ret = mca_pml_ob1_add_procs(procs, num_procs) ) ) {
opal_output(0, "pml:ob1: ft_event(Restart): Failed in add_procs (%d)", ret);
goto clean;
}
These changes were mostly captured in a prior RFC (except for #2 below) and are aimed specifically at improving startup performance and setting up the remaining modifications described in that RFC. The commit has been tested for C/R and Cray operations, and on Odin (SLURM, rsh) and RoadRunner (TM). I tried to update all environments, but obviously could not test them. I know that Windows needs some work, and have highlighted what is know to be needed in the odls process component. This represents a lot of work by Brian, Tim P, Josh, and myself, with much advice from Jeff and others. For posterity, I have appended a copy of the email describing the work that was done: As we have repeatedly noted, the modex operation in MPI_Init is the single greatest consumer of time during startup. To-date, we have executed that operation as an ORTE stage gate that held the process until a startup message containing all required modex (and OOB contact info - see #3 below) info could be sent to it. Each process would send its data to the HNP's registry, which assembled and sent the message when all processes had reported in. In addition, ORTE had taken responsibility for monitoring process status as it progressed through a series of "stage gates". The process reported its status at each gate, and ORTE would then send a "release" message once all procs had reported in. The incoming changes revamp these procedures in three ways: 1. eliminating the ORTE stage gate system and cleanly delineating responsibility between the OMPI and ORTE layers for MPI init/finalize. The modex stage gate (STG1) has been replaced by a collective operation in the modex itself that performs an allgather on the required modex info. The allgather is implemented using the orte_grpcomm framework since the BTL's are not active at that point. At the moment, the grpcomm framework only has a "basic" component analogous to OMPI's "basic" coll framework - I would recommend that the MPI team create additional, more advanced components to improve performance of this step. The other stage gates have been replaced by orte_grpcomm barrier functions. We tried to use MPI barriers instead (since the BTL's are active at that point), but - as we discussed on the telecon - these are not currently true barriers so the job would hang when we fell through while messages were still in process. Note that the grpcomm barrier doesn't actually resolve that problem, but Brian has pointed out that we are unlikely to ever see it violated. Again, you might want to spend a little time on an advanced barrier algorithm as the one in "basic" is very simplistic. Summarizing this change: ORTE no longer tracks process state nor has direct responsibility for synchronizing jobs. This is now done via collective operations within the MPI layer, albeit using ORTE collective communication services. I -strongly- urge the MPI team to implement advanced collective algorithms to improve the performance of this critical procedure. 2. reducing the volume of data exchanged during modex. Data in the modex consisted of the process name, the name of the node where that process is located (expressed as a string), plus a string representation of all contact info. The nodename was required in order for the modex to determine if the process was local or not - in addition, some people like to have it to print pretty error messages when a connection failed. The size of this data has been reduced in three ways: (a) reducing the size of the process name itself. The process name consisted of two 32-bit fields for the jobid and vpid. This is far larger than any current system, or system likely to exist in the near future, can support. Accordingly, the default size of these fields has been reduced to 16-bits, which means you can have 32k procs in each of 32k jobs. Since the daemons must have a vpid, and we require one daemon/node, this also restricts the default configuration to 32k nodes. To support any future "mega-clusters", a configuration option --enable-jumbo-apps has been added. This option increases the jobid and vpid field sizes to 32-bits. Someday, if necessary, someone can add yet another option to increase them to 64-bits, I suppose. (b) replacing the string nodename with an integer nodeid. Since we have one daemon/node, the nodeid corresponds to the local daemon's vpid. This replaces an often lengthy string with only 2 (or at most 4) bytes, a substantial reduction. (c) when the mca param requesting that nodenames be sent to support pretty error messages, a second mca param is now used to request FQDN - otherwise, the domain name is stripped (by default) from the message to save space. If someone wants to combine those into a single param somehow (perhaps with an argument?), they are welcome to do so - I didn't want to alter what people are already using. While these may seem like small savings, they actually amount to a significant impact when aggregated across the entire modex operation. Since every proc must receive the modex data regardless of the collective used to send it, just reducing the size of the process name removes nearly 400MBytes of communication from a 32k proc job (admittedly, much of this comm may occur in parallel). So it does add up pretty quickly. 3. routing RML messages to reduce connections. The default messaging system remains point-to-point - i.e., each proc opens a socket to every proc it communicates with and sends its messages directly. A new option uses the orteds as routers - i.e., each proc only opens a single socket to its local orted. All messages are sent from the proc to the orted, which forwards the message to the orted on the node where the intended recipient proc is located - that orted then forwards the message to its local proc (the recipient). This greatly reduces the connection storm we have encountered during startup. It also has the benefit of removing the sharing of every proc's OOB contact with every other proc. The orted routing tables are populated during launch since every orted gets a map of where every proc is being placed. Each proc, therefore, only needs to know the contact info for its local daemon, which is passed in via the environment when the proc is fork/exec'd by the daemon. This alone removes ~50 bytes/process of communication that was in the current STG1 startup message - so for our 32k proc job, this saves us roughly 32k*50 = 1.6MBytes sent to 32k procs = 51GBytes of messaging. Note that you can use the new routing method by specifying -mca routed tree - if you so desire. This mode will become the default at some point in the future. There are a few minor additional changes in the commit that I'll just note in passing: * propagation of command line mca params to the orteds - fixes ticket #1073. See note there for details. * requiring of "finalize" prior to "exit" for MPI procs - fixes ticket #1144. See note there for details. * cleanup of some stale header files This commit was SVN r16364.
2007-10-05 23:48:23 +04:00
/* Is this barrier necessary ? JJH */
if (OMPI_SUCCESS != (ret = ompi_rte_barrier(coll))) {
opal_output(0, "pml:ob1: ft_event(Restart): Failed in ompi_rte_barrier (%d)", ret);
goto clean;
}
ORTE_WAIT_FOR_COMPLETION(coll->active);
if( NULL != procs ) {
for(p = 0; p < (int)num_procs; ++p) {
OBJ_RELEASE(procs[p]);
}
free(procs);
procs = NULL;
}
}
else if(OPAL_CRS_TERM == state ) {
;
}
else {
;
}
ret = OMPI_SUCCESS;
clean:
OBJ_RELEASE(coll);
return ret;
}
#endif /* OPAL_ENABLE_FT_CR */
int mca_pml_ob1_com_btl_comp(const void *v1, const void *v2)
{
const mca_pml_ob1_com_btl_t *b1 = (const mca_pml_ob1_com_btl_t *) v1;
const mca_pml_ob1_com_btl_t *b2 = (const mca_pml_ob1_com_btl_t *) v2;
if(b1->bml_btl->btl_weight < b2->bml_btl->btl_weight)
return 1;
if(b1->bml_btl->btl_weight > b2->bml_btl->btl_weight)
return -1;
return 0;
}