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openmpi/ompi/mca/coll/basic/coll_basic_alltoall.c

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C
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/* -*- Mode: C; c-basic-offset:4 ; indent-tabs-mode:nil -*- */
/*
* Copyright (c) 2004-2005 The Trustees of Indiana University and Indiana
* University Research and Technology
* Corporation. All rights reserved.
* Copyright (c) 2004-2005 The University of Tennessee and The University
* of Tennessee Research Foundation. All rights
* reserved.
* Copyright (c) 2004-2005 High Performance Computing Center Stuttgart,
* University of Stuttgart. All rights reserved.
* Copyright (c) 2004-2005 The Regents of the University of California.
* All rights reserved.
* Copyright (c) 2013 Los Alamos National Security, LLC. All rights
* reserved.
* $COPYRIGHT$
*
* Additional copyrights may follow
*
* $HEADER$
*/
#include "ompi_config.h"
#include "coll_basic.h"
#include "mpi.h"
#include "ompi/constants.h"
- Split the datatype engine into two parts: an MPI specific part in OMPI and a language agnostic part in OPAL. The convertor is completely moved into OPAL. This offers several benefits as described in RFC http://www.open-mpi.org/community/lists/devel/2009/07/6387.php namely: - Fewer basic types (int* and float* types, boolean and wchar - Fixing naming scheme to ompi-nomenclature. - Usability outside of the ompi-layer. - Due to the fixed nature of simple opal types, their information is completely known at compile time and therefore constified - With fewer datatypes (22), the actual sizes of bit-field types may be reduced from 64 to 32 bits, allowing reorganizing the opal_datatype structure, eliminating holes and keeping data required in convertor (upon send/recv) in one cacheline... This has implications to the convertor-datastructure and other parts of the code. - Several performance tests have been run, the netpipe latency does not change with this patch on Linux/x86-64 on the smoky cluster. - Extensive tests have been done to verify correctness (no new regressions) using: 1. mpi_test_suite on linux/x86-64 using clean ompi-trunk and ompi-ddt: a. running both trunk and ompi-ddt resulted in no differences (except for MPI_SHORT_INT and MPI_TYPE_MIX_LB_UB do now run correctly). b. with --enable-memchecker and running under valgrind (one buglet when run with static found in test-suite, commited) 2. ibm testsuite on linux/x86-64 using clean ompi-trunk and ompi-ddt: all passed (except for the dynamic/ tests failed!! as trunk/MTT) 3. compilation and usage of HDF5 tests on Jaguar using PGI and PathScale compilers. 4. compilation and usage on Scicortex. - Please note, that for the heterogeneous case, (-m32 compiled binaries/ompi), neither ompi-trunk, nor ompi-ddt branch would successfully launch. This commit was SVN r21641.
2009-07-13 08:56:31 +04:00
#include "ompi/datatype/ompi_datatype.h"
#include "ompi/mca/coll/coll.h"
#include "ompi/mca/coll/base/coll_tags.h"
#include "ompi/mca/pml/pml.h"
static int
mca_coll_basic_alltoall_intra_inplace(void *rbuf, int rcount,
struct ompi_datatype_t *rdtype,
struct ompi_communicator_t *comm,
mca_coll_base_module_t *module)
{
mca_coll_basic_module_t *basic_module = (mca_coll_basic_module_t*) module;
int i, j, size, rank, err;
MPI_Request *preq;
char *tmp_buffer;
size_t max_size;
ptrdiff_t ext;
/* Initialize. */
size = ompi_comm_size(comm);
rank = ompi_comm_rank(comm);
/* If only one process, we're done. */
if (1 == size) {
return MPI_SUCCESS;
}
/* Find the largest receive amount */
ompi_datatype_type_extent (rdtype, &ext);
max_size = ext * rcount;
/* Allocate a temporary buffer */
tmp_buffer = calloc (max_size, 1);
if (NULL == tmp_buffer) {
return OMPI_ERR_OUT_OF_RESOURCE;
}
/* in-place alltoall slow algorithm (but works) */
for (i = 0 ; i < size ; ++i) {
for (j = i+1 ; j < size ; ++j) {
/* Initiate all send/recv to/from others. */
preq = basic_module->mccb_reqs;
if (i == rank) {
/* Copy the data into the temporary buffer */
err = ompi_datatype_copy_content_same_ddt (rdtype, rcount, tmp_buffer,
(char *) rbuf + j * max_size);
if (MPI_SUCCESS != err) { goto error_hndl; }
/* Exchange data with the peer */
err = MCA_PML_CALL(irecv ((char *) rbuf + max_size * j, rcount, rdtype,
j, MCA_COLL_BASE_TAG_ALLTOALL, comm, preq++));
if (MPI_SUCCESS != err) { goto error_hndl; }
err = MCA_PML_CALL(isend ((char *) tmp_buffer, rcount, rdtype,
j, MCA_COLL_BASE_TAG_ALLTOALL, MCA_PML_BASE_SEND_STANDARD,
comm, preq++));
if (MPI_SUCCESS != err) { goto error_hndl; }
} else if (j == rank) {
/* Copy the data into the temporary buffer */
err = ompi_datatype_copy_content_same_ddt (rdtype, rcount, tmp_buffer,
(char *) rbuf + i * max_size);
if (MPI_SUCCESS != err) { goto error_hndl; }
/* Exchange data with the peer */
err = MCA_PML_CALL(irecv ((char *) rbuf + max_size * i, rcount, rdtype,
i, MCA_COLL_BASE_TAG_ALLTOALL, comm, preq++));
if (MPI_SUCCESS != err) { goto error_hndl; }
err = MCA_PML_CALL(isend ((char *) tmp_buffer, rcount, rdtype,
i, MCA_COLL_BASE_TAG_ALLTOALL, MCA_PML_BASE_SEND_STANDARD,
comm, preq++));
if (MPI_SUCCESS != err) { goto error_hndl; }
} else {
continue;
}
/* Wait for the requests to complete */
err = ompi_request_wait_all (2, basic_module->mccb_reqs, MPI_STATUS_IGNORE);
if (MPI_SUCCESS != err) { goto error_hndl; }
/* Free the requests. */
mca_coll_basic_free_reqs(basic_module->mccb_reqs, 2);
}
}
error_hndl:
/* Free the temporary buffer */
free (tmp_buffer);
/* All done */
return err;
}
/*
* alltoall_intra
*
* Function: - MPI_Alltoall
* Accepts: - same as MPI_Alltoall()
* Returns: - MPI_SUCCESS or an MPI error code
*/
int
mca_coll_basic_alltoall_intra(void *sbuf, int scount,
struct ompi_datatype_t *sdtype,
void *rbuf, int rcount,
struct ompi_datatype_t *rdtype,
struct ompi_communicator_t *comm,
mca_coll_base_module_t *module)
{
int i;
int rank;
int size;
int err;
int nreqs;
char *psnd;
char *prcv;
MPI_Aint lb;
MPI_Aint sndinc;
MPI_Aint rcvinc;
ompi_request_t **req;
ompi_request_t **sreq;
ompi_request_t **rreq;
mca_coll_basic_module_t *basic_module = (mca_coll_basic_module_t*) module;
/* Initialize. */
if (MPI_IN_PLACE == sbuf) {
return mca_coll_basic_alltoall_intra_inplace (rbuf, rcount, rdtype,
comm, module);
}
size = ompi_comm_size(comm);
rank = ompi_comm_rank(comm);
- Split the datatype engine into two parts: an MPI specific part in OMPI and a language agnostic part in OPAL. The convertor is completely moved into OPAL. This offers several benefits as described in RFC http://www.open-mpi.org/community/lists/devel/2009/07/6387.php namely: - Fewer basic types (int* and float* types, boolean and wchar - Fixing naming scheme to ompi-nomenclature. - Usability outside of the ompi-layer. - Due to the fixed nature of simple opal types, their information is completely known at compile time and therefore constified - With fewer datatypes (22), the actual sizes of bit-field types may be reduced from 64 to 32 bits, allowing reorganizing the opal_datatype structure, eliminating holes and keeping data required in convertor (upon send/recv) in one cacheline... This has implications to the convertor-datastructure and other parts of the code. - Several performance tests have been run, the netpipe latency does not change with this patch on Linux/x86-64 on the smoky cluster. - Extensive tests have been done to verify correctness (no new regressions) using: 1. mpi_test_suite on linux/x86-64 using clean ompi-trunk and ompi-ddt: a. running both trunk and ompi-ddt resulted in no differences (except for MPI_SHORT_INT and MPI_TYPE_MIX_LB_UB do now run correctly). b. with --enable-memchecker and running under valgrind (one buglet when run with static found in test-suite, commited) 2. ibm testsuite on linux/x86-64 using clean ompi-trunk and ompi-ddt: all passed (except for the dynamic/ tests failed!! as trunk/MTT) 3. compilation and usage of HDF5 tests on Jaguar using PGI and PathScale compilers. 4. compilation and usage on Scicortex. - Please note, that for the heterogeneous case, (-m32 compiled binaries/ompi), neither ompi-trunk, nor ompi-ddt branch would successfully launch. This commit was SVN r21641.
2009-07-13 08:56:31 +04:00
err = ompi_datatype_get_extent(sdtype, &lb, &sndinc);
if (OMPI_SUCCESS != err) {
return err;
}
sndinc *= scount;
- Split the datatype engine into two parts: an MPI specific part in OMPI and a language agnostic part in OPAL. The convertor is completely moved into OPAL. This offers several benefits as described in RFC http://www.open-mpi.org/community/lists/devel/2009/07/6387.php namely: - Fewer basic types (int* and float* types, boolean and wchar - Fixing naming scheme to ompi-nomenclature. - Usability outside of the ompi-layer. - Due to the fixed nature of simple opal types, their information is completely known at compile time and therefore constified - With fewer datatypes (22), the actual sizes of bit-field types may be reduced from 64 to 32 bits, allowing reorganizing the opal_datatype structure, eliminating holes and keeping data required in convertor (upon send/recv) in one cacheline... This has implications to the convertor-datastructure and other parts of the code. - Several performance tests have been run, the netpipe latency does not change with this patch on Linux/x86-64 on the smoky cluster. - Extensive tests have been done to verify correctness (no new regressions) using: 1. mpi_test_suite on linux/x86-64 using clean ompi-trunk and ompi-ddt: a. running both trunk and ompi-ddt resulted in no differences (except for MPI_SHORT_INT and MPI_TYPE_MIX_LB_UB do now run correctly). b. with --enable-memchecker and running under valgrind (one buglet when run with static found in test-suite, commited) 2. ibm testsuite on linux/x86-64 using clean ompi-trunk and ompi-ddt: all passed (except for the dynamic/ tests failed!! as trunk/MTT) 3. compilation and usage of HDF5 tests on Jaguar using PGI and PathScale compilers. 4. compilation and usage on Scicortex. - Please note, that for the heterogeneous case, (-m32 compiled binaries/ompi), neither ompi-trunk, nor ompi-ddt branch would successfully launch. This commit was SVN r21641.
2009-07-13 08:56:31 +04:00
err = ompi_datatype_get_extent(rdtype, &lb, &rcvinc);
if (OMPI_SUCCESS != err) {
return err;
}
rcvinc *= rcount;
/* simple optimization */
psnd = ((char *) sbuf) + (rank * sndinc);
prcv = ((char *) rbuf) + (rank * rcvinc);
- Split the datatype engine into two parts: an MPI specific part in OMPI and a language agnostic part in OPAL. The convertor is completely moved into OPAL. This offers several benefits as described in RFC http://www.open-mpi.org/community/lists/devel/2009/07/6387.php namely: - Fewer basic types (int* and float* types, boolean and wchar - Fixing naming scheme to ompi-nomenclature. - Usability outside of the ompi-layer. - Due to the fixed nature of simple opal types, their information is completely known at compile time and therefore constified - With fewer datatypes (22), the actual sizes of bit-field types may be reduced from 64 to 32 bits, allowing reorganizing the opal_datatype structure, eliminating holes and keeping data required in convertor (upon send/recv) in one cacheline... This has implications to the convertor-datastructure and other parts of the code. - Several performance tests have been run, the netpipe latency does not change with this patch on Linux/x86-64 on the smoky cluster. - Extensive tests have been done to verify correctness (no new regressions) using: 1. mpi_test_suite on linux/x86-64 using clean ompi-trunk and ompi-ddt: a. running both trunk and ompi-ddt resulted in no differences (except for MPI_SHORT_INT and MPI_TYPE_MIX_LB_UB do now run correctly). b. with --enable-memchecker and running under valgrind (one buglet when run with static found in test-suite, commited) 2. ibm testsuite on linux/x86-64 using clean ompi-trunk and ompi-ddt: all passed (except for the dynamic/ tests failed!! as trunk/MTT) 3. compilation and usage of HDF5 tests on Jaguar using PGI and PathScale compilers. 4. compilation and usage on Scicortex. - Please note, that for the heterogeneous case, (-m32 compiled binaries/ompi), neither ompi-trunk, nor ompi-ddt branch would successfully launch. This commit was SVN r21641.
2009-07-13 08:56:31 +04:00
err = ompi_datatype_sndrcv(psnd, scount, sdtype, prcv, rcount, rdtype);
if (MPI_SUCCESS != err) {
return err;
}
/* If only one process, we're done. */
if (1 == size) {
return MPI_SUCCESS;
}
/* Initiate all send/recv to/from others. */
req = rreq = basic_module->mccb_reqs;
sreq = rreq + size - 1;
prcv = (char *) rbuf;
psnd = (char *) sbuf;
/* Post all receives first -- a simple optimization */
for (nreqs = 0, i = (rank + 1) % size; i != rank; i = (i + 1) % size, ++rreq, ++nreqs) {
err =
MCA_PML_CALL(irecv_init
(prcv + (i * rcvinc), rcount, rdtype, i,
MCA_COLL_BASE_TAG_ALLTOALL, comm, rreq));
if (MPI_SUCCESS != err) {
mca_coll_basic_free_reqs(req, nreqs);
return err;
}
}
/* Now post all sends */
for (nreqs = 0, i = (rank + 1) % size; i != rank; i = (i + 1) % size, ++sreq, ++nreqs) {
err =
MCA_PML_CALL(isend_init
(psnd + (i * sndinc), scount, sdtype, i,
MCA_COLL_BASE_TAG_ALLTOALL,
MCA_PML_BASE_SEND_STANDARD, comm, sreq));
if (MPI_SUCCESS != err) {
mca_coll_basic_free_reqs(req, nreqs);
return err;
}
}
nreqs = (size - 1) * 2;
/* Start your engines. This will never return an error. */
MCA_PML_CALL(start(nreqs, req));
/* Wait for them all. If there's an error, note that we don't
* care what the error was -- just that there *was* an error. The
* PML will finish all requests, even if one or more of them fail.
* i.e., by the end of this call, all the requests are free-able.
* So free them anyway -- even if there was an error, and return
* the error after we free everything. */
err = ompi_request_wait_all(nreqs, req, MPI_STATUSES_IGNORE);
/* Free the reqs */
mca_coll_basic_free_reqs(req, nreqs);
/* All done */
return err;
}
/*
* alltoall_inter
*
* Function: - MPI_Alltoall
* Accepts: - same as MPI_Alltoall()
* Returns: - MPI_SUCCESS or an MPI error code
*/
int
mca_coll_basic_alltoall_inter(void *sbuf, int scount,
struct ompi_datatype_t *sdtype,
void *rbuf, int rcount,
struct ompi_datatype_t *rdtype,
struct ompi_communicator_t *comm,
mca_coll_base_module_t *module)
{
int i;
int size;
int err;
int nreqs;
char *psnd;
char *prcv;
MPI_Aint lb;
MPI_Aint sndinc;
MPI_Aint rcvinc;
ompi_request_t **req;
ompi_request_t **sreq;
ompi_request_t **rreq;
mca_coll_basic_module_t *basic_module = (mca_coll_basic_module_t*) module;
/* Initialize. */
size = ompi_comm_remote_size(comm);
- Split the datatype engine into two parts: an MPI specific part in OMPI and a language agnostic part in OPAL. The convertor is completely moved into OPAL. This offers several benefits as described in RFC http://www.open-mpi.org/community/lists/devel/2009/07/6387.php namely: - Fewer basic types (int* and float* types, boolean and wchar - Fixing naming scheme to ompi-nomenclature. - Usability outside of the ompi-layer. - Due to the fixed nature of simple opal types, their information is completely known at compile time and therefore constified - With fewer datatypes (22), the actual sizes of bit-field types may be reduced from 64 to 32 bits, allowing reorganizing the opal_datatype structure, eliminating holes and keeping data required in convertor (upon send/recv) in one cacheline... This has implications to the convertor-datastructure and other parts of the code. - Several performance tests have been run, the netpipe latency does not change with this patch on Linux/x86-64 on the smoky cluster. - Extensive tests have been done to verify correctness (no new regressions) using: 1. mpi_test_suite on linux/x86-64 using clean ompi-trunk and ompi-ddt: a. running both trunk and ompi-ddt resulted in no differences (except for MPI_SHORT_INT and MPI_TYPE_MIX_LB_UB do now run correctly). b. with --enable-memchecker and running under valgrind (one buglet when run with static found in test-suite, commited) 2. ibm testsuite on linux/x86-64 using clean ompi-trunk and ompi-ddt: all passed (except for the dynamic/ tests failed!! as trunk/MTT) 3. compilation and usage of HDF5 tests on Jaguar using PGI and PathScale compilers. 4. compilation and usage on Scicortex. - Please note, that for the heterogeneous case, (-m32 compiled binaries/ompi), neither ompi-trunk, nor ompi-ddt branch would successfully launch. This commit was SVN r21641.
2009-07-13 08:56:31 +04:00
err = ompi_datatype_get_extent(sdtype, &lb, &sndinc);
if (OMPI_SUCCESS != err) {
return err;
}
sndinc *= scount;
- Split the datatype engine into two parts: an MPI specific part in OMPI and a language agnostic part in OPAL. The convertor is completely moved into OPAL. This offers several benefits as described in RFC http://www.open-mpi.org/community/lists/devel/2009/07/6387.php namely: - Fewer basic types (int* and float* types, boolean and wchar - Fixing naming scheme to ompi-nomenclature. - Usability outside of the ompi-layer. - Due to the fixed nature of simple opal types, their information is completely known at compile time and therefore constified - With fewer datatypes (22), the actual sizes of bit-field types may be reduced from 64 to 32 bits, allowing reorganizing the opal_datatype structure, eliminating holes and keeping data required in convertor (upon send/recv) in one cacheline... This has implications to the convertor-datastructure and other parts of the code. - Several performance tests have been run, the netpipe latency does not change with this patch on Linux/x86-64 on the smoky cluster. - Extensive tests have been done to verify correctness (no new regressions) using: 1. mpi_test_suite on linux/x86-64 using clean ompi-trunk and ompi-ddt: a. running both trunk and ompi-ddt resulted in no differences (except for MPI_SHORT_INT and MPI_TYPE_MIX_LB_UB do now run correctly). b. with --enable-memchecker and running under valgrind (one buglet when run with static found in test-suite, commited) 2. ibm testsuite on linux/x86-64 using clean ompi-trunk and ompi-ddt: all passed (except for the dynamic/ tests failed!! as trunk/MTT) 3. compilation and usage of HDF5 tests on Jaguar using PGI and PathScale compilers. 4. compilation and usage on Scicortex. - Please note, that for the heterogeneous case, (-m32 compiled binaries/ompi), neither ompi-trunk, nor ompi-ddt branch would successfully launch. This commit was SVN r21641.
2009-07-13 08:56:31 +04:00
err = ompi_datatype_get_extent(rdtype, &lb, &rcvinc);
if (OMPI_SUCCESS != err) {
return err;
}
rcvinc *= rcount;
/* Initiate all send/recv to/from others. */
nreqs = size * 2;
req = rreq = basic_module->mccb_reqs;
sreq = rreq + size;
prcv = (char *) rbuf;
psnd = (char *) sbuf;
/* Post all receives first */
for (i = 0; i < size; i++, ++rreq) {
err = MCA_PML_CALL(irecv(prcv + (i * rcvinc), rcount, rdtype, i,
MCA_COLL_BASE_TAG_ALLTOALL, comm, rreq));
if (OMPI_SUCCESS != err) {
return err;
}
}
/* Now post all sends */
for (i = 0; i < size; i++, ++sreq) {
err = MCA_PML_CALL(isend(psnd + (i * sndinc), scount, sdtype, i,
MCA_COLL_BASE_TAG_ALLTOALL,
MCA_PML_BASE_SEND_STANDARD, comm, sreq));
if (OMPI_SUCCESS != err) {
return err;
}
}
/* Wait for them all. If there's an error, note that we don't
* care what the error was -- just that there *was* an error. The
* PML will finish all requests, even if one or more of them fail.
* i.e., by the end of this call, all the requests are free-able.
* So free them anyway -- even if there was an error, and return
* the error after we free everything. */
err = ompi_request_wait_all(nreqs, req, MPI_STATUSES_IGNORE);
/* All done */
return err;
}