2009-02-12 00:48:11 +03:00
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/* -*- Mode: C; c-basic-offset:4 ; -*- */
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2005-05-24 02:06:50 +04:00
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/*
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2010-03-13 02:57:50 +03:00
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* Copyright (c) 2004-2010 The Trustees of Indiana University and Indiana
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2005-11-05 22:57:48 +03:00
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* University Research and Technology
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* Corporation. All rights reserved.
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2009-02-12 00:48:11 +03:00
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* Copyright (c) 2004-2009 The University of Tennessee and The University
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2005-11-05 22:57:48 +03:00
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* of Tennessee Research Foundation. All rights
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* reserved.
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2005-09-10 08:06:49 +04:00
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* Copyright (c) 2004-2005 High Performance Computing Center Stuttgart,
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2005-05-24 02:06:50 +04:00
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* University of Stuttgart. All rights reserved.
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* Copyright (c) 2004-2005 The Regents of the University of California.
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* All rights reserved.
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2008-05-30 05:29:09 +04:00
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* Copyright (c) 2008 UT-Battelle, LLC. All rights reserved.
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2008-11-05 00:58:06 +03:00
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* Copyright (c) 2006-2008 University of Houston. All rights reserved.
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2010-09-18 03:04:06 +04:00
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* Copyright (c) 2009-2010 Oracle and/or its affiliates. All rights reserved
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2012-02-06 21:35:21 +04:00
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* Copyright (c) 2011 Sandia National Laboratories. All rights reserved.
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2005-05-24 02:06:50 +04:00
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* $COPYRIGHT$
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2005-09-10 08:06:49 +04:00
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*
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2005-05-24 02:06:50 +04:00
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* Additional copyrights may follow
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2005-09-10 08:06:49 +04:00
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*
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2005-05-24 02:06:50 +04:00
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* $HEADER$
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*/
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#include "ompi_config.h"
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#include <stdlib.h>
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#include <string.h>
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2009-03-04 01:25:13 +03:00
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#include "opal/class/opal_bitmap.h"
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2010-09-21 01:22:33 +04:00
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#include "opal/util/output.h"
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#include "orte/mca/errmgr/errmgr.h"
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#include "orte/mca/grpcomm/grpcomm.h"
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#include "orte/util/show_help.h"
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2006-02-12 04:33:29 +03:00
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#include "ompi/mca/pml/pml.h"
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2007-03-17 02:11:45 +03:00
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#include "ompi/mca/pml/base/base.h"
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2006-02-12 04:33:29 +03:00
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#include "ompi/mca/btl/btl.h"
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2007-02-09 19:38:16 +03:00
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#include "ompi/mca/pml/base/base.h"
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2006-02-12 04:33:29 +03:00
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#include "ompi/mca/btl/base/base.h"
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2010-09-21 01:22:33 +04:00
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#include "ompi/mca/bml/base/base.h"
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#include "ompi/runtime/ompi_cr.h"
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2005-05-24 02:06:50 +04:00
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#include "pml_ob1.h"
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#include "pml_ob1_component.h"
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#include "pml_ob1_comm.h"
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#include "pml_ob1_hdr.h"
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2005-06-02 01:09:43 +04:00
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#include "pml_ob1_recvfrag.h"
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2005-07-12 09:40:56 +04:00
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#include "pml_ob1_sendreq.h"
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#include "pml_ob1_recvreq.h"
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#include "pml_ob1_rdmafrag.h"
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2007-04-19 07:05:12 +04:00
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2005-05-24 02:06:50 +04:00
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mca_pml_ob1_t mca_pml_ob1 = {
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{
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2007-07-11 03:45:23 +04:00
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mca_pml_ob1_add_procs,
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mca_pml_ob1_del_procs,
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mca_pml_ob1_enable,
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mca_pml_ob1_progress,
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mca_pml_ob1_add_comm,
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mca_pml_ob1_del_comm,
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mca_pml_ob1_irecv_init,
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mca_pml_ob1_irecv,
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mca_pml_ob1_recv,
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mca_pml_ob1_isend_init,
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mca_pml_ob1_isend,
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mca_pml_ob1_send,
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mca_pml_ob1_iprobe,
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mca_pml_ob1_probe,
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mca_pml_ob1_start,
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2012-02-06 21:35:21 +04:00
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mca_pml_ob1_improbe,
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mca_pml_ob1_mprobe,
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mca_pml_ob1_imrecv,
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mca_pml_ob1_mrecv,
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2007-07-11 03:45:23 +04:00
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mca_pml_ob1_dump,
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mca_pml_ob1_ft_event,
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2009-08-22 09:21:01 +04:00
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65535,
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2007-07-11 03:45:23 +04:00
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INT_MAX
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2005-05-24 02:06:50 +04:00
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}
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};
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2006-08-17 00:56:22 +04:00
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2007-07-11 03:45:23 +04:00
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void mca_pml_ob1_error_handler( struct mca_btl_base_module_t* btl,
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2010-05-19 15:55:45 +04:00
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int32_t flags, ompi_proc_t* errproc,
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char* btlinfo );
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2006-08-17 00:56:22 +04:00
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2005-05-24 02:06:50 +04:00
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int mca_pml_ob1_enable(bool enable)
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{
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2009-02-12 00:48:11 +03:00
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if( false == enable ) {
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return OMPI_SUCCESS;
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}
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2007-07-11 03:45:23 +04:00
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OBJ_CONSTRUCT(&mca_pml_ob1.lock, opal_mutex_t);
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/* fragments */
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OBJ_CONSTRUCT(&mca_pml_ob1.rdma_frags, ompi_free_list_t);
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2007-11-02 02:38:50 +03:00
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ompi_free_list_init_new( &mca_pml_ob1.rdma_frags,
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2007-07-11 03:45:23 +04:00
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sizeof(mca_pml_ob1_rdma_frag_t),
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2010-07-06 18:33:36 +04:00
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opal_cache_line_size,
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2007-07-11 03:45:23 +04:00
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OBJ_CLASS(mca_pml_ob1_rdma_frag_t),
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2010-07-06 18:33:36 +04:00
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0,opal_cache_line_size,
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2007-07-11 03:45:23 +04:00
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mca_pml_ob1.free_list_num,
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mca_pml_ob1.free_list_max,
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mca_pml_ob1.free_list_inc,
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NULL );
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OBJ_CONSTRUCT(&mca_pml_ob1.recv_frags, ompi_free_list_t);
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2007-11-02 02:38:50 +03:00
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ompi_free_list_init_new( &mca_pml_ob1.recv_frags,
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2007-07-11 03:45:23 +04:00
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sizeof(mca_pml_ob1_recv_frag_t) + mca_pml_ob1.unexpected_limit,
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2010-07-06 18:33:36 +04:00
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opal_cache_line_size,
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2007-07-11 03:45:23 +04:00
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OBJ_CLASS(mca_pml_ob1_recv_frag_t),
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2010-07-06 18:33:36 +04:00
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0,opal_cache_line_size,
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2007-07-11 03:45:23 +04:00
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mca_pml_ob1.free_list_num,
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mca_pml_ob1.free_list_max,
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mca_pml_ob1.free_list_inc,
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NULL );
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OBJ_CONSTRUCT(&mca_pml_ob1.pending_pckts, ompi_free_list_t);
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2007-11-02 02:38:50 +03:00
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ompi_free_list_init_new( &mca_pml_ob1.pending_pckts,
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2007-07-11 03:45:23 +04:00
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sizeof(mca_pml_ob1_pckt_pending_t),
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2010-07-06 18:33:36 +04:00
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opal_cache_line_size,
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2007-07-11 03:45:23 +04:00
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OBJ_CLASS(mca_pml_ob1_pckt_pending_t),
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2010-07-06 18:33:36 +04:00
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0,opal_cache_line_size,
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2007-07-11 03:45:23 +04:00
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mca_pml_ob1.free_list_num,
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mca_pml_ob1.free_list_max,
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mca_pml_ob1.free_list_inc,
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NULL );
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OBJ_CONSTRUCT(&mca_pml_ob1.buffers, ompi_free_list_t);
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OBJ_CONSTRUCT(&mca_pml_ob1.send_ranges, ompi_free_list_t);
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2007-11-02 02:38:50 +03:00
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ompi_free_list_init_new( &mca_pml_ob1.send_ranges,
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2007-07-11 03:45:23 +04:00
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sizeof(mca_pml_ob1_send_range_t) +
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(mca_pml_ob1.max_send_per_range - 1) * sizeof(mca_pml_ob1_com_btl_t),
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2010-07-06 18:33:36 +04:00
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opal_cache_line_size,
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2007-07-11 03:45:23 +04:00
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OBJ_CLASS(mca_pml_ob1_send_range_t),
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2010-07-06 18:33:36 +04:00
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0,opal_cache_line_size,
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2007-07-11 03:45:23 +04:00
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mca_pml_ob1.free_list_num,
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mca_pml_ob1.free_list_max,
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mca_pml_ob1.free_list_inc,
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NULL );
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/* pending operations */
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OBJ_CONSTRUCT(&mca_pml_ob1.send_pending, opal_list_t);
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OBJ_CONSTRUCT(&mca_pml_ob1.recv_pending, opal_list_t);
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OBJ_CONSTRUCT(&mca_pml_ob1.pckt_pending, opal_list_t);
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OBJ_CONSTRUCT(&mca_pml_ob1.rdma_pending, opal_list_t);
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2008-09-16 03:04:18 +04:00
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/* missing communicator pending list */
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OBJ_CONSTRUCT(&mca_pml_ob1.non_existing_communicator_pending, opal_list_t);
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2007-07-11 03:45:23 +04:00
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/**
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* If we get here this is the PML who get selected for the run. We
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* should get ownership for the send and receive requests list, and
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* initialize them with the size of our own requests.
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*/
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2007-11-02 02:38:50 +03:00
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ompi_free_list_init_new( &mca_pml_base_send_requests,
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2007-08-20 16:06:27 +04:00
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sizeof(mca_pml_ob1_send_request_t) +
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(mca_pml_ob1.max_rdma_per_request - 1) *
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sizeof(mca_pml_ob1_com_btl_t),
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2010-07-06 18:33:36 +04:00
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opal_cache_line_size,
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2007-07-11 03:45:23 +04:00
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OBJ_CLASS(mca_pml_ob1_send_request_t),
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2010-07-06 18:33:36 +04:00
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0,opal_cache_line_size,
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2007-07-11 03:45:23 +04:00
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mca_pml_ob1.free_list_num,
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mca_pml_ob1.free_list_max,
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mca_pml_ob1.free_list_inc,
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NULL );
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2007-11-02 02:38:50 +03:00
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ompi_free_list_init_new( &mca_pml_base_recv_requests,
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2007-08-20 16:06:27 +04:00
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sizeof(mca_pml_ob1_recv_request_t) +
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(mca_pml_ob1.max_rdma_per_request - 1) *
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sizeof(mca_pml_ob1_com_btl_t),
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2010-07-06 18:33:36 +04:00
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opal_cache_line_size,
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2007-07-11 03:45:23 +04:00
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OBJ_CLASS(mca_pml_ob1_recv_request_t),
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2010-07-06 18:33:36 +04:00
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0,opal_cache_line_size,
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2007-07-11 03:45:23 +04:00
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mca_pml_ob1.free_list_num,
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mca_pml_ob1.free_list_max,
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mca_pml_ob1.free_list_inc,
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NULL );
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2005-09-10 08:06:49 +04:00
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mca_pml_ob1.enabled = true;
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2005-05-24 02:06:50 +04:00
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return OMPI_SUCCESS;
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}
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int mca_pml_ob1_add_comm(ompi_communicator_t* comm)
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{
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/* allocate pml specific comm data */
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mca_pml_ob1_comm_t* pml_comm = OBJ_NEW(mca_pml_ob1_comm_t);
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2008-11-05 00:58:06 +03:00
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opal_list_item_t *item, *next_item;
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2008-09-16 03:04:18 +04:00
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mca_pml_ob1_recv_frag_t* frag;
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mca_pml_ob1_comm_proc_t* pml_proc;
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mca_pml_ob1_match_hdr_t* hdr;
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2005-05-24 02:06:50 +04:00
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int i;
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if (NULL == pml_comm) {
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return OMPI_ERR_OUT_OF_RESOURCE;
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}
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2009-04-30 23:23:57 +04:00
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/* should never happen, but it was, so check */
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if (comm->c_contextid > mca_pml_ob1.super.pml_max_contextid) {
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OBJ_RELEASE(pml_comm);
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return OMPI_ERR_OUT_OF_RESOURCE;
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}
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2005-05-24 02:06:50 +04:00
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mca_pml_ob1_comm_init_size(pml_comm, comm->c_remote_group->grp_proc_count);
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comm->c_pml_comm = pml_comm;
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2006-09-21 02:14:46 +04:00
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for( i = 0; i < comm->c_remote_group->grp_proc_count; i++ ) {
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2007-08-04 04:41:26 +04:00
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pml_comm->procs[i].ompi_proc = ompi_group_peer_lookup(comm->c_remote_group,i);
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2010-04-23 19:14:55 +04:00
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OBJ_RETAIN(pml_comm->procs[i].ompi_proc);
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2005-08-12 06:41:14 +04:00
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}
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2008-09-16 03:04:18 +04:00
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/* Grab all related messages from the non_existing_communicator pending queue */
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for( item = opal_list_get_first(&mca_pml_ob1.non_existing_communicator_pending);
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item != opal_list_get_end(&mca_pml_ob1.non_existing_communicator_pending);
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2008-11-05 00:58:06 +03:00
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item = next_item ) {
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2008-09-16 03:04:18 +04:00
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frag = (mca_pml_ob1_recv_frag_t*)item;
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2008-11-05 00:58:06 +03:00
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next_item = opal_list_get_next(item);
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2008-09-16 03:04:18 +04:00
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hdr = &frag->hdr.hdr_match;
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/* Is this fragment for the current communicator ? */
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if( frag->hdr.hdr_match.hdr_ctx != comm->c_contextid )
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continue;
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2009-01-03 18:15:42 +03:00
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/* As we now know we work on a fragment for this communicator
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* we should remove it from the
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* non_existing_communicator_pending list. */
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opal_list_remove_item( &mca_pml_ob1.non_existing_communicator_pending,
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item );
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2008-09-16 03:04:18 +04:00
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add_fragment_to_unexpected:
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2008-11-05 00:58:06 +03:00
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2008-09-16 03:04:18 +04:00
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/* We generate the MSG_ARRIVED event as soon as the PML is aware
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* of a matching fragment arrival. Independing if it is received
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* on the correct order or not. This will allow the tools to
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* figure out if the messages are not received in the correct
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* order (if multiple network interfaces).
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*/
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PERUSE_TRACE_MSG_EVENT(PERUSE_COMM_MSG_ARRIVED, comm,
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hdr->hdr_src, hdr->hdr_tag, PERUSE_RECV);
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/* There is no matching to be done, and no lock to be held on the communicator as
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* we know at this point that the communicator has not yet been returned to the user.
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* The only required protection is around the non_existing_communicator_pending queue.
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* We just have to push the fragment into the unexpected list of the corresponding
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* proc, or into the out-of-order (cant_match) list.
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*/
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pml_proc = &(pml_comm->procs[hdr->hdr_src]);
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if( ((uint16_t)hdr->hdr_seq) == ((uint16_t)pml_proc->expected_sequence) ) {
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/* We're now expecting the next sequence number. */
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pml_proc->expected_sequence++;
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opal_list_append( &pml_proc->unexpected_frags, (opal_list_item_t*)frag );
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|
|
PERUSE_TRACE_MSG_EVENT(PERUSE_COMM_MSG_INSERT_IN_UNEX_Q, comm,
|
|
|
|
hdr->hdr_src, hdr->hdr_tag, PERUSE_RECV);
|
|
|
|
/* And now the ugly part. As some fragments can be inserted in the cant_match list,
|
|
|
|
* every time we succesfully add a fragment in the unexpected list we have to make
|
|
|
|
* sure the next one is not in the cant_match. Otherwise, we will endup in a deadlock
|
|
|
|
* situation as the cant_match is only checked when a new fragment is received from
|
|
|
|
* the network.
|
|
|
|
*/
|
|
|
|
for(frag = (mca_pml_ob1_recv_frag_t *)opal_list_get_first(&pml_proc->frags_cant_match);
|
|
|
|
frag != (mca_pml_ob1_recv_frag_t *)opal_list_get_end(&pml_proc->frags_cant_match);
|
|
|
|
frag = (mca_pml_ob1_recv_frag_t *)opal_list_get_next(frag)) {
|
|
|
|
hdr = &frag->hdr.hdr_match;
|
|
|
|
/* If the message has the next expected seq from that proc... */
|
|
|
|
if(hdr->hdr_seq != pml_proc->expected_sequence)
|
|
|
|
continue;
|
|
|
|
|
|
|
|
opal_list_remove_item(&pml_proc->frags_cant_match, (opal_list_item_t*)frag);
|
|
|
|
goto add_fragment_to_unexpected;
|
|
|
|
}
|
|
|
|
} else {
|
|
|
|
opal_list_append( &pml_proc->frags_cant_match, (opal_list_item_t*)frag );
|
|
|
|
}
|
|
|
|
}
|
2005-05-24 02:06:50 +04:00
|
|
|
return OMPI_SUCCESS;
|
|
|
|
}
|
|
|
|
|
|
|
|
int mca_pml_ob1_del_comm(ompi_communicator_t* comm)
|
|
|
|
{
|
2009-04-10 20:32:02 +04:00
|
|
|
mca_pml_ob1_comm_t* pml_comm = comm->c_pml_comm;
|
|
|
|
int i;
|
|
|
|
|
|
|
|
for( i = 0; i < comm->c_remote_group->grp_proc_count; i++ ) {
|
|
|
|
OBJ_RELEASE(pml_comm->procs[i].ompi_proc);
|
|
|
|
}
|
2005-05-24 02:06:50 +04:00
|
|
|
OBJ_RELEASE(comm->c_pml_comm);
|
|
|
|
comm->c_pml_comm = NULL;
|
|
|
|
return OMPI_SUCCESS;
|
|
|
|
}
|
|
|
|
|
|
|
|
|
|
|
|
/*
|
2008-09-30 19:47:43 +04:00
|
|
|
* For each proc setup a datastructure that indicates the BTLs
|
2005-05-24 02:06:50 +04:00
|
|
|
* that can be used to reach the destination.
|
|
|
|
*
|
|
|
|
*/
|
|
|
|
|
|
|
|
int mca_pml_ob1_add_procs(ompi_proc_t** procs, size_t nprocs)
|
|
|
|
{
|
2009-03-04 01:25:13 +03:00
|
|
|
opal_bitmap_t reachable;
|
2005-05-24 02:06:50 +04:00
|
|
|
int rc;
|
2006-07-04 05:20:20 +04:00
|
|
|
size_t i;
|
2009-08-10 16:46:20 +04:00
|
|
|
opal_list_item_t *item;
|
2005-09-10 08:06:49 +04:00
|
|
|
|
2005-05-24 02:06:50 +04:00
|
|
|
if(nprocs == 0)
|
|
|
|
return OMPI_SUCCESS;
|
|
|
|
|
2007-07-01 20:17:43 +04:00
|
|
|
/* we don't have any endpoint data we need to cache on the
|
|
|
|
ompi_proc_t, so set proc_pml to NULL */
|
|
|
|
for (i = 0 ; i < nprocs ; ++i) {
|
|
|
|
procs[i]->proc_pml = NULL;
|
|
|
|
}
|
|
|
|
|
2009-03-04 01:25:13 +03:00
|
|
|
OBJ_CONSTRUCT(&reachable, opal_bitmap_t);
|
|
|
|
rc = opal_bitmap_init(&reachable, (int)nprocs);
|
2005-05-24 02:06:50 +04:00
|
|
|
if(OMPI_SUCCESS != rc)
|
|
|
|
return rc;
|
|
|
|
|
2007-03-17 02:11:45 +03:00
|
|
|
/*
|
|
|
|
* JJH: Disable this in FT enabled builds since
|
|
|
|
* we use a wrapper PML. It will cause this check to
|
|
|
|
* return failure as all processes will return the wrapper PML
|
|
|
|
* component in use instead of the wrapped PML component underneath.
|
|
|
|
*/
|
2010-03-13 02:57:50 +03:00
|
|
|
#if OPAL_ENABLE_FT_CR == 0
|
2007-02-09 19:38:16 +03:00
|
|
|
/* make sure remote procs are using the same PML as us */
|
|
|
|
if (OMPI_SUCCESS != (rc = mca_pml_base_pml_check_selected("ob1",
|
|
|
|
procs,
|
|
|
|
nprocs))) {
|
|
|
|
return rc;
|
|
|
|
}
|
2007-03-17 02:11:45 +03:00
|
|
|
#endif
|
2007-02-09 19:38:16 +03:00
|
|
|
|
2007-07-01 20:17:43 +04:00
|
|
|
rc = mca_bml.bml_add_procs( nprocs,
|
|
|
|
procs,
|
|
|
|
&reachable );
|
2005-09-10 08:06:49 +04:00
|
|
|
if(OMPI_SUCCESS != rc)
|
2007-07-01 20:17:43 +04:00
|
|
|
goto cleanup_and_return;
|
2005-09-10 08:06:49 +04:00
|
|
|
|
2009-08-10 16:46:20 +04:00
|
|
|
/* Check that values supplied by all initialized btls will work
|
|
|
|
for us. Note that this is the list of all initialized BTLs,
|
|
|
|
not the ones used for the just added procs. This is a little
|
|
|
|
overkill and inaccurate, as we may end up not using the BTL in
|
|
|
|
question and all add_procs calls after the first one are
|
|
|
|
duplicating an already completed check. But the final
|
|
|
|
initialization of the PML occurs before the final
|
|
|
|
initialization of the BTLs, and iterating through the in-use
|
|
|
|
BTLs requires iterating over the procs, as the BML does not
|
|
|
|
expose all currently in use btls. */
|
|
|
|
|
|
|
|
for (item = opal_list_get_first(&mca_btl_base_modules_initialized) ;
|
|
|
|
item != opal_list_get_end(&mca_btl_base_modules_initialized) ;
|
|
|
|
item = opal_list_get_next(item)) {
|
|
|
|
mca_btl_base_selected_module_t *sm =
|
|
|
|
(mca_btl_base_selected_module_t*) item;
|
|
|
|
if (sm->btl_module->btl_eager_limit < sizeof(mca_pml_ob1_hdr_t)) {
|
|
|
|
orte_show_help("help-mpi-pml-ob1.txt", "eager_limit_too_small",
|
|
|
|
true,
|
|
|
|
sm->btl_component->btl_version.mca_component_name,
|
|
|
|
orte_process_info.nodename,
|
|
|
|
sm->btl_component->btl_version.mca_component_name,
|
|
|
|
sm->btl_module->btl_eager_limit,
|
|
|
|
sm->btl_component->btl_version.mca_component_name,
|
|
|
|
sizeof(mca_pml_ob1_hdr_t),
|
|
|
|
sm->btl_component->btl_version.mca_component_name);
|
|
|
|
rc = OMPI_ERR_BAD_PARAM;
|
|
|
|
goto cleanup_and_return;
|
|
|
|
}
|
|
|
|
}
|
|
|
|
|
2010-09-21 01:22:33 +04:00
|
|
|
|
2009-04-10 20:32:02 +04:00
|
|
|
/* TODO: Move these callback registration to another place */
|
2008-05-30 05:29:09 +04:00
|
|
|
rc = mca_bml.bml_register( MCA_PML_OB1_HDR_TYPE_MATCH,
|
|
|
|
mca_pml_ob1_recv_frag_callback_match,
|
|
|
|
NULL );
|
|
|
|
if(OMPI_SUCCESS != rc)
|
|
|
|
goto cleanup_and_return;
|
|
|
|
|
|
|
|
rc = mca_bml.bml_register( MCA_PML_OB1_HDR_TYPE_RNDV,
|
|
|
|
mca_pml_ob1_recv_frag_callback_rndv,
|
|
|
|
NULL );
|
|
|
|
if(OMPI_SUCCESS != rc)
|
|
|
|
goto cleanup_and_return;
|
|
|
|
|
|
|
|
rc = mca_bml.bml_register( MCA_PML_OB1_HDR_TYPE_RGET,
|
|
|
|
mca_pml_ob1_recv_frag_callback_rget,
|
|
|
|
NULL );
|
|
|
|
if(OMPI_SUCCESS != rc)
|
|
|
|
goto cleanup_and_return;
|
|
|
|
|
|
|
|
rc = mca_bml.bml_register( MCA_PML_OB1_HDR_TYPE_ACK,
|
|
|
|
mca_pml_ob1_recv_frag_callback_ack,
|
|
|
|
NULL );
|
|
|
|
if(OMPI_SUCCESS != rc)
|
|
|
|
goto cleanup_and_return;
|
|
|
|
|
|
|
|
rc = mca_bml.bml_register( MCA_PML_OB1_HDR_TYPE_FRAG,
|
|
|
|
mca_pml_ob1_recv_frag_callback_frag,
|
|
|
|
NULL );
|
|
|
|
if(OMPI_SUCCESS != rc)
|
|
|
|
goto cleanup_and_return;
|
|
|
|
|
|
|
|
rc = mca_bml.bml_register( MCA_PML_OB1_HDR_TYPE_PUT,
|
|
|
|
mca_pml_ob1_recv_frag_callback_put,
|
|
|
|
NULL );
|
|
|
|
if(OMPI_SUCCESS != rc)
|
|
|
|
goto cleanup_and_return;
|
|
|
|
|
|
|
|
rc = mca_bml.bml_register( MCA_PML_OB1_HDR_TYPE_FIN,
|
|
|
|
mca_pml_ob1_recv_frag_callback_fin,
|
2007-07-01 20:17:43 +04:00
|
|
|
NULL );
|
|
|
|
if(OMPI_SUCCESS != rc)
|
|
|
|
goto cleanup_and_return;
|
2006-08-17 00:56:22 +04:00
|
|
|
|
|
|
|
/* register error handlers */
|
|
|
|
rc = mca_bml.bml_register_error(mca_pml_ob1_error_handler);
|
2007-07-01 20:17:43 +04:00
|
|
|
if(OMPI_SUCCESS != rc)
|
|
|
|
goto cleanup_and_return;
|
2006-08-17 00:56:22 +04:00
|
|
|
|
2007-07-01 20:17:43 +04:00
|
|
|
cleanup_and_return:
|
2006-02-27 14:06:01 +03:00
|
|
|
OBJ_DESTRUCT(&reachable);
|
2007-07-01 20:17:43 +04:00
|
|
|
|
2005-09-10 08:06:49 +04:00
|
|
|
return rc;
|
2005-05-24 02:06:50 +04:00
|
|
|
}
|
|
|
|
|
|
|
|
/*
|
|
|
|
* iterate through each proc and notify any PTLs associated
|
|
|
|
* with the proc that it is/has gone away
|
|
|
|
*/
|
|
|
|
|
|
|
|
int mca_pml_ob1_del_procs(ompi_proc_t** procs, size_t nprocs)
|
|
|
|
{
|
2005-08-12 06:41:14 +04:00
|
|
|
return mca_bml.bml_del_procs(nprocs, procs);
|
2005-05-24 02:06:50 +04:00
|
|
|
}
|
|
|
|
|
2006-03-17 21:46:48 +03:00
|
|
|
/*
|
|
|
|
* diagnostics
|
|
|
|
*/
|
|
|
|
|
2006-03-20 18:41:45 +03:00
|
|
|
int mca_pml_ob1_dump(struct ompi_communicator_t* comm, int verbose)
|
2006-03-17 21:46:48 +03:00
|
|
|
{
|
|
|
|
struct mca_pml_comm_t* pml_comm = comm->c_pml_comm;
|
2007-02-02 09:47:35 +03:00
|
|
|
int i;
|
2006-03-17 21:46:48 +03:00
|
|
|
|
|
|
|
/* iterate through all procs on communicator */
|
2007-02-02 09:47:35 +03:00
|
|
|
for( i = 0; i < (int)pml_comm->num_procs; i++ ) {
|
2006-03-17 21:46:48 +03:00
|
|
|
mca_pml_ob1_comm_proc_t* proc = &pml_comm->procs[i];
|
2006-09-21 02:14:46 +04:00
|
|
|
mca_bml_base_endpoint_t* ep = (mca_bml_base_endpoint_t*)proc->ompi_proc->proc_bml;
|
2006-03-17 21:46:48 +03:00
|
|
|
size_t n;
|
|
|
|
|
2008-06-09 18:53:58 +04:00
|
|
|
opal_output(0, "[Rank %d]\n", i);
|
2006-03-17 21:46:48 +03:00
|
|
|
/* dump all receive queues */
|
|
|
|
|
|
|
|
/* dump all btls */
|
|
|
|
for(n=0; n<ep->btl_eager.arr_size; n++) {
|
2006-03-21 21:18:22 +03:00
|
|
|
mca_bml_base_btl_t* bml_btl = &ep->btl_eager.bml_btls[n];
|
2006-03-17 21:46:48 +03:00
|
|
|
bml_btl->btl->btl_dump(bml_btl->btl, bml_btl->btl_endpoint, verbose);
|
|
|
|
}
|
|
|
|
}
|
2006-03-20 18:41:45 +03:00
|
|
|
return OMPI_SUCCESS;
|
2006-03-17 21:46:48 +03:00
|
|
|
}
|
|
|
|
|
2007-07-11 03:45:23 +04:00
|
|
|
static void mca_pml_ob1_fin_completion( mca_btl_base_module_t* btl,
|
|
|
|
struct mca_btl_base_endpoint_t* ep,
|
|
|
|
struct mca_btl_base_descriptor_t* des,
|
|
|
|
int status )
|
2006-07-20 18:44:35 +04:00
|
|
|
{
|
|
|
|
|
|
|
|
mca_bml_base_btl_t* bml_btl = (mca_bml_base_btl_t*) des->des_context;
|
|
|
|
|
|
|
|
/* check for pending requests */
|
|
|
|
MCA_PML_OB1_PROGRESS_PENDING(bml_btl);
|
|
|
|
}
|
|
|
|
|
2009-04-07 20:48:58 +04:00
|
|
|
/**
|
|
|
|
* Send an FIN to the peer. If we fail to send this ack (no more available
|
|
|
|
* fragments or the send failed) this function automatically add the FIN
|
|
|
|
* to the list of pending FIN, Which guarantee that the FIN will be sent
|
|
|
|
* later.
|
|
|
|
*/
|
2007-07-11 03:45:23 +04:00
|
|
|
int mca_pml_ob1_send_fin( ompi_proc_t* proc,
|
|
|
|
mca_bml_base_btl_t* bml_btl,
|
2010-04-23 19:14:55 +04:00
|
|
|
ompi_ptr_t hdr_des,
|
2007-07-11 03:45:23 +04:00
|
|
|
uint8_t order,
|
|
|
|
uint32_t status )
|
2006-07-20 18:44:35 +04:00
|
|
|
{
|
|
|
|
mca_btl_base_descriptor_t* fin;
|
|
|
|
mca_pml_ob1_fin_hdr_t* hdr;
|
|
|
|
int rc;
|
|
|
|
|
2007-12-09 17:08:01 +03:00
|
|
|
mca_bml_base_alloc(bml_btl, &fin, order, sizeof(mca_pml_ob1_fin_hdr_t),
|
2008-10-23 00:13:33 +04:00
|
|
|
MCA_BTL_DES_FLAGS_PRIORITY | MCA_BTL_DES_FLAGS_BTL_OWNERSHIP);
|
2007-12-09 16:58:17 +03:00
|
|
|
|
2006-07-20 18:44:35 +04:00
|
|
|
if(NULL == fin) {
|
2007-06-03 12:31:58 +04:00
|
|
|
MCA_PML_OB1_ADD_FIN_TO_PENDING(proc, hdr_des, bml_btl, order, status);
|
2006-07-20 18:44:35 +04:00
|
|
|
return OMPI_ERR_OUT_OF_RESOURCE;
|
|
|
|
}
|
|
|
|
fin->des_cbfunc = mca_pml_ob1_fin_completion;
|
|
|
|
fin->des_cbdata = NULL;
|
|
|
|
|
|
|
|
/* fill in header */
|
2007-01-05 01:07:37 +03:00
|
|
|
hdr = (mca_pml_ob1_fin_hdr_t*)fin->des_src->seg_addr.pval;
|
2006-07-20 18:44:35 +04:00
|
|
|
hdr->hdr_common.hdr_flags = 0;
|
|
|
|
hdr->hdr_common.hdr_type = MCA_PML_OB1_HDR_TYPE_FIN;
|
2010-04-23 19:14:55 +04:00
|
|
|
hdr->hdr_des = hdr_des;
|
2007-06-03 12:31:58 +04:00
|
|
|
hdr->hdr_fail = status;
|
2006-07-20 18:44:35 +04:00
|
|
|
|
2007-12-16 11:45:44 +03:00
|
|
|
ob1_hdr_hton(hdr, MCA_PML_OB1_HDR_TYPE_FIN, proc);
|
2006-07-20 18:44:35 +04:00
|
|
|
|
|
|
|
/* queue request */
|
2008-05-30 05:29:09 +04:00
|
|
|
rc = mca_bml_base_send( bml_btl,
|
|
|
|
fin,
|
|
|
|
MCA_PML_OB1_HDR_TYPE_FIN );
|
2008-05-30 07:58:39 +04:00
|
|
|
if( OPAL_LIKELY( rc >= 0 ) ) {
|
|
|
|
if( OPAL_LIKELY( 1 == rc ) ) {
|
|
|
|
MCA_PML_OB1_PROGRESS_PENDING(bml_btl);
|
|
|
|
}
|
|
|
|
return OMPI_SUCCESS;
|
2006-07-20 18:44:35 +04:00
|
|
|
}
|
2008-05-30 07:58:39 +04:00
|
|
|
mca_bml_base_free(bml_btl, fin);
|
|
|
|
MCA_PML_OB1_ADD_FIN_TO_PENDING(proc, hdr_des, bml_btl, order, status);
|
|
|
|
return OMPI_ERR_OUT_OF_RESOURCE;
|
2006-07-20 18:44:35 +04:00
|
|
|
}
|
|
|
|
|
|
|
|
void mca_pml_ob1_process_pending_packets(mca_bml_base_btl_t* bml_btl)
|
|
|
|
{
|
|
|
|
mca_pml_ob1_pckt_pending_t *pckt;
|
2006-10-20 07:57:44 +04:00
|
|
|
int32_t i, rc, s = (int32_t)opal_list_get_size(&mca_pml_ob1.pckt_pending);
|
2006-07-20 18:44:35 +04:00
|
|
|
|
|
|
|
for(i = 0; i < s; i++) {
|
2006-12-03 13:12:09 +03:00
|
|
|
mca_bml_base_btl_t *send_dst = NULL;
|
2006-07-20 18:44:35 +04:00
|
|
|
OPAL_THREAD_LOCK(&mca_pml_ob1.lock);
|
|
|
|
pckt = (mca_pml_ob1_pckt_pending_t*)
|
|
|
|
opal_list_remove_first(&mca_pml_ob1.pckt_pending);
|
|
|
|
OPAL_THREAD_UNLOCK(&mca_pml_ob1.lock);
|
|
|
|
if(NULL == pckt)
|
|
|
|
break;
|
2006-12-03 13:12:09 +03:00
|
|
|
if(pckt->bml_btl != NULL &&
|
|
|
|
pckt->bml_btl->btl == bml_btl->btl) {
|
|
|
|
send_dst = pckt->bml_btl;
|
|
|
|
} else {
|
|
|
|
send_dst = mca_bml_base_btl_array_find(
|
|
|
|
&pckt->proc->proc_bml->btl_eager, bml_btl->btl);
|
|
|
|
}
|
2006-10-26 17:21:47 +04:00
|
|
|
if(NULL == send_dst) {
|
|
|
|
OPAL_THREAD_LOCK(&mca_pml_ob1.lock);
|
|
|
|
opal_list_append(&mca_pml_ob1.pckt_pending,
|
2009-04-07 20:48:58 +04:00
|
|
|
(opal_list_item_t*)pckt);
|
2006-10-26 17:21:47 +04:00
|
|
|
OPAL_THREAD_UNLOCK(&mca_pml_ob1.lock);
|
|
|
|
continue;
|
|
|
|
}
|
|
|
|
|
2006-07-20 18:44:35 +04:00
|
|
|
switch(pckt->hdr.hdr_common.hdr_type) {
|
|
|
|
case MCA_PML_OB1_HDR_TYPE_ACK:
|
|
|
|
rc = mca_pml_ob1_recv_request_ack_send_btl(pckt->proc,
|
2006-10-26 17:21:47 +04:00
|
|
|
send_dst,
|
2007-01-05 01:07:37 +03:00
|
|
|
pckt->hdr.hdr_ack.hdr_src_req.lval,
|
|
|
|
pckt->hdr.hdr_ack.hdr_dst_req.pval,
|
2008-03-27 11:56:43 +03:00
|
|
|
pckt->hdr.hdr_ack.hdr_send_offset,
|
|
|
|
pckt->hdr.hdr_common.hdr_flags & MCA_PML_OB1_HDR_FLAGS_NORDMA);
|
2010-05-18 03:08:56 +04:00
|
|
|
if( OPAL_UNLIKELY(OMPI_ERR_OUT_OF_RESOURCE == OPAL_SOS_GET_ERROR_CODE(rc)) ) {
|
2009-04-07 01:45:08 +04:00
|
|
|
OPAL_THREAD_LOCK(&mca_pml_ob1.lock);
|
|
|
|
opal_list_append(&mca_pml_ob1.pckt_pending,
|
|
|
|
(opal_list_item_t*)pckt);
|
|
|
|
OPAL_THREAD_UNLOCK(&mca_pml_ob1.lock);
|
2006-07-20 18:44:35 +04:00
|
|
|
return;
|
|
|
|
}
|
|
|
|
break;
|
|
|
|
case MCA_PML_OB1_HDR_TYPE_FIN:
|
2007-05-28 10:51:12 +04:00
|
|
|
rc = mca_pml_ob1_send_fin(pckt->proc, send_dst,
|
2010-04-23 19:14:55 +04:00
|
|
|
pckt->hdr.hdr_fin.hdr_des,
|
2007-06-03 12:31:58 +04:00
|
|
|
pckt->order,
|
|
|
|
pckt->hdr.hdr_fin.hdr_fail);
|
2010-05-18 03:08:56 +04:00
|
|
|
if( OPAL_UNLIKELY(OMPI_ERR_OUT_OF_RESOURCE == OPAL_SOS_GET_ERROR_CODE(rc)) ) {
|
2009-04-07 01:45:08 +04:00
|
|
|
return;
|
|
|
|
}
|
2006-07-20 18:44:35 +04:00
|
|
|
break;
|
|
|
|
default:
|
2008-06-09 18:53:58 +04:00
|
|
|
opal_output(0, "[%s:%d] wrong header type\n",
|
2009-04-07 01:45:08 +04:00
|
|
|
__FILE__, __LINE__);
|
2006-07-20 18:44:35 +04:00
|
|
|
break;
|
|
|
|
}
|
2009-04-07 01:45:08 +04:00
|
|
|
/* We're done with this packet, return it back to the free list */
|
|
|
|
MCA_PML_OB1_PCKT_PENDING_RETURN(pckt);
|
2006-07-20 18:44:35 +04:00
|
|
|
}
|
|
|
|
}
|
|
|
|
|
|
|
|
void mca_pml_ob1_process_pending_rdma(void)
|
|
|
|
{
|
|
|
|
mca_pml_ob1_rdma_frag_t* frag;
|
2006-10-20 07:57:44 +04:00
|
|
|
int32_t i, rc, s = (int32_t)opal_list_get_size(&mca_pml_ob1.rdma_pending);
|
2006-07-20 18:44:35 +04:00
|
|
|
|
|
|
|
for(i = 0; i < s; i++) {
|
|
|
|
OPAL_THREAD_LOCK(&mca_pml_ob1.lock);
|
|
|
|
frag = (mca_pml_ob1_rdma_frag_t*)
|
|
|
|
opal_list_remove_first(&mca_pml_ob1.rdma_pending);
|
|
|
|
OPAL_THREAD_UNLOCK(&mca_pml_ob1.lock);
|
|
|
|
if(NULL == frag)
|
|
|
|
break;
|
|
|
|
if(frag->rdma_state == MCA_PML_OB1_RDMA_PUT) {
|
2007-06-03 12:31:58 +04:00
|
|
|
frag->retries++;
|
2006-07-20 18:44:35 +04:00
|
|
|
rc = mca_pml_ob1_send_request_put_frag(frag);
|
|
|
|
} else {
|
|
|
|
rc = mca_pml_ob1_recv_request_get_frag(frag);
|
|
|
|
}
|
2010-05-18 03:08:56 +04:00
|
|
|
if(OMPI_ERR_OUT_OF_RESOURCE == OPAL_SOS_GET_ERROR_CODE(rc))
|
2006-07-20 18:44:35 +04:00
|
|
|
break;
|
|
|
|
}
|
|
|
|
}
|
2006-08-17 00:56:22 +04:00
|
|
|
|
|
|
|
|
2009-08-06 02:23:26 +04:00
|
|
|
void mca_pml_ob1_error_handler(
|
2010-05-19 15:55:45 +04:00
|
|
|
struct mca_btl_base_module_t* btl, int32_t flags,
|
2010-09-22 17:48:22 +04:00
|
|
|
ompi_proc_t* errproc, char* btlinfo ) {
|
2009-08-06 02:23:26 +04:00
|
|
|
orte_errmgr.abort(-1, NULL);
|
2006-08-17 00:56:22 +04:00
|
|
|
}
|
2007-04-05 17:52:05 +04:00
|
|
|
|
2010-03-13 02:57:50 +03:00
|
|
|
#if OPAL_ENABLE_FT_CR == 0
|
2008-10-16 19:09:00 +04:00
|
|
|
int mca_pml_ob1_ft_event( int state ) {
|
|
|
|
return OMPI_SUCCESS;
|
|
|
|
}
|
|
|
|
#else
|
2007-04-05 17:52:05 +04:00
|
|
|
int mca_pml_ob1_ft_event( int state )
|
|
|
|
{
|
2008-10-16 19:09:00 +04:00
|
|
|
static bool first_continue_pass = false;
|
2007-06-19 04:46:16 +04:00
|
|
|
ompi_proc_t** procs = NULL;
|
2007-04-19 07:05:12 +04:00
|
|
|
size_t num_procs;
|
|
|
|
int ret, p;
|
2007-04-05 17:52:05 +04:00
|
|
|
|
|
|
|
if(OPAL_CRS_CHECKPOINT == state) {
|
2008-10-16 19:09:00 +04:00
|
|
|
if( opal_cr_timing_barrier_enabled ) {
|
|
|
|
OPAL_CR_SET_TIMER(OPAL_CR_TIMER_CRCPBR1);
|
|
|
|
orte_grpcomm.barrier();
|
|
|
|
}
|
|
|
|
|
|
|
|
OPAL_CR_SET_TIMER(OPAL_CR_TIMER_P2P0);
|
2007-04-05 17:52:05 +04:00
|
|
|
}
|
|
|
|
else if(OPAL_CRS_CONTINUE == state) {
|
2008-10-16 19:09:00 +04:00
|
|
|
first_continue_pass = !first_continue_pass;
|
|
|
|
|
|
|
|
if( !first_continue_pass ) {
|
|
|
|
if( opal_cr_timing_barrier_enabled ) {
|
|
|
|
OPAL_CR_SET_TIMER(OPAL_CR_TIMER_COREBR0);
|
|
|
|
orte_grpcomm.barrier();
|
|
|
|
}
|
|
|
|
OPAL_CR_SET_TIMER(OPAL_CR_TIMER_P2P2);
|
|
|
|
}
|
|
|
|
|
A number of C/R enhancements per RFC below:
http://www.open-mpi.org/community/lists/devel/2010/07/8240.php
Documentation:
http://osl.iu.edu/research/ft/
Major Changes:
--------------
* Added C/R-enabled Debugging support.
Enabled with the --enable-crdebug flag. See the following website for more information:
http://osl.iu.edu/research/ft/crdebug/
* Added Stable Storage (SStore) framework for checkpoint storage
* 'central' component does a direct to central storage save
* 'stage' component stages checkpoints to central storage while the application continues execution.
* 'stage' supports offline compression of checkpoints before moving (sstore_stage_compress)
* 'stage' supports local caching of checkpoints to improve automatic recovery (sstore_stage_caching)
* Added Compression (compress) framework to support
* Add two new ErrMgr recovery policies
* {{{crmig}}} C/R Process Migration
* {{{autor}}} C/R Automatic Recovery
* Added the {{{ompi-migrate}}} command line tool to support the {{{crmig}}} ErrMgr component
* Added CR MPI Ext functions (enable them with {{{--enable-mpi-ext=cr}}} configure option)
* {{{OMPI_CR_Checkpoint}}} (Fixes trac:2342)
* {{{OMPI_CR_Restart}}}
* {{{OMPI_CR_Migrate}}} (may need some more work for mapping rules)
* {{{OMPI_CR_INC_register_callback}}} (Fixes trac:2192)
* {{{OMPI_CR_Quiesce_start}}}
* {{{OMPI_CR_Quiesce_checkpoint}}}
* {{{OMPI_CR_Quiesce_end}}}
* {{{OMPI_CR_self_register_checkpoint_callback}}}
* {{{OMPI_CR_self_register_restart_callback}}}
* {{{OMPI_CR_self_register_continue_callback}}}
* The ErrMgr predicted_fault() interface has been changed to take an opal_list_t of ErrMgr defined types. This will allow us to better support a wider range of fault prediction services in the future.
* Add a progress meter to:
* FileM rsh (filem_rsh_process_meter)
* SnapC full (snapc_full_progress_meter)
* SStore stage (sstore_stage_progress_meter)
* Added 2 new command line options to ompi-restart
* --showme : Display the full command line that would have been exec'ed.
* --mpirun_opts : Command line options to pass directly to mpirun. (Fixes trac:2413)
* Deprecated some MCA params:
* crs_base_snapshot_dir deprecated, use sstore_stage_local_snapshot_dir
* snapc_base_global_snapshot_dir deprecated, use sstore_base_global_snapshot_dir
* snapc_base_global_shared deprecated, use sstore_stage_global_is_shared
* snapc_base_store_in_place deprecated, replaced with different components of SStore
* snapc_base_global_snapshot_ref deprecated, use sstore_base_global_snapshot_ref
* snapc_base_establish_global_snapshot_dir deprecated, never well supported
* snapc_full_skip_filem deprecated, use sstore_stage_skip_filem
Minor Changes:
--------------
* Fixes trac:1924 : {{{ompi-restart}}} now recognizes path prefixed checkpoint handles and does the right thing.
* Fixes trac:2097 : {{{ompi-info}}} should now report all available CRS components
* Fixes trac:2161 : Manual checkpoint movement. A user can 'mv' a checkpoint directory from the original location to another and still restart from it.
* Fixes trac:2208 : Honor various TMPDIR varaibles instead of forcing {{{/tmp}}}
* Move {{{ompi_cr_continue_like_restart}}} to {{{orte_cr_continue_like_restart}}} to be more flexible in where this should be set.
* opal_crs_base_metadata_write* functions have been moved to SStore to support a wider range of metadata handling functionality.
* Cleanup the CRS framework and components to work with the SStore framework.
* Cleanup the SnapC framework and components to work with the SStore framework (cleans up these code paths considerably).
* Add 'quiesce' hook to CRCP for a future enhancement.
* We now require a BLCR version that supports {{{cr_request_file()}}} or {{{cr_request_checkpoint()}}} in order to make the code more maintainable. Note that {{{cr_request_file}}} has been deprecated since 0.7.0, so we prefer to use {{{cr_request_checkpoint()}}}.
* Add optional application level INC callbacks (registered through the CR MPI Ext interface).
* Increase the {{{opal_cr_thread_sleep_wait}}} parameter to 1000 microseconds to make the C/R thread less aggressive.
* {{{opal-restart}}} now looks for cache directories before falling back on stable storage when asked.
* {{{opal-restart}}} also support local decompression before restarting
* {{{orte-checkpoint}}} now uses the SStore framework to work with the metadata
* {{{orte-restart}}} now uses the SStore framework to work with the metadata
* Remove the {{{orte-restart}}} preload option. This was removed since the user only needs to select the 'stage' component in order to support this functionality.
* Since the '-am' parameter is saved in the metadata, {{{ompi-restart}}} no longer hard codes {{{-am ft-enable-cr}}}.
* Fix {{{hnp}}} ErrMgr so that if a previous component in the stack has 'fixed' the problem, then it should be skipped.
* Make sure to decrement the number of 'num_local_procs' in the orted when one goes away.
* odls now checks the SStore framework to see if it needs to load any checkpoint files before launching (to support 'stage'). This separates the SStore logic from the --preload-[binary|files] options.
* Add unique IDs to the named pipes established between the orted and the app in SnapC. This is to better support migration and automatic recovery activities.
* Improve the checks for 'already checkpointing' error path.
* A a recovery output timer, to show how long it takes to restart a job
* Do a better job of cleaning up the old session directory on restart.
* Add a local module to the autor and crmig ErrMgr components. These small modules prevent the 'orted' component from attempting a local recovery (Which does not work for MPI apps at the moment)
* Add a fix for bounding the checkpointable region between MPI_Init and MPI_Finalize.
This commit was SVN r23587.
The following Trac tickets were found above:
Ticket 1924 --> https://svn.open-mpi.org/trac/ompi/ticket/1924
Ticket 2097 --> https://svn.open-mpi.org/trac/ompi/ticket/2097
Ticket 2161 --> https://svn.open-mpi.org/trac/ompi/ticket/2161
Ticket 2192 --> https://svn.open-mpi.org/trac/ompi/ticket/2192
Ticket 2208 --> https://svn.open-mpi.org/trac/ompi/ticket/2208
Ticket 2342 --> https://svn.open-mpi.org/trac/ompi/ticket/2342
Ticket 2413 --> https://svn.open-mpi.org/trac/ompi/ticket/2413
2010-08-11 00:51:11 +04:00
|
|
|
if( orte_cr_continue_like_restart && !first_continue_pass ) {
|
2008-10-16 19:09:00 +04:00
|
|
|
/*
|
|
|
|
* Get a list of processes
|
|
|
|
*/
|
|
|
|
procs = ompi_proc_all(&num_procs);
|
|
|
|
if(NULL == procs) {
|
|
|
|
return OMPI_ERR_OUT_OF_RESOURCE;
|
|
|
|
}
|
|
|
|
|
|
|
|
/*
|
|
|
|
* Refresh the proc structure, and publish our proc info in the modex.
|
|
|
|
* NOTE: Do *not* call ompi_proc_finalize as there are many places in
|
|
|
|
* the code that point to indv. procs in this strucutre. For our
|
|
|
|
* needs here we only need to fix up the modex, bml and pml
|
|
|
|
* references.
|
|
|
|
*/
|
|
|
|
if (OMPI_SUCCESS != (ret = ompi_proc_refresh())) {
|
|
|
|
opal_output(0,
|
|
|
|
"pml:ob1: ft_event(Restart): proc_refresh Failed %d",
|
|
|
|
ret);
|
2009-02-12 00:48:11 +03:00
|
|
|
for(p = 0; p < (int)num_procs; ++p) {
|
|
|
|
OBJ_RELEASE(procs[p]);
|
|
|
|
}
|
2008-10-16 19:09:00 +04:00
|
|
|
free (procs);
|
|
|
|
return ret;
|
|
|
|
}
|
|
|
|
}
|
2007-04-05 17:52:05 +04:00
|
|
|
}
|
2008-04-24 21:54:22 +04:00
|
|
|
else if(OPAL_CRS_RESTART_PRE == state ) {
|
|
|
|
/* Nothing here */
|
|
|
|
}
|
|
|
|
else if(OPAL_CRS_RESTART == state ) {
|
2007-04-19 07:05:12 +04:00
|
|
|
/*
|
|
|
|
* Get a list of processes
|
|
|
|
*/
|
|
|
|
procs = ompi_proc_all(&num_procs);
|
|
|
|
if(NULL == procs) {
|
|
|
|
return OMPI_ERR_OUT_OF_RESOURCE;
|
|
|
|
}
|
|
|
|
|
|
|
|
/*
|
|
|
|
* Clean out the modex information since it is invalid now.
|
2008-04-23 04:17:12 +04:00
|
|
|
* orte_grpcomm.purge_proc_attrs();
|
|
|
|
* This happens at the ORTE level, so doing it again here will cause
|
|
|
|
* some issues with socket caching.
|
2007-04-19 07:05:12 +04:00
|
|
|
*/
|
2008-04-23 04:17:12 +04:00
|
|
|
|
2007-04-19 07:05:12 +04:00
|
|
|
|
These changes were mostly captured in a prior RFC (except for #2 below) and are aimed specifically at improving startup performance and setting up the remaining modifications described in that RFC.
The commit has been tested for C/R and Cray operations, and on Odin (SLURM, rsh) and RoadRunner (TM). I tried to update all environments, but obviously could not test them. I know that Windows needs some work, and have highlighted what is know to be needed in the odls process component.
This represents a lot of work by Brian, Tim P, Josh, and myself, with much advice from Jeff and others. For posterity, I have appended a copy of the email describing the work that was done:
As we have repeatedly noted, the modex operation in MPI_Init is the single greatest consumer of time during startup. To-date, we have executed that operation as an ORTE stage gate that held the process until a startup message containing all required modex (and OOB contact info - see #3 below) info could be sent to it. Each process would send its data to the HNP's registry, which assembled and sent the message when all processes had reported in.
In addition, ORTE had taken responsibility for monitoring process status as it progressed through a series of "stage gates". The process reported its status at each gate, and ORTE would then send a "release" message once all procs had reported in.
The incoming changes revamp these procedures in three ways:
1. eliminating the ORTE stage gate system and cleanly delineating responsibility between the OMPI and ORTE layers for MPI init/finalize. The modex stage gate (STG1) has been replaced by a collective operation in the modex itself that performs an allgather on the required modex info. The allgather is implemented using the orte_grpcomm framework since the BTL's are not active at that point. At the moment, the grpcomm framework only has a "basic" component analogous to OMPI's "basic" coll framework - I would recommend that the MPI team create additional, more advanced components to improve performance of this step.
The other stage gates have been replaced by orte_grpcomm barrier functions. We tried to use MPI barriers instead (since the BTL's are active at that point), but - as we discussed on the telecon - these are not currently true barriers so the job would hang when we fell through while messages were still in process. Note that the grpcomm barrier doesn't actually resolve that problem, but Brian has pointed out that we are unlikely to ever see it violated. Again, you might want to spend a little time on an advanced barrier algorithm as the one in "basic" is very simplistic.
Summarizing this change: ORTE no longer tracks process state nor has direct responsibility for synchronizing jobs. This is now done via collective operations within the MPI layer, albeit using ORTE collective communication services. I -strongly- urge the MPI team to implement advanced collective algorithms to improve the performance of this critical procedure.
2. reducing the volume of data exchanged during modex. Data in the modex consisted of the process name, the name of the node where that process is located (expressed as a string), plus a string representation of all contact info. The nodename was required in order for the modex to determine if the process was local or not - in addition, some people like to have it to print pretty error messages when a connection failed.
The size of this data has been reduced in three ways:
(a) reducing the size of the process name itself. The process name consisted of two 32-bit fields for the jobid and vpid. This is far larger than any current system, or system likely to exist in the near future, can support. Accordingly, the default size of these fields has been reduced to 16-bits, which means you can have 32k procs in each of 32k jobs. Since the daemons must have a vpid, and we require one daemon/node, this also restricts the default configuration to 32k nodes.
To support any future "mega-clusters", a configuration option --enable-jumbo-apps has been added. This option increases the jobid and vpid field sizes to 32-bits. Someday, if necessary, someone can add yet another option to increase them to 64-bits, I suppose.
(b) replacing the string nodename with an integer nodeid. Since we have one daemon/node, the nodeid corresponds to the local daemon's vpid. This replaces an often lengthy string with only 2 (or at most 4) bytes, a substantial reduction.
(c) when the mca param requesting that nodenames be sent to support pretty error messages, a second mca param is now used to request FQDN - otherwise, the domain name is stripped (by default) from the message to save space. If someone wants to combine those into a single param somehow (perhaps with an argument?), they are welcome to do so - I didn't want to alter what people are already using.
While these may seem like small savings, they actually amount to a significant impact when aggregated across the entire modex operation. Since every proc must receive the modex data regardless of the collective used to send it, just reducing the size of the process name removes nearly 400MBytes of communication from a 32k proc job (admittedly, much of this comm may occur in parallel). So it does add up pretty quickly.
3. routing RML messages to reduce connections. The default messaging system remains point-to-point - i.e., each proc opens a socket to every proc it communicates with and sends its messages directly. A new option uses the orteds as routers - i.e., each proc only opens a single socket to its local orted. All messages are sent from the proc to the orted, which forwards the message to the orted on the node where the intended recipient proc is located - that orted then forwards the message to its local proc (the recipient). This greatly reduces the connection storm we have encountered during startup.
It also has the benefit of removing the sharing of every proc's OOB contact with every other proc. The orted routing tables are populated during launch since every orted gets a map of where every proc is being placed. Each proc, therefore, only needs to know the contact info for its local daemon, which is passed in via the environment when the proc is fork/exec'd by the daemon. This alone removes ~50 bytes/process of communication that was in the current STG1 startup message - so for our 32k proc job, this saves us roughly 32k*50 = 1.6MBytes sent to 32k procs = 51GBytes of messaging.
Note that you can use the new routing method by specifying -mca routed tree - if you so desire. This mode will become the default at some point in the future.
There are a few minor additional changes in the commit that I'll just note in passing:
* propagation of command line mca params to the orteds - fixes ticket #1073. See note there for details.
* requiring of "finalize" prior to "exit" for MPI procs - fixes ticket #1144. See note there for details.
* cleanup of some stale header files
This commit was SVN r16364.
2007-10-05 23:48:23 +04:00
|
|
|
/*
|
2008-02-28 04:57:57 +03:00
|
|
|
* Refresh the proc structure, and publish our proc info in the modex.
|
|
|
|
* NOTE: Do *not* call ompi_proc_finalize as there are many places in
|
|
|
|
* the code that point to indv. procs in this strucutre. For our
|
|
|
|
* needs here we only need to fix up the modex, bml and pml
|
|
|
|
* references.
|
These changes were mostly captured in a prior RFC (except for #2 below) and are aimed specifically at improving startup performance and setting up the remaining modifications described in that RFC.
The commit has been tested for C/R and Cray operations, and on Odin (SLURM, rsh) and RoadRunner (TM). I tried to update all environments, but obviously could not test them. I know that Windows needs some work, and have highlighted what is know to be needed in the odls process component.
This represents a lot of work by Brian, Tim P, Josh, and myself, with much advice from Jeff and others. For posterity, I have appended a copy of the email describing the work that was done:
As we have repeatedly noted, the modex operation in MPI_Init is the single greatest consumer of time during startup. To-date, we have executed that operation as an ORTE stage gate that held the process until a startup message containing all required modex (and OOB contact info - see #3 below) info could be sent to it. Each process would send its data to the HNP's registry, which assembled and sent the message when all processes had reported in.
In addition, ORTE had taken responsibility for monitoring process status as it progressed through a series of "stage gates". The process reported its status at each gate, and ORTE would then send a "release" message once all procs had reported in.
The incoming changes revamp these procedures in three ways:
1. eliminating the ORTE stage gate system and cleanly delineating responsibility between the OMPI and ORTE layers for MPI init/finalize. The modex stage gate (STG1) has been replaced by a collective operation in the modex itself that performs an allgather on the required modex info. The allgather is implemented using the orte_grpcomm framework since the BTL's are not active at that point. At the moment, the grpcomm framework only has a "basic" component analogous to OMPI's "basic" coll framework - I would recommend that the MPI team create additional, more advanced components to improve performance of this step.
The other stage gates have been replaced by orte_grpcomm barrier functions. We tried to use MPI barriers instead (since the BTL's are active at that point), but - as we discussed on the telecon - these are not currently true barriers so the job would hang when we fell through while messages were still in process. Note that the grpcomm barrier doesn't actually resolve that problem, but Brian has pointed out that we are unlikely to ever see it violated. Again, you might want to spend a little time on an advanced barrier algorithm as the one in "basic" is very simplistic.
Summarizing this change: ORTE no longer tracks process state nor has direct responsibility for synchronizing jobs. This is now done via collective operations within the MPI layer, albeit using ORTE collective communication services. I -strongly- urge the MPI team to implement advanced collective algorithms to improve the performance of this critical procedure.
2. reducing the volume of data exchanged during modex. Data in the modex consisted of the process name, the name of the node where that process is located (expressed as a string), plus a string representation of all contact info. The nodename was required in order for the modex to determine if the process was local or not - in addition, some people like to have it to print pretty error messages when a connection failed.
The size of this data has been reduced in three ways:
(a) reducing the size of the process name itself. The process name consisted of two 32-bit fields for the jobid and vpid. This is far larger than any current system, or system likely to exist in the near future, can support. Accordingly, the default size of these fields has been reduced to 16-bits, which means you can have 32k procs in each of 32k jobs. Since the daemons must have a vpid, and we require one daemon/node, this also restricts the default configuration to 32k nodes.
To support any future "mega-clusters", a configuration option --enable-jumbo-apps has been added. This option increases the jobid and vpid field sizes to 32-bits. Someday, if necessary, someone can add yet another option to increase them to 64-bits, I suppose.
(b) replacing the string nodename with an integer nodeid. Since we have one daemon/node, the nodeid corresponds to the local daemon's vpid. This replaces an often lengthy string with only 2 (or at most 4) bytes, a substantial reduction.
(c) when the mca param requesting that nodenames be sent to support pretty error messages, a second mca param is now used to request FQDN - otherwise, the domain name is stripped (by default) from the message to save space. If someone wants to combine those into a single param somehow (perhaps with an argument?), they are welcome to do so - I didn't want to alter what people are already using.
While these may seem like small savings, they actually amount to a significant impact when aggregated across the entire modex operation. Since every proc must receive the modex data regardless of the collective used to send it, just reducing the size of the process name removes nearly 400MBytes of communication from a 32k proc job (admittedly, much of this comm may occur in parallel). So it does add up pretty quickly.
3. routing RML messages to reduce connections. The default messaging system remains point-to-point - i.e., each proc opens a socket to every proc it communicates with and sends its messages directly. A new option uses the orteds as routers - i.e., each proc only opens a single socket to its local orted. All messages are sent from the proc to the orted, which forwards the message to the orted on the node where the intended recipient proc is located - that orted then forwards the message to its local proc (the recipient). This greatly reduces the connection storm we have encountered during startup.
It also has the benefit of removing the sharing of every proc's OOB contact with every other proc. The orted routing tables are populated during launch since every orted gets a map of where every proc is being placed. Each proc, therefore, only needs to know the contact info for its local daemon, which is passed in via the environment when the proc is fork/exec'd by the daemon. This alone removes ~50 bytes/process of communication that was in the current STG1 startup message - so for our 32k proc job, this saves us roughly 32k*50 = 1.6MBytes sent to 32k procs = 51GBytes of messaging.
Note that you can use the new routing method by specifying -mca routed tree - if you so desire. This mode will become the default at some point in the future.
There are a few minor additional changes in the commit that I'll just note in passing:
* propagation of command line mca params to the orteds - fixes ticket #1073. See note there for details.
* requiring of "finalize" prior to "exit" for MPI procs - fixes ticket #1144. See note there for details.
* cleanup of some stale header files
This commit was SVN r16364.
2007-10-05 23:48:23 +04:00
|
|
|
*/
|
2008-02-28 04:57:57 +03:00
|
|
|
if (OMPI_SUCCESS != (ret = ompi_proc_refresh())) {
|
2008-06-09 18:53:58 +04:00
|
|
|
opal_output(0,
|
2008-02-28 04:57:57 +03:00
|
|
|
"pml:ob1: ft_event(Restart): proc_refresh Failed %d",
|
These changes were mostly captured in a prior RFC (except for #2 below) and are aimed specifically at improving startup performance and setting up the remaining modifications described in that RFC.
The commit has been tested for C/R and Cray operations, and on Odin (SLURM, rsh) and RoadRunner (TM). I tried to update all environments, but obviously could not test them. I know that Windows needs some work, and have highlighted what is know to be needed in the odls process component.
This represents a lot of work by Brian, Tim P, Josh, and myself, with much advice from Jeff and others. For posterity, I have appended a copy of the email describing the work that was done:
As we have repeatedly noted, the modex operation in MPI_Init is the single greatest consumer of time during startup. To-date, we have executed that operation as an ORTE stage gate that held the process until a startup message containing all required modex (and OOB contact info - see #3 below) info could be sent to it. Each process would send its data to the HNP's registry, which assembled and sent the message when all processes had reported in.
In addition, ORTE had taken responsibility for monitoring process status as it progressed through a series of "stage gates". The process reported its status at each gate, and ORTE would then send a "release" message once all procs had reported in.
The incoming changes revamp these procedures in three ways:
1. eliminating the ORTE stage gate system and cleanly delineating responsibility between the OMPI and ORTE layers for MPI init/finalize. The modex stage gate (STG1) has been replaced by a collective operation in the modex itself that performs an allgather on the required modex info. The allgather is implemented using the orte_grpcomm framework since the BTL's are not active at that point. At the moment, the grpcomm framework only has a "basic" component analogous to OMPI's "basic" coll framework - I would recommend that the MPI team create additional, more advanced components to improve performance of this step.
The other stage gates have been replaced by orte_grpcomm barrier functions. We tried to use MPI barriers instead (since the BTL's are active at that point), but - as we discussed on the telecon - these are not currently true barriers so the job would hang when we fell through while messages were still in process. Note that the grpcomm barrier doesn't actually resolve that problem, but Brian has pointed out that we are unlikely to ever see it violated. Again, you might want to spend a little time on an advanced barrier algorithm as the one in "basic" is very simplistic.
Summarizing this change: ORTE no longer tracks process state nor has direct responsibility for synchronizing jobs. This is now done via collective operations within the MPI layer, albeit using ORTE collective communication services. I -strongly- urge the MPI team to implement advanced collective algorithms to improve the performance of this critical procedure.
2. reducing the volume of data exchanged during modex. Data in the modex consisted of the process name, the name of the node where that process is located (expressed as a string), plus a string representation of all contact info. The nodename was required in order for the modex to determine if the process was local or not - in addition, some people like to have it to print pretty error messages when a connection failed.
The size of this data has been reduced in three ways:
(a) reducing the size of the process name itself. The process name consisted of two 32-bit fields for the jobid and vpid. This is far larger than any current system, or system likely to exist in the near future, can support. Accordingly, the default size of these fields has been reduced to 16-bits, which means you can have 32k procs in each of 32k jobs. Since the daemons must have a vpid, and we require one daemon/node, this also restricts the default configuration to 32k nodes.
To support any future "mega-clusters", a configuration option --enable-jumbo-apps has been added. This option increases the jobid and vpid field sizes to 32-bits. Someday, if necessary, someone can add yet another option to increase them to 64-bits, I suppose.
(b) replacing the string nodename with an integer nodeid. Since we have one daemon/node, the nodeid corresponds to the local daemon's vpid. This replaces an often lengthy string with only 2 (or at most 4) bytes, a substantial reduction.
(c) when the mca param requesting that nodenames be sent to support pretty error messages, a second mca param is now used to request FQDN - otherwise, the domain name is stripped (by default) from the message to save space. If someone wants to combine those into a single param somehow (perhaps with an argument?), they are welcome to do so - I didn't want to alter what people are already using.
While these may seem like small savings, they actually amount to a significant impact when aggregated across the entire modex operation. Since every proc must receive the modex data regardless of the collective used to send it, just reducing the size of the process name removes nearly 400MBytes of communication from a 32k proc job (admittedly, much of this comm may occur in parallel). So it does add up pretty quickly.
3. routing RML messages to reduce connections. The default messaging system remains point-to-point - i.e., each proc opens a socket to every proc it communicates with and sends its messages directly. A new option uses the orteds as routers - i.e., each proc only opens a single socket to its local orted. All messages are sent from the proc to the orted, which forwards the message to the orted on the node where the intended recipient proc is located - that orted then forwards the message to its local proc (the recipient). This greatly reduces the connection storm we have encountered during startup.
It also has the benefit of removing the sharing of every proc's OOB contact with every other proc. The orted routing tables are populated during launch since every orted gets a map of where every proc is being placed. Each proc, therefore, only needs to know the contact info for its local daemon, which is passed in via the environment when the proc is fork/exec'd by the daemon. This alone removes ~50 bytes/process of communication that was in the current STG1 startup message - so for our 32k proc job, this saves us roughly 32k*50 = 1.6MBytes sent to 32k procs = 51GBytes of messaging.
Note that you can use the new routing method by specifying -mca routed tree - if you so desire. This mode will become the default at some point in the future.
There are a few minor additional changes in the commit that I'll just note in passing:
* propagation of command line mca params to the orteds - fixes ticket #1073. See note there for details.
* requiring of "finalize" prior to "exit" for MPI procs - fixes ticket #1144. See note there for details.
* cleanup of some stale header files
This commit was SVN r16364.
2007-10-05 23:48:23 +04:00
|
|
|
ret);
|
2009-02-12 00:48:11 +03:00
|
|
|
for(p = 0; p < (int)num_procs; ++p) {
|
|
|
|
OBJ_RELEASE(procs[p]);
|
|
|
|
}
|
2008-08-06 12:04:27 +04:00
|
|
|
free (procs);
|
These changes were mostly captured in a prior RFC (except for #2 below) and are aimed specifically at improving startup performance and setting up the remaining modifications described in that RFC.
The commit has been tested for C/R and Cray operations, and on Odin (SLURM, rsh) and RoadRunner (TM). I tried to update all environments, but obviously could not test them. I know that Windows needs some work, and have highlighted what is know to be needed in the odls process component.
This represents a lot of work by Brian, Tim P, Josh, and myself, with much advice from Jeff and others. For posterity, I have appended a copy of the email describing the work that was done:
As we have repeatedly noted, the modex operation in MPI_Init is the single greatest consumer of time during startup. To-date, we have executed that operation as an ORTE stage gate that held the process until a startup message containing all required modex (and OOB contact info - see #3 below) info could be sent to it. Each process would send its data to the HNP's registry, which assembled and sent the message when all processes had reported in.
In addition, ORTE had taken responsibility for monitoring process status as it progressed through a series of "stage gates". The process reported its status at each gate, and ORTE would then send a "release" message once all procs had reported in.
The incoming changes revamp these procedures in three ways:
1. eliminating the ORTE stage gate system and cleanly delineating responsibility between the OMPI and ORTE layers for MPI init/finalize. The modex stage gate (STG1) has been replaced by a collective operation in the modex itself that performs an allgather on the required modex info. The allgather is implemented using the orte_grpcomm framework since the BTL's are not active at that point. At the moment, the grpcomm framework only has a "basic" component analogous to OMPI's "basic" coll framework - I would recommend that the MPI team create additional, more advanced components to improve performance of this step.
The other stage gates have been replaced by orte_grpcomm barrier functions. We tried to use MPI barriers instead (since the BTL's are active at that point), but - as we discussed on the telecon - these are not currently true barriers so the job would hang when we fell through while messages were still in process. Note that the grpcomm barrier doesn't actually resolve that problem, but Brian has pointed out that we are unlikely to ever see it violated. Again, you might want to spend a little time on an advanced barrier algorithm as the one in "basic" is very simplistic.
Summarizing this change: ORTE no longer tracks process state nor has direct responsibility for synchronizing jobs. This is now done via collective operations within the MPI layer, albeit using ORTE collective communication services. I -strongly- urge the MPI team to implement advanced collective algorithms to improve the performance of this critical procedure.
2. reducing the volume of data exchanged during modex. Data in the modex consisted of the process name, the name of the node where that process is located (expressed as a string), plus a string representation of all contact info. The nodename was required in order for the modex to determine if the process was local or not - in addition, some people like to have it to print pretty error messages when a connection failed.
The size of this data has been reduced in three ways:
(a) reducing the size of the process name itself. The process name consisted of two 32-bit fields for the jobid and vpid. This is far larger than any current system, or system likely to exist in the near future, can support. Accordingly, the default size of these fields has been reduced to 16-bits, which means you can have 32k procs in each of 32k jobs. Since the daemons must have a vpid, and we require one daemon/node, this also restricts the default configuration to 32k nodes.
To support any future "mega-clusters", a configuration option --enable-jumbo-apps has been added. This option increases the jobid and vpid field sizes to 32-bits. Someday, if necessary, someone can add yet another option to increase them to 64-bits, I suppose.
(b) replacing the string nodename with an integer nodeid. Since we have one daemon/node, the nodeid corresponds to the local daemon's vpid. This replaces an often lengthy string with only 2 (or at most 4) bytes, a substantial reduction.
(c) when the mca param requesting that nodenames be sent to support pretty error messages, a second mca param is now used to request FQDN - otherwise, the domain name is stripped (by default) from the message to save space. If someone wants to combine those into a single param somehow (perhaps with an argument?), they are welcome to do so - I didn't want to alter what people are already using.
While these may seem like small savings, they actually amount to a significant impact when aggregated across the entire modex operation. Since every proc must receive the modex data regardless of the collective used to send it, just reducing the size of the process name removes nearly 400MBytes of communication from a 32k proc job (admittedly, much of this comm may occur in parallel). So it does add up pretty quickly.
3. routing RML messages to reduce connections. The default messaging system remains point-to-point - i.e., each proc opens a socket to every proc it communicates with and sends its messages directly. A new option uses the orteds as routers - i.e., each proc only opens a single socket to its local orted. All messages are sent from the proc to the orted, which forwards the message to the orted on the node where the intended recipient proc is located - that orted then forwards the message to its local proc (the recipient). This greatly reduces the connection storm we have encountered during startup.
It also has the benefit of removing the sharing of every proc's OOB contact with every other proc. The orted routing tables are populated during launch since every orted gets a map of where every proc is being placed. Each proc, therefore, only needs to know the contact info for its local daemon, which is passed in via the environment when the proc is fork/exec'd by the daemon. This alone removes ~50 bytes/process of communication that was in the current STG1 startup message - so for our 32k proc job, this saves us roughly 32k*50 = 1.6MBytes sent to 32k procs = 51GBytes of messaging.
Note that you can use the new routing method by specifying -mca routed tree - if you so desire. This mode will become the default at some point in the future.
There are a few minor additional changes in the commit that I'll just note in passing:
* propagation of command line mca params to the orteds - fixes ticket #1073. See note there for details.
* requiring of "finalize" prior to "exit" for MPI procs - fixes ticket #1144. See note there for details.
* cleanup of some stale header files
This commit was SVN r16364.
2007-10-05 23:48:23 +04:00
|
|
|
return ret;
|
|
|
|
}
|
2007-04-05 17:52:05 +04:00
|
|
|
}
|
|
|
|
else if(OPAL_CRS_TERM == state ) {
|
|
|
|
;
|
|
|
|
}
|
|
|
|
else {
|
|
|
|
;
|
|
|
|
}
|
|
|
|
|
|
|
|
/* Call the BML
|
|
|
|
* BML is expected to call ft_event in
|
|
|
|
* - BTL(s)
|
|
|
|
* - MPool(s)
|
|
|
|
*/
|
|
|
|
if( OMPI_SUCCESS != (ret = mca_bml.bml_ft_event(state))) {
|
2008-06-09 18:53:58 +04:00
|
|
|
opal_output(0, "pml:base: ft_event: BML ft_event function failed: %d\n",
|
2007-04-05 17:52:05 +04:00
|
|
|
ret);
|
|
|
|
}
|
|
|
|
|
|
|
|
if(OPAL_CRS_CHECKPOINT == state) {
|
2008-10-16 19:09:00 +04:00
|
|
|
OPAL_CR_SET_TIMER(OPAL_CR_TIMER_P2P1);
|
|
|
|
|
|
|
|
if( opal_cr_timing_barrier_enabled ) {
|
|
|
|
OPAL_CR_SET_TIMER(OPAL_CR_TIMER_P2PBR0);
|
|
|
|
/* JJH Cannot barrier here due to progress engine -- orte_grpcomm.barrier();*/
|
|
|
|
}
|
2007-04-05 17:52:05 +04:00
|
|
|
}
|
|
|
|
else if(OPAL_CRS_CONTINUE == state) {
|
2008-10-16 19:09:00 +04:00
|
|
|
if( !first_continue_pass ) {
|
|
|
|
if( opal_cr_timing_barrier_enabled ) {
|
|
|
|
OPAL_CR_SET_TIMER(OPAL_CR_TIMER_P2PBR1);
|
|
|
|
orte_grpcomm.barrier();
|
|
|
|
}
|
|
|
|
OPAL_CR_SET_TIMER(OPAL_CR_TIMER_P2P3);
|
|
|
|
}
|
|
|
|
|
A number of C/R enhancements per RFC below:
http://www.open-mpi.org/community/lists/devel/2010/07/8240.php
Documentation:
http://osl.iu.edu/research/ft/
Major Changes:
--------------
* Added C/R-enabled Debugging support.
Enabled with the --enable-crdebug flag. See the following website for more information:
http://osl.iu.edu/research/ft/crdebug/
* Added Stable Storage (SStore) framework for checkpoint storage
* 'central' component does a direct to central storage save
* 'stage' component stages checkpoints to central storage while the application continues execution.
* 'stage' supports offline compression of checkpoints before moving (sstore_stage_compress)
* 'stage' supports local caching of checkpoints to improve automatic recovery (sstore_stage_caching)
* Added Compression (compress) framework to support
* Add two new ErrMgr recovery policies
* {{{crmig}}} C/R Process Migration
* {{{autor}}} C/R Automatic Recovery
* Added the {{{ompi-migrate}}} command line tool to support the {{{crmig}}} ErrMgr component
* Added CR MPI Ext functions (enable them with {{{--enable-mpi-ext=cr}}} configure option)
* {{{OMPI_CR_Checkpoint}}} (Fixes trac:2342)
* {{{OMPI_CR_Restart}}}
* {{{OMPI_CR_Migrate}}} (may need some more work for mapping rules)
* {{{OMPI_CR_INC_register_callback}}} (Fixes trac:2192)
* {{{OMPI_CR_Quiesce_start}}}
* {{{OMPI_CR_Quiesce_checkpoint}}}
* {{{OMPI_CR_Quiesce_end}}}
* {{{OMPI_CR_self_register_checkpoint_callback}}}
* {{{OMPI_CR_self_register_restart_callback}}}
* {{{OMPI_CR_self_register_continue_callback}}}
* The ErrMgr predicted_fault() interface has been changed to take an opal_list_t of ErrMgr defined types. This will allow us to better support a wider range of fault prediction services in the future.
* Add a progress meter to:
* FileM rsh (filem_rsh_process_meter)
* SnapC full (snapc_full_progress_meter)
* SStore stage (sstore_stage_progress_meter)
* Added 2 new command line options to ompi-restart
* --showme : Display the full command line that would have been exec'ed.
* --mpirun_opts : Command line options to pass directly to mpirun. (Fixes trac:2413)
* Deprecated some MCA params:
* crs_base_snapshot_dir deprecated, use sstore_stage_local_snapshot_dir
* snapc_base_global_snapshot_dir deprecated, use sstore_base_global_snapshot_dir
* snapc_base_global_shared deprecated, use sstore_stage_global_is_shared
* snapc_base_store_in_place deprecated, replaced with different components of SStore
* snapc_base_global_snapshot_ref deprecated, use sstore_base_global_snapshot_ref
* snapc_base_establish_global_snapshot_dir deprecated, never well supported
* snapc_full_skip_filem deprecated, use sstore_stage_skip_filem
Minor Changes:
--------------
* Fixes trac:1924 : {{{ompi-restart}}} now recognizes path prefixed checkpoint handles and does the right thing.
* Fixes trac:2097 : {{{ompi-info}}} should now report all available CRS components
* Fixes trac:2161 : Manual checkpoint movement. A user can 'mv' a checkpoint directory from the original location to another and still restart from it.
* Fixes trac:2208 : Honor various TMPDIR varaibles instead of forcing {{{/tmp}}}
* Move {{{ompi_cr_continue_like_restart}}} to {{{orte_cr_continue_like_restart}}} to be more flexible in where this should be set.
* opal_crs_base_metadata_write* functions have been moved to SStore to support a wider range of metadata handling functionality.
* Cleanup the CRS framework and components to work with the SStore framework.
* Cleanup the SnapC framework and components to work with the SStore framework (cleans up these code paths considerably).
* Add 'quiesce' hook to CRCP for a future enhancement.
* We now require a BLCR version that supports {{{cr_request_file()}}} or {{{cr_request_checkpoint()}}} in order to make the code more maintainable. Note that {{{cr_request_file}}} has been deprecated since 0.7.0, so we prefer to use {{{cr_request_checkpoint()}}}.
* Add optional application level INC callbacks (registered through the CR MPI Ext interface).
* Increase the {{{opal_cr_thread_sleep_wait}}} parameter to 1000 microseconds to make the C/R thread less aggressive.
* {{{opal-restart}}} now looks for cache directories before falling back on stable storage when asked.
* {{{opal-restart}}} also support local decompression before restarting
* {{{orte-checkpoint}}} now uses the SStore framework to work with the metadata
* {{{orte-restart}}} now uses the SStore framework to work with the metadata
* Remove the {{{orte-restart}}} preload option. This was removed since the user only needs to select the 'stage' component in order to support this functionality.
* Since the '-am' parameter is saved in the metadata, {{{ompi-restart}}} no longer hard codes {{{-am ft-enable-cr}}}.
* Fix {{{hnp}}} ErrMgr so that if a previous component in the stack has 'fixed' the problem, then it should be skipped.
* Make sure to decrement the number of 'num_local_procs' in the orted when one goes away.
* odls now checks the SStore framework to see if it needs to load any checkpoint files before launching (to support 'stage'). This separates the SStore logic from the --preload-[binary|files] options.
* Add unique IDs to the named pipes established between the orted and the app in SnapC. This is to better support migration and automatic recovery activities.
* Improve the checks for 'already checkpointing' error path.
* A a recovery output timer, to show how long it takes to restart a job
* Do a better job of cleaning up the old session directory on restart.
* Add a local module to the autor and crmig ErrMgr components. These small modules prevent the 'orted' component from attempting a local recovery (Which does not work for MPI apps at the moment)
* Add a fix for bounding the checkpointable region between MPI_Init and MPI_Finalize.
This commit was SVN r23587.
The following Trac tickets were found above:
Ticket 1924 --> https://svn.open-mpi.org/trac/ompi/ticket/1924
Ticket 2097 --> https://svn.open-mpi.org/trac/ompi/ticket/2097
Ticket 2161 --> https://svn.open-mpi.org/trac/ompi/ticket/2161
Ticket 2192 --> https://svn.open-mpi.org/trac/ompi/ticket/2192
Ticket 2208 --> https://svn.open-mpi.org/trac/ompi/ticket/2208
Ticket 2342 --> https://svn.open-mpi.org/trac/ompi/ticket/2342
Ticket 2413 --> https://svn.open-mpi.org/trac/ompi/ticket/2413
2010-08-11 00:51:11 +04:00
|
|
|
if( orte_cr_continue_like_restart && !first_continue_pass ) {
|
2008-10-16 19:09:00 +04:00
|
|
|
/*
|
|
|
|
* Exchange the modex information once again.
|
|
|
|
* BTLs will have republished their modex information.
|
|
|
|
*/
|
|
|
|
if (OMPI_SUCCESS != (ret = orte_grpcomm.modex(NULL))) {
|
|
|
|
opal_output(0,
|
|
|
|
"pml:ob1: ft_event(Restart): Failed orte_grpcomm.modex() = %d",
|
|
|
|
ret);
|
|
|
|
return ret;
|
|
|
|
}
|
|
|
|
|
|
|
|
/*
|
|
|
|
* Startup the PML stack now that the modex is running again
|
|
|
|
* Add the new procs (BTLs redo modex recv's)
|
|
|
|
*/
|
|
|
|
if( OMPI_SUCCESS != (ret = mca_pml_ob1_add_procs(procs, num_procs) ) ) {
|
|
|
|
opal_output(0, "pml:ob1: ft_event(Restart): Failed in add_procs (%d)", ret);
|
|
|
|
return ret;
|
|
|
|
}
|
|
|
|
|
|
|
|
/* Is this barrier necessary ? JJH */
|
|
|
|
if (OMPI_SUCCESS != (ret = orte_grpcomm.barrier())) {
|
|
|
|
opal_output(0, "pml:ob1: ft_event(Restart): Failed in orte_grpcomm.barrier (%d)", ret);
|
|
|
|
return ret;
|
|
|
|
}
|
|
|
|
|
|
|
|
if( NULL != procs ) {
|
|
|
|
for(p = 0; p < (int)num_procs; ++p) {
|
|
|
|
OBJ_RELEASE(procs[p]);
|
|
|
|
}
|
|
|
|
free(procs);
|
|
|
|
procs = NULL;
|
|
|
|
}
|
|
|
|
}
|
|
|
|
if( !first_continue_pass ) {
|
|
|
|
if( opal_cr_timing_barrier_enabled ) {
|
|
|
|
OPAL_CR_SET_TIMER(OPAL_CR_TIMER_P2PBR2);
|
|
|
|
orte_grpcomm.barrier();
|
|
|
|
}
|
|
|
|
OPAL_CR_SET_TIMER(OPAL_CR_TIMER_CRCP1);
|
|
|
|
}
|
2007-04-05 17:52:05 +04:00
|
|
|
}
|
2008-04-24 21:54:22 +04:00
|
|
|
else if(OPAL_CRS_RESTART_PRE == state ) {
|
|
|
|
/* Nothing here */
|
|
|
|
}
|
|
|
|
else if(OPAL_CRS_RESTART == state ) {
|
2007-04-19 07:05:12 +04:00
|
|
|
/*
|
2008-02-28 04:57:57 +03:00
|
|
|
* Exchange the modex information once again.
|
|
|
|
* BTLs will have republished their modex information.
|
These changes were mostly captured in a prior RFC (except for #2 below) and are aimed specifically at improving startup performance and setting up the remaining modifications described in that RFC.
The commit has been tested for C/R and Cray operations, and on Odin (SLURM, rsh) and RoadRunner (TM). I tried to update all environments, but obviously could not test them. I know that Windows needs some work, and have highlighted what is know to be needed in the odls process component.
This represents a lot of work by Brian, Tim P, Josh, and myself, with much advice from Jeff and others. For posterity, I have appended a copy of the email describing the work that was done:
As we have repeatedly noted, the modex operation in MPI_Init is the single greatest consumer of time during startup. To-date, we have executed that operation as an ORTE stage gate that held the process until a startup message containing all required modex (and OOB contact info - see #3 below) info could be sent to it. Each process would send its data to the HNP's registry, which assembled and sent the message when all processes had reported in.
In addition, ORTE had taken responsibility for monitoring process status as it progressed through a series of "stage gates". The process reported its status at each gate, and ORTE would then send a "release" message once all procs had reported in.
The incoming changes revamp these procedures in three ways:
1. eliminating the ORTE stage gate system and cleanly delineating responsibility between the OMPI and ORTE layers for MPI init/finalize. The modex stage gate (STG1) has been replaced by a collective operation in the modex itself that performs an allgather on the required modex info. The allgather is implemented using the orte_grpcomm framework since the BTL's are not active at that point. At the moment, the grpcomm framework only has a "basic" component analogous to OMPI's "basic" coll framework - I would recommend that the MPI team create additional, more advanced components to improve performance of this step.
The other stage gates have been replaced by orte_grpcomm barrier functions. We tried to use MPI barriers instead (since the BTL's are active at that point), but - as we discussed on the telecon - these are not currently true barriers so the job would hang when we fell through while messages were still in process. Note that the grpcomm barrier doesn't actually resolve that problem, but Brian has pointed out that we are unlikely to ever see it violated. Again, you might want to spend a little time on an advanced barrier algorithm as the one in "basic" is very simplistic.
Summarizing this change: ORTE no longer tracks process state nor has direct responsibility for synchronizing jobs. This is now done via collective operations within the MPI layer, albeit using ORTE collective communication services. I -strongly- urge the MPI team to implement advanced collective algorithms to improve the performance of this critical procedure.
2. reducing the volume of data exchanged during modex. Data in the modex consisted of the process name, the name of the node where that process is located (expressed as a string), plus a string representation of all contact info. The nodename was required in order for the modex to determine if the process was local or not - in addition, some people like to have it to print pretty error messages when a connection failed.
The size of this data has been reduced in three ways:
(a) reducing the size of the process name itself. The process name consisted of two 32-bit fields for the jobid and vpid. This is far larger than any current system, or system likely to exist in the near future, can support. Accordingly, the default size of these fields has been reduced to 16-bits, which means you can have 32k procs in each of 32k jobs. Since the daemons must have a vpid, and we require one daemon/node, this also restricts the default configuration to 32k nodes.
To support any future "mega-clusters", a configuration option --enable-jumbo-apps has been added. This option increases the jobid and vpid field sizes to 32-bits. Someday, if necessary, someone can add yet another option to increase them to 64-bits, I suppose.
(b) replacing the string nodename with an integer nodeid. Since we have one daemon/node, the nodeid corresponds to the local daemon's vpid. This replaces an often lengthy string with only 2 (or at most 4) bytes, a substantial reduction.
(c) when the mca param requesting that nodenames be sent to support pretty error messages, a second mca param is now used to request FQDN - otherwise, the domain name is stripped (by default) from the message to save space. If someone wants to combine those into a single param somehow (perhaps with an argument?), they are welcome to do so - I didn't want to alter what people are already using.
While these may seem like small savings, they actually amount to a significant impact when aggregated across the entire modex operation. Since every proc must receive the modex data regardless of the collective used to send it, just reducing the size of the process name removes nearly 400MBytes of communication from a 32k proc job (admittedly, much of this comm may occur in parallel). So it does add up pretty quickly.
3. routing RML messages to reduce connections. The default messaging system remains point-to-point - i.e., each proc opens a socket to every proc it communicates with and sends its messages directly. A new option uses the orteds as routers - i.e., each proc only opens a single socket to its local orted. All messages are sent from the proc to the orted, which forwards the message to the orted on the node where the intended recipient proc is located - that orted then forwards the message to its local proc (the recipient). This greatly reduces the connection storm we have encountered during startup.
It also has the benefit of removing the sharing of every proc's OOB contact with every other proc. The orted routing tables are populated during launch since every orted gets a map of where every proc is being placed. Each proc, therefore, only needs to know the contact info for its local daemon, which is passed in via the environment when the proc is fork/exec'd by the daemon. This alone removes ~50 bytes/process of communication that was in the current STG1 startup message - so for our 32k proc job, this saves us roughly 32k*50 = 1.6MBytes sent to 32k procs = 51GBytes of messaging.
Note that you can use the new routing method by specifying -mca routed tree - if you so desire. This mode will become the default at some point in the future.
There are a few minor additional changes in the commit that I'll just note in passing:
* propagation of command line mca params to the orteds - fixes ticket #1073. See note there for details.
* requiring of "finalize" prior to "exit" for MPI procs - fixes ticket #1144. See note there for details.
* cleanup of some stale header files
This commit was SVN r16364.
2007-10-05 23:48:23 +04:00
|
|
|
*/
|
2008-02-28 04:57:57 +03:00
|
|
|
if (OMPI_SUCCESS != (ret = orte_grpcomm.modex(NULL))) {
|
2008-06-09 18:53:58 +04:00
|
|
|
opal_output(0,
|
2008-02-28 04:57:57 +03:00
|
|
|
"pml:ob1: ft_event(Restart): Failed orte_grpcomm.modex() = %d",
|
2007-04-19 07:05:12 +04:00
|
|
|
ret);
|
|
|
|
return ret;
|
|
|
|
}
|
2008-05-01 21:48:13 +04:00
|
|
|
|
2007-04-19 07:05:12 +04:00
|
|
|
/*
|
These changes were mostly captured in a prior RFC (except for #2 below) and are aimed specifically at improving startup performance and setting up the remaining modifications described in that RFC.
The commit has been tested for C/R and Cray operations, and on Odin (SLURM, rsh) and RoadRunner (TM). I tried to update all environments, but obviously could not test them. I know that Windows needs some work, and have highlighted what is know to be needed in the odls process component.
This represents a lot of work by Brian, Tim P, Josh, and myself, with much advice from Jeff and others. For posterity, I have appended a copy of the email describing the work that was done:
As we have repeatedly noted, the modex operation in MPI_Init is the single greatest consumer of time during startup. To-date, we have executed that operation as an ORTE stage gate that held the process until a startup message containing all required modex (and OOB contact info - see #3 below) info could be sent to it. Each process would send its data to the HNP's registry, which assembled and sent the message when all processes had reported in.
In addition, ORTE had taken responsibility for monitoring process status as it progressed through a series of "stage gates". The process reported its status at each gate, and ORTE would then send a "release" message once all procs had reported in.
The incoming changes revamp these procedures in three ways:
1. eliminating the ORTE stage gate system and cleanly delineating responsibility between the OMPI and ORTE layers for MPI init/finalize. The modex stage gate (STG1) has been replaced by a collective operation in the modex itself that performs an allgather on the required modex info. The allgather is implemented using the orte_grpcomm framework since the BTL's are not active at that point. At the moment, the grpcomm framework only has a "basic" component analogous to OMPI's "basic" coll framework - I would recommend that the MPI team create additional, more advanced components to improve performance of this step.
The other stage gates have been replaced by orte_grpcomm barrier functions. We tried to use MPI barriers instead (since the BTL's are active at that point), but - as we discussed on the telecon - these are not currently true barriers so the job would hang when we fell through while messages were still in process. Note that the grpcomm barrier doesn't actually resolve that problem, but Brian has pointed out that we are unlikely to ever see it violated. Again, you might want to spend a little time on an advanced barrier algorithm as the one in "basic" is very simplistic.
Summarizing this change: ORTE no longer tracks process state nor has direct responsibility for synchronizing jobs. This is now done via collective operations within the MPI layer, albeit using ORTE collective communication services. I -strongly- urge the MPI team to implement advanced collective algorithms to improve the performance of this critical procedure.
2. reducing the volume of data exchanged during modex. Data in the modex consisted of the process name, the name of the node where that process is located (expressed as a string), plus a string representation of all contact info. The nodename was required in order for the modex to determine if the process was local or not - in addition, some people like to have it to print pretty error messages when a connection failed.
The size of this data has been reduced in three ways:
(a) reducing the size of the process name itself. The process name consisted of two 32-bit fields for the jobid and vpid. This is far larger than any current system, or system likely to exist in the near future, can support. Accordingly, the default size of these fields has been reduced to 16-bits, which means you can have 32k procs in each of 32k jobs. Since the daemons must have a vpid, and we require one daemon/node, this also restricts the default configuration to 32k nodes.
To support any future "mega-clusters", a configuration option --enable-jumbo-apps has been added. This option increases the jobid and vpid field sizes to 32-bits. Someday, if necessary, someone can add yet another option to increase them to 64-bits, I suppose.
(b) replacing the string nodename with an integer nodeid. Since we have one daemon/node, the nodeid corresponds to the local daemon's vpid. This replaces an often lengthy string with only 2 (or at most 4) bytes, a substantial reduction.
(c) when the mca param requesting that nodenames be sent to support pretty error messages, a second mca param is now used to request FQDN - otherwise, the domain name is stripped (by default) from the message to save space. If someone wants to combine those into a single param somehow (perhaps with an argument?), they are welcome to do so - I didn't want to alter what people are already using.
While these may seem like small savings, they actually amount to a significant impact when aggregated across the entire modex operation. Since every proc must receive the modex data regardless of the collective used to send it, just reducing the size of the process name removes nearly 400MBytes of communication from a 32k proc job (admittedly, much of this comm may occur in parallel). So it does add up pretty quickly.
3. routing RML messages to reduce connections. The default messaging system remains point-to-point - i.e., each proc opens a socket to every proc it communicates with and sends its messages directly. A new option uses the orteds as routers - i.e., each proc only opens a single socket to its local orted. All messages are sent from the proc to the orted, which forwards the message to the orted on the node where the intended recipient proc is located - that orted then forwards the message to its local proc (the recipient). This greatly reduces the connection storm we have encountered during startup.
It also has the benefit of removing the sharing of every proc's OOB contact with every other proc. The orted routing tables are populated during launch since every orted gets a map of where every proc is being placed. Each proc, therefore, only needs to know the contact info for its local daemon, which is passed in via the environment when the proc is fork/exec'd by the daemon. This alone removes ~50 bytes/process of communication that was in the current STG1 startup message - so for our 32k proc job, this saves us roughly 32k*50 = 1.6MBytes sent to 32k procs = 51GBytes of messaging.
Note that you can use the new routing method by specifying -mca routed tree - if you so desire. This mode will become the default at some point in the future.
There are a few minor additional changes in the commit that I'll just note in passing:
* propagation of command line mca params to the orteds - fixes ticket #1073. See note there for details.
* requiring of "finalize" prior to "exit" for MPI procs - fixes ticket #1144. See note there for details.
* cleanup of some stale header files
This commit was SVN r16364.
2007-10-05 23:48:23 +04:00
|
|
|
* Startup the PML stack now that the modex is running again
|
2008-02-28 04:57:57 +03:00
|
|
|
* Add the new procs (BTLs redo modex recv's)
|
2007-04-19 07:05:12 +04:00
|
|
|
*/
|
These changes were mostly captured in a prior RFC (except for #2 below) and are aimed specifically at improving startup performance and setting up the remaining modifications described in that RFC.
The commit has been tested for C/R and Cray operations, and on Odin (SLURM, rsh) and RoadRunner (TM). I tried to update all environments, but obviously could not test them. I know that Windows needs some work, and have highlighted what is know to be needed in the odls process component.
This represents a lot of work by Brian, Tim P, Josh, and myself, with much advice from Jeff and others. For posterity, I have appended a copy of the email describing the work that was done:
As we have repeatedly noted, the modex operation in MPI_Init is the single greatest consumer of time during startup. To-date, we have executed that operation as an ORTE stage gate that held the process until a startup message containing all required modex (and OOB contact info - see #3 below) info could be sent to it. Each process would send its data to the HNP's registry, which assembled and sent the message when all processes had reported in.
In addition, ORTE had taken responsibility for monitoring process status as it progressed through a series of "stage gates". The process reported its status at each gate, and ORTE would then send a "release" message once all procs had reported in.
The incoming changes revamp these procedures in three ways:
1. eliminating the ORTE stage gate system and cleanly delineating responsibility between the OMPI and ORTE layers for MPI init/finalize. The modex stage gate (STG1) has been replaced by a collective operation in the modex itself that performs an allgather on the required modex info. The allgather is implemented using the orte_grpcomm framework since the BTL's are not active at that point. At the moment, the grpcomm framework only has a "basic" component analogous to OMPI's "basic" coll framework - I would recommend that the MPI team create additional, more advanced components to improve performance of this step.
The other stage gates have been replaced by orte_grpcomm barrier functions. We tried to use MPI barriers instead (since the BTL's are active at that point), but - as we discussed on the telecon - these are not currently true barriers so the job would hang when we fell through while messages were still in process. Note that the grpcomm barrier doesn't actually resolve that problem, but Brian has pointed out that we are unlikely to ever see it violated. Again, you might want to spend a little time on an advanced barrier algorithm as the one in "basic" is very simplistic.
Summarizing this change: ORTE no longer tracks process state nor has direct responsibility for synchronizing jobs. This is now done via collective operations within the MPI layer, albeit using ORTE collective communication services. I -strongly- urge the MPI team to implement advanced collective algorithms to improve the performance of this critical procedure.
2. reducing the volume of data exchanged during modex. Data in the modex consisted of the process name, the name of the node where that process is located (expressed as a string), plus a string representation of all contact info. The nodename was required in order for the modex to determine if the process was local or not - in addition, some people like to have it to print pretty error messages when a connection failed.
The size of this data has been reduced in three ways:
(a) reducing the size of the process name itself. The process name consisted of two 32-bit fields for the jobid and vpid. This is far larger than any current system, or system likely to exist in the near future, can support. Accordingly, the default size of these fields has been reduced to 16-bits, which means you can have 32k procs in each of 32k jobs. Since the daemons must have a vpid, and we require one daemon/node, this also restricts the default configuration to 32k nodes.
To support any future "mega-clusters", a configuration option --enable-jumbo-apps has been added. This option increases the jobid and vpid field sizes to 32-bits. Someday, if necessary, someone can add yet another option to increase them to 64-bits, I suppose.
(b) replacing the string nodename with an integer nodeid. Since we have one daemon/node, the nodeid corresponds to the local daemon's vpid. This replaces an often lengthy string with only 2 (or at most 4) bytes, a substantial reduction.
(c) when the mca param requesting that nodenames be sent to support pretty error messages, a second mca param is now used to request FQDN - otherwise, the domain name is stripped (by default) from the message to save space. If someone wants to combine those into a single param somehow (perhaps with an argument?), they are welcome to do so - I didn't want to alter what people are already using.
While these may seem like small savings, they actually amount to a significant impact when aggregated across the entire modex operation. Since every proc must receive the modex data regardless of the collective used to send it, just reducing the size of the process name removes nearly 400MBytes of communication from a 32k proc job (admittedly, much of this comm may occur in parallel). So it does add up pretty quickly.
3. routing RML messages to reduce connections. The default messaging system remains point-to-point - i.e., each proc opens a socket to every proc it communicates with and sends its messages directly. A new option uses the orteds as routers - i.e., each proc only opens a single socket to its local orted. All messages are sent from the proc to the orted, which forwards the message to the orted on the node where the intended recipient proc is located - that orted then forwards the message to its local proc (the recipient). This greatly reduces the connection storm we have encountered during startup.
It also has the benefit of removing the sharing of every proc's OOB contact with every other proc. The orted routing tables are populated during launch since every orted gets a map of where every proc is being placed. Each proc, therefore, only needs to know the contact info for its local daemon, which is passed in via the environment when the proc is fork/exec'd by the daemon. This alone removes ~50 bytes/process of communication that was in the current STG1 startup message - so for our 32k proc job, this saves us roughly 32k*50 = 1.6MBytes sent to 32k procs = 51GBytes of messaging.
Note that you can use the new routing method by specifying -mca routed tree - if you so desire. This mode will become the default at some point in the future.
There are a few minor additional changes in the commit that I'll just note in passing:
* propagation of command line mca params to the orteds - fixes ticket #1073. See note there for details.
* requiring of "finalize" prior to "exit" for MPI procs - fixes ticket #1144. See note there for details.
* cleanup of some stale header files
This commit was SVN r16364.
2007-10-05 23:48:23 +04:00
|
|
|
if( OMPI_SUCCESS != (ret = mca_pml_ob1_add_procs(procs, num_procs) ) ) {
|
2008-06-09 18:53:58 +04:00
|
|
|
opal_output(0, "pml:ob1: ft_event(Restart): Failed in add_procs (%d)", ret);
|
2007-04-19 07:05:12 +04:00
|
|
|
return ret;
|
|
|
|
}
|
|
|
|
|
These changes were mostly captured in a prior RFC (except for #2 below) and are aimed specifically at improving startup performance and setting up the remaining modifications described in that RFC.
The commit has been tested for C/R and Cray operations, and on Odin (SLURM, rsh) and RoadRunner (TM). I tried to update all environments, but obviously could not test them. I know that Windows needs some work, and have highlighted what is know to be needed in the odls process component.
This represents a lot of work by Brian, Tim P, Josh, and myself, with much advice from Jeff and others. For posterity, I have appended a copy of the email describing the work that was done:
As we have repeatedly noted, the modex operation in MPI_Init is the single greatest consumer of time during startup. To-date, we have executed that operation as an ORTE stage gate that held the process until a startup message containing all required modex (and OOB contact info - see #3 below) info could be sent to it. Each process would send its data to the HNP's registry, which assembled and sent the message when all processes had reported in.
In addition, ORTE had taken responsibility for monitoring process status as it progressed through a series of "stage gates". The process reported its status at each gate, and ORTE would then send a "release" message once all procs had reported in.
The incoming changes revamp these procedures in three ways:
1. eliminating the ORTE stage gate system and cleanly delineating responsibility between the OMPI and ORTE layers for MPI init/finalize. The modex stage gate (STG1) has been replaced by a collective operation in the modex itself that performs an allgather on the required modex info. The allgather is implemented using the orte_grpcomm framework since the BTL's are not active at that point. At the moment, the grpcomm framework only has a "basic" component analogous to OMPI's "basic" coll framework - I would recommend that the MPI team create additional, more advanced components to improve performance of this step.
The other stage gates have been replaced by orte_grpcomm barrier functions. We tried to use MPI barriers instead (since the BTL's are active at that point), but - as we discussed on the telecon - these are not currently true barriers so the job would hang when we fell through while messages were still in process. Note that the grpcomm barrier doesn't actually resolve that problem, but Brian has pointed out that we are unlikely to ever see it violated. Again, you might want to spend a little time on an advanced barrier algorithm as the one in "basic" is very simplistic.
Summarizing this change: ORTE no longer tracks process state nor has direct responsibility for synchronizing jobs. This is now done via collective operations within the MPI layer, albeit using ORTE collective communication services. I -strongly- urge the MPI team to implement advanced collective algorithms to improve the performance of this critical procedure.
2. reducing the volume of data exchanged during modex. Data in the modex consisted of the process name, the name of the node where that process is located (expressed as a string), plus a string representation of all contact info. The nodename was required in order for the modex to determine if the process was local or not - in addition, some people like to have it to print pretty error messages when a connection failed.
The size of this data has been reduced in three ways:
(a) reducing the size of the process name itself. The process name consisted of two 32-bit fields for the jobid and vpid. This is far larger than any current system, or system likely to exist in the near future, can support. Accordingly, the default size of these fields has been reduced to 16-bits, which means you can have 32k procs in each of 32k jobs. Since the daemons must have a vpid, and we require one daemon/node, this also restricts the default configuration to 32k nodes.
To support any future "mega-clusters", a configuration option --enable-jumbo-apps has been added. This option increases the jobid and vpid field sizes to 32-bits. Someday, if necessary, someone can add yet another option to increase them to 64-bits, I suppose.
(b) replacing the string nodename with an integer nodeid. Since we have one daemon/node, the nodeid corresponds to the local daemon's vpid. This replaces an often lengthy string with only 2 (or at most 4) bytes, a substantial reduction.
(c) when the mca param requesting that nodenames be sent to support pretty error messages, a second mca param is now used to request FQDN - otherwise, the domain name is stripped (by default) from the message to save space. If someone wants to combine those into a single param somehow (perhaps with an argument?), they are welcome to do so - I didn't want to alter what people are already using.
While these may seem like small savings, they actually amount to a significant impact when aggregated across the entire modex operation. Since every proc must receive the modex data regardless of the collective used to send it, just reducing the size of the process name removes nearly 400MBytes of communication from a 32k proc job (admittedly, much of this comm may occur in parallel). So it does add up pretty quickly.
3. routing RML messages to reduce connections. The default messaging system remains point-to-point - i.e., each proc opens a socket to every proc it communicates with and sends its messages directly. A new option uses the orteds as routers - i.e., each proc only opens a single socket to its local orted. All messages are sent from the proc to the orted, which forwards the message to the orted on the node where the intended recipient proc is located - that orted then forwards the message to its local proc (the recipient). This greatly reduces the connection storm we have encountered during startup.
It also has the benefit of removing the sharing of every proc's OOB contact with every other proc. The orted routing tables are populated during launch since every orted gets a map of where every proc is being placed. Each proc, therefore, only needs to know the contact info for its local daemon, which is passed in via the environment when the proc is fork/exec'd by the daemon. This alone removes ~50 bytes/process of communication that was in the current STG1 startup message - so for our 32k proc job, this saves us roughly 32k*50 = 1.6MBytes sent to 32k procs = 51GBytes of messaging.
Note that you can use the new routing method by specifying -mca routed tree - if you so desire. This mode will become the default at some point in the future.
There are a few minor additional changes in the commit that I'll just note in passing:
* propagation of command line mca params to the orteds - fixes ticket #1073. See note there for details.
* requiring of "finalize" prior to "exit" for MPI procs - fixes ticket #1144. See note there for details.
* cleanup of some stale header files
This commit was SVN r16364.
2007-10-05 23:48:23 +04:00
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/* Is this barrier necessary ? JJH */
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if (OMPI_SUCCESS != (ret = orte_grpcomm.barrier())) {
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2008-06-09 18:53:58 +04:00
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opal_output(0, "pml:ob1: ft_event(Restart): Failed in orte_grpcomm.barrier (%d)", ret);
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2007-04-19 07:05:12 +04:00
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return ret;
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}
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if( NULL != procs ) {
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for(p = 0; p < (int)num_procs; ++p) {
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OBJ_RELEASE(procs[p]);
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}
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free(procs);
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procs = NULL;
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}
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2007-04-05 17:52:05 +04:00
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}
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else if(OPAL_CRS_TERM == state ) {
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;
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}
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else {
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;
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}
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return OMPI_SUCCESS;
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}
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2010-03-13 02:57:50 +03:00
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#endif /* OPAL_ENABLE_FT_CR */
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2007-07-01 15:34:23 +04:00
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int mca_pml_ob1_com_btl_comp(const void *v1, const void *v2)
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{
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2007-09-12 19:29:58 +04:00
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const mca_pml_ob1_com_btl_t *b1 = (const mca_pml_ob1_com_btl_t *) v1;
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const mca_pml_ob1_com_btl_t *b2 = (const mca_pml_ob1_com_btl_t *) v2;
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2007-07-01 15:34:23 +04:00
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if(b1->bml_btl->btl_weight < b2->bml_btl->btl_weight)
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return 1;
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if(b1->bml_btl->btl_weight > b2->bml_btl->btl_weight)
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return -1;
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return 0;
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}
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2008-10-23 00:13:33 +04:00
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