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openmpi/ompi/mca/coll/tuned/coll_tuned_decision_fixed.c

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/*
* Copyright (c) 2004-2005 The Trustees of Indiana University and Indiana
* University Research and Technology
* Corporation. All rights reserved.
* Copyright (c) 2004-2012 The University of Tennessee and The University
* of Tennessee Research Foundation. All rights
* reserved.
* Copyright (c) 2004-2005 High Performance Computing Center Stuttgart,
* University of Stuttgart. All rights reserved.
* Copyright (c) 2004-2005 The Regents of the University of California.
* All rights reserved.
* Copyright (c) 2008 Sun Microsystems, Inc. All rights reserved.
* $COPYRIGHT$
*
* Additional copyrights may follow
*
* $HEADER$
*/
#include "ompi_config.h"
#include "mpi.h"
#include "opal/util/bit_ops.h"
- Split the datatype engine into two parts: an MPI specific part in OMPI and a language agnostic part in OPAL. The convertor is completely moved into OPAL. This offers several benefits as described in RFC http://www.open-mpi.org/community/lists/devel/2009/07/6387.php namely: - Fewer basic types (int* and float* types, boolean and wchar - Fixing naming scheme to ompi-nomenclature. - Usability outside of the ompi-layer. - Due to the fixed nature of simple opal types, their information is completely known at compile time and therefore constified - With fewer datatypes (22), the actual sizes of bit-field types may be reduced from 64 to 32 bits, allowing reorganizing the opal_datatype structure, eliminating holes and keeping data required in convertor (upon send/recv) in one cacheline... This has implications to the convertor-datastructure and other parts of the code. - Several performance tests have been run, the netpipe latency does not change with this patch on Linux/x86-64 on the smoky cluster. - Extensive tests have been done to verify correctness (no new regressions) using: 1. mpi_test_suite on linux/x86-64 using clean ompi-trunk and ompi-ddt: a. running both trunk and ompi-ddt resulted in no differences (except for MPI_SHORT_INT and MPI_TYPE_MIX_LB_UB do now run correctly). b. with --enable-memchecker and running under valgrind (one buglet when run with static found in test-suite, commited) 2. ibm testsuite on linux/x86-64 using clean ompi-trunk and ompi-ddt: all passed (except for the dynamic/ tests failed!! as trunk/MTT) 3. compilation and usage of HDF5 tests on Jaguar using PGI and PathScale compilers. 4. compilation and usage on Scicortex. - Please note, that for the heterogeneous case, (-m32 compiled binaries/ompi), neither ompi-trunk, nor ompi-ddt branch would successfully launch. This commit was SVN r21641.
2009-07-13 08:56:31 +04:00
#include "ompi/datatype/ompi_datatype.h"
#include "ompi/communicator/communicator.h"
#include "ompi/mca/coll/coll.h"
#include "ompi/mca/coll/base/coll_tags.h"
#include "ompi/op/op.h"
#include "coll_tuned.h"
/*
* allreduce_intra
*
* Function: - allreduce using other MPI collectives
* Accepts: - same as MPI_Allreduce()
* Returns: - MPI_SUCCESS or error code
*/
int
ompi_coll_tuned_allreduce_intra_dec_fixed (void *sbuf, void *rbuf, int count,
struct ompi_datatype_t *dtype,
struct ompi_op_t *op,
struct ompi_communicator_t *comm,
mca_coll_base_module_t *module)
{
size_t dsize, block_dsize;
int comm_size = ompi_comm_size(comm);
const size_t intermediate_message = 10000;
OPAL_OUTPUT((ompi_coll_tuned_stream, "ompi_coll_tuned_allreduce_intra_dec_fixed"));
/**
* Decision function based on MX results from the Grig cluster at UTK.
*
* Currently, linear, recursive doubling, and nonoverlapping algorithms
* can handle both commutative and non-commutative operations.
* Ring algorithm does not support non-commutative operations.
*/
- Split the datatype engine into two parts: an MPI specific part in OMPI and a language agnostic part in OPAL. The convertor is completely moved into OPAL. This offers several benefits as described in RFC http://www.open-mpi.org/community/lists/devel/2009/07/6387.php namely: - Fewer basic types (int* and float* types, boolean and wchar - Fixing naming scheme to ompi-nomenclature. - Usability outside of the ompi-layer. - Due to the fixed nature of simple opal types, their information is completely known at compile time and therefore constified - With fewer datatypes (22), the actual sizes of bit-field types may be reduced from 64 to 32 bits, allowing reorganizing the opal_datatype structure, eliminating holes and keeping data required in convertor (upon send/recv) in one cacheline... This has implications to the convertor-datastructure and other parts of the code. - Several performance tests have been run, the netpipe latency does not change with this patch on Linux/x86-64 on the smoky cluster. - Extensive tests have been done to verify correctness (no new regressions) using: 1. mpi_test_suite on linux/x86-64 using clean ompi-trunk and ompi-ddt: a. running both trunk and ompi-ddt resulted in no differences (except for MPI_SHORT_INT and MPI_TYPE_MIX_LB_UB do now run correctly). b. with --enable-memchecker and running under valgrind (one buglet when run with static found in test-suite, commited) 2. ibm testsuite on linux/x86-64 using clean ompi-trunk and ompi-ddt: all passed (except for the dynamic/ tests failed!! as trunk/MTT) 3. compilation and usage of HDF5 tests on Jaguar using PGI and PathScale compilers. 4. compilation and usage on Scicortex. - Please note, that for the heterogeneous case, (-m32 compiled binaries/ompi), neither ompi-trunk, nor ompi-ddt branch would successfully launch. This commit was SVN r21641.
2009-07-13 08:56:31 +04:00
ompi_datatype_type_size(dtype, &dsize);
block_dsize = dsize * (ptrdiff_t)count;
if (block_dsize < intermediate_message) {
return (ompi_coll_tuned_allreduce_intra_recursivedoubling (sbuf, rbuf,
count, dtype,
op, comm, module));
}
if( ompi_op_is_commute(op) && (count > comm_size) ) {
const size_t segment_size = 1 << 20; /* 1 MB */
if (((size_t)comm_size * (size_t)segment_size >= block_dsize)) {
return (ompi_coll_tuned_allreduce_intra_ring (sbuf, rbuf, count, dtype,
op, comm, module));
} else {
return (ompi_coll_tuned_allreduce_intra_ring_segmented (sbuf, rbuf,
count, dtype,
op, comm, module,
segment_size));
}
}
return (ompi_coll_tuned_allreduce_intra_nonoverlapping (sbuf, rbuf, count,
dtype, op, comm, module));
}
/*
* alltoall_intra_dec
*
* Function: - seletects alltoall algorithm to use
* Accepts: - same arguments as MPI_Alltoall()
* Returns: - MPI_SUCCESS or error code (passed from the bcast implementation)
*/
int ompi_coll_tuned_alltoall_intra_dec_fixed(void *sbuf, int scount,
struct ompi_datatype_t *sdtype,
void* rbuf, int rcount,
struct ompi_datatype_t *rdtype,
struct ompi_communicator_t *comm,
mca_coll_base_module_t *module)
{
int communicator_size;
size_t dsize, block_dsize;
#if 0
size_t total_dsize;
#endif
communicator_size = ompi_comm_size(comm);
/* special case */
if (communicator_size==2) {
return ompi_coll_tuned_alltoall_intra_two_procs(sbuf, scount, sdtype,
rbuf, rcount, rdtype,
comm, module);
}
/* Decision function based on measurement on Grig cluster at
the University of Tennessee (2GB MX) up to 64 nodes.
Has better performance for messages of intermediate sizes than the old one */
/* determine block size */
- Split the datatype engine into two parts: an MPI specific part in OMPI and a language agnostic part in OPAL. The convertor is completely moved into OPAL. This offers several benefits as described in RFC http://www.open-mpi.org/community/lists/devel/2009/07/6387.php namely: - Fewer basic types (int* and float* types, boolean and wchar - Fixing naming scheme to ompi-nomenclature. - Usability outside of the ompi-layer. - Due to the fixed nature of simple opal types, their information is completely known at compile time and therefore constified - With fewer datatypes (22), the actual sizes of bit-field types may be reduced from 64 to 32 bits, allowing reorganizing the opal_datatype structure, eliminating holes and keeping data required in convertor (upon send/recv) in one cacheline... This has implications to the convertor-datastructure and other parts of the code. - Several performance tests have been run, the netpipe latency does not change with this patch on Linux/x86-64 on the smoky cluster. - Extensive tests have been done to verify correctness (no new regressions) using: 1. mpi_test_suite on linux/x86-64 using clean ompi-trunk and ompi-ddt: a. running both trunk and ompi-ddt resulted in no differences (except for MPI_SHORT_INT and MPI_TYPE_MIX_LB_UB do now run correctly). b. with --enable-memchecker and running under valgrind (one buglet when run with static found in test-suite, commited) 2. ibm testsuite on linux/x86-64 using clean ompi-trunk and ompi-ddt: all passed (except for the dynamic/ tests failed!! as trunk/MTT) 3. compilation and usage of HDF5 tests on Jaguar using PGI and PathScale compilers. 4. compilation and usage on Scicortex. - Please note, that for the heterogeneous case, (-m32 compiled binaries/ompi), neither ompi-trunk, nor ompi-ddt branch would successfully launch. This commit was SVN r21641.
2009-07-13 08:56:31 +04:00
ompi_datatype_type_size(sdtype, &dsize);
block_dsize = dsize * (ptrdiff_t)scount;
if ((block_dsize < 200) && (communicator_size > 12)) {
return ompi_coll_tuned_alltoall_intra_bruck(sbuf, scount, sdtype,
rbuf, rcount, rdtype,
comm, module);
} else if (block_dsize < 3000) {
return ompi_coll_tuned_alltoall_intra_basic_linear(sbuf, scount, sdtype,
rbuf, rcount, rdtype,
comm, module);
}
return ompi_coll_tuned_alltoall_intra_pairwise (sbuf, scount, sdtype,
rbuf, rcount, rdtype,
comm, module);
#if 0
/* previous decision */
/* else we need data size for decision function */
- Split the datatype engine into two parts: an MPI specific part in OMPI and a language agnostic part in OPAL. The convertor is completely moved into OPAL. This offers several benefits as described in RFC http://www.open-mpi.org/community/lists/devel/2009/07/6387.php namely: - Fewer basic types (int* and float* types, boolean and wchar - Fixing naming scheme to ompi-nomenclature. - Usability outside of the ompi-layer. - Due to the fixed nature of simple opal types, their information is completely known at compile time and therefore constified - With fewer datatypes (22), the actual sizes of bit-field types may be reduced from 64 to 32 bits, allowing reorganizing the opal_datatype structure, eliminating holes and keeping data required in convertor (upon send/recv) in one cacheline... This has implications to the convertor-datastructure and other parts of the code. - Several performance tests have been run, the netpipe latency does not change with this patch on Linux/x86-64 on the smoky cluster. - Extensive tests have been done to verify correctness (no new regressions) using: 1. mpi_test_suite on linux/x86-64 using clean ompi-trunk and ompi-ddt: a. running both trunk and ompi-ddt resulted in no differences (except for MPI_SHORT_INT and MPI_TYPE_MIX_LB_UB do now run correctly). b. with --enable-memchecker and running under valgrind (one buglet when run with static found in test-suite, commited) 2. ibm testsuite on linux/x86-64 using clean ompi-trunk and ompi-ddt: all passed (except for the dynamic/ tests failed!! as trunk/MTT) 3. compilation and usage of HDF5 tests on Jaguar using PGI and PathScale compilers. 4. compilation and usage on Scicortex. - Please note, that for the heterogeneous case, (-m32 compiled binaries/ompi), neither ompi-trunk, nor ompi-ddt branch would successfully launch. This commit was SVN r21641.
2009-07-13 08:56:31 +04:00
ompi_datatype_type_size(sdtype, &dsize);
total_dsize = dsize * scount * communicator_size; /* needed for decision */
OPAL_OUTPUT((ompi_coll_tuned_stream, "ompi_coll_tuned_alltoall_intra_dec_fixed rank %d com_size %d msg_length %ld",
ompi_comm_rank(comm), communicator_size, total_dsize));
if (communicator_size >= 12 && total_dsize <= 768) {
return ompi_coll_tuned_alltoall_intra_bruck (sbuf, scount, sdtype, rbuf, rcount, rdtype, comm, module);
}
if (total_dsize <= 131072) {
return ompi_coll_tuned_alltoall_intra_basic_linear (sbuf, scount, sdtype, rbuf, rcount, rdtype, comm, module);
}
return ompi_coll_tuned_alltoall_intra_pairwise (sbuf, scount, sdtype, rbuf, rcount, rdtype, comm, module);
#endif
}
/*
* Function: - selects alltoallv algorithm to use
* Accepts: - same arguments as MPI_Alltoallv()
* Returns: - MPI_SUCCESS or error code
*/
int ompi_coll_tuned_alltoallv_intra_dec_fixed(void *sbuf, int *scounts, int *sdisps,
struct ompi_datatype_t *sdtype,
void *rbuf, int *rcounts, int *rdisps,
struct ompi_datatype_t *rdtype,
struct ompi_communicator_t *comm,
mca_coll_base_module_t *module)
{
/* For starters, just keep the original algorithm. */
return ompi_coll_tuned_alltoallv_intra_pairwise(sbuf, scounts, sdisps, sdtype,
rbuf, rcounts, rdisps,rdtype,
comm, module);
}
/*
* barrier_intra_dec
*
* Function: - seletects barrier algorithm to use
* Accepts: - same arguments as MPI_Barrier()
* Returns: - MPI_SUCCESS or error code (passed from the barrier implementation)
*/
int ompi_coll_tuned_barrier_intra_dec_fixed(struct ompi_communicator_t *comm,
mca_coll_base_module_t *module)
{
int communicator_size = ompi_comm_size(comm);
OPAL_OUTPUT((ompi_coll_tuned_stream, "ompi_coll_tuned_barrier_intra_dec_fixed com_size %d",
communicator_size));
if( 2 == communicator_size )
return ompi_coll_tuned_barrier_intra_two_procs(comm, module);
/**
* Basic optimisation. If we have a power of 2 number of nodes
* the use the recursive doubling algorithm, otherwise
* bruck is the one we want.
*/
{
bool has_one = false;
for( ; communicator_size > 0; communicator_size >>= 1 ) {
if( communicator_size & 0x1 ) {
if( has_one )
return ompi_coll_tuned_barrier_intra_bruck(comm, module);
has_one = true;
}
}
}
return ompi_coll_tuned_barrier_intra_recursivedoubling(comm, module);
/* return ompi_coll_tuned_barrier_intra_linear(comm); */
/* return ompi_coll_tuned_barrier_intra_doublering(comm); */
}
/*
* bcast_intra_dec
*
* Function: - seletects broadcast algorithm to use
* Accepts: - same arguments as MPI_Bcast()
* Returns: - MPI_SUCCESS or error code (passed from the bcast implementation)
*/
int ompi_coll_tuned_bcast_intra_dec_fixed(void *buff, int count,
struct ompi_datatype_t *datatype, int root,
struct ompi_communicator_t *comm,
mca_coll_base_module_t *module)
{
/* Decision function based on MX results for
messages up to 36MB and communicator sizes up to 64 nodes */
const size_t small_message_size = 2048;
const size_t intermediate_message_size = 370728;
const double a_p16 = 3.2118e-6; /* [1 / byte] */
const double b_p16 = 8.7936;
const double a_p64 = 2.3679e-6; /* [1 / byte] */
const double b_p64 = 1.1787;
const double a_p128 = 1.6134e-6; /* [1 / byte] */
const double b_p128 = 2.1102;
int communicator_size;
int segsize = 0;
size_t message_size, dsize;
communicator_size = ompi_comm_size(comm);
/* else we need data size for decision function */
- Split the datatype engine into two parts: an MPI specific part in OMPI and a language agnostic part in OPAL. The convertor is completely moved into OPAL. This offers several benefits as described in RFC http://www.open-mpi.org/community/lists/devel/2009/07/6387.php namely: - Fewer basic types (int* and float* types, boolean and wchar - Fixing naming scheme to ompi-nomenclature. - Usability outside of the ompi-layer. - Due to the fixed nature of simple opal types, their information is completely known at compile time and therefore constified - With fewer datatypes (22), the actual sizes of bit-field types may be reduced from 64 to 32 bits, allowing reorganizing the opal_datatype structure, eliminating holes and keeping data required in convertor (upon send/recv) in one cacheline... This has implications to the convertor-datastructure and other parts of the code. - Several performance tests have been run, the netpipe latency does not change with this patch on Linux/x86-64 on the smoky cluster. - Extensive tests have been done to verify correctness (no new regressions) using: 1. mpi_test_suite on linux/x86-64 using clean ompi-trunk and ompi-ddt: a. running both trunk and ompi-ddt resulted in no differences (except for MPI_SHORT_INT and MPI_TYPE_MIX_LB_UB do now run correctly). b. with --enable-memchecker and running under valgrind (one buglet when run with static found in test-suite, commited) 2. ibm testsuite on linux/x86-64 using clean ompi-trunk and ompi-ddt: all passed (except for the dynamic/ tests failed!! as trunk/MTT) 3. compilation and usage of HDF5 tests on Jaguar using PGI and PathScale compilers. 4. compilation and usage on Scicortex. - Please note, that for the heterogeneous case, (-m32 compiled binaries/ompi), neither ompi-trunk, nor ompi-ddt branch would successfully launch. This commit was SVN r21641.
2009-07-13 08:56:31 +04:00
ompi_datatype_type_size(datatype, &dsize);
message_size = dsize * (unsigned long)count; /* needed for decision */
OPAL_OUTPUT((ompi_coll_tuned_stream, "ompi_coll_tuned_bcast_intra_dec_fixed"
" root %d rank %d com_size %d msg_length %lu",
root, ompi_comm_rank(comm), communicator_size, (unsigned long)message_size));
/* Handle messages of small and intermediate size, and
single-element broadcasts */
if ((message_size < small_message_size) || (count <= 1)) {
/* Binomial without segmentation */
segsize = 0;
return ompi_coll_tuned_bcast_intra_binomial (buff, count, datatype,
root, comm, module,
segsize);
} else if (message_size < intermediate_message_size) {
/* SplittedBinary with 1KB segments */
segsize = 1024;
return ompi_coll_tuned_bcast_intra_split_bintree(buff, count, datatype,
root, comm, module,
segsize);
}
/* Handle large message sizes */
else if (communicator_size < (a_p128 * message_size + b_p128)) {
/* Pipeline with 128KB segments */
segsize = 1024 << 7;
return ompi_coll_tuned_bcast_intra_pipeline (buff, count, datatype,
root, comm, module,
segsize);
} else if (communicator_size < 13) {
/* Split Binary with 8KB segments */
segsize = 1024 << 3;
return ompi_coll_tuned_bcast_intra_split_bintree(buff, count, datatype,
root, comm, module,
segsize);
} else if (communicator_size < (a_p64 * message_size + b_p64)) {
/* Pipeline with 64KB segments */
segsize = 1024 << 6;
return ompi_coll_tuned_bcast_intra_pipeline (buff, count, datatype,
root, comm, module,
segsize);
} else if (communicator_size < (a_p16 * message_size + b_p16)) {
/* Pipeline with 16KB segments */
segsize = 1024 << 4;
return ompi_coll_tuned_bcast_intra_pipeline (buff, count, datatype,
root, comm, module,
segsize);
}
/* Pipeline with 8KB segments */
segsize = 1024 << 3;
return ompi_coll_tuned_bcast_intra_pipeline (buff, count, datatype,
root, comm, module,
segsize);
#if 0
/* this is based on gige measurements */
if (communicator_size < 4) {
return ompi_coll_tuned_bcast_intra_basic_linear (buff, count, datatype, root, comm, module);
}
if (communicator_size == 4) {
if (message_size < 524288) segsize = 0;
else segsize = 16384;
return ompi_coll_tuned_bcast_intra_bintree (buff, count, datatype, root, comm, module, segsize);
}
if (communicator_size <= 8 && message_size < 4096) {
return ompi_coll_tuned_bcast_intra_basic_linear (buff, count, datatype, root, comm, module);
}
if (communicator_size > 8 && message_size >= 32768 && message_size < 524288) {
segsize = 16384;
return ompi_coll_tuned_bcast_intra_bintree (buff, count, datatype, root, comm, module, segsize);
}
if (message_size >= 524288) {
segsize = 16384;
return ompi_coll_tuned_bcast_intra_pipeline (buff, count, datatype, root, comm, module, segsize);
}
segsize = 0;
/* once tested can swap this back in */
/* return ompi_coll_tuned_bcast_intra_bmtree (buff, count, datatype, root, comm, segsize); */
return ompi_coll_tuned_bcast_intra_bintree (buff, count, datatype, root, comm, module, segsize);
#endif /* 0 */
}
/*
* reduce_intra_dec
*
* Function: - seletects reduce algorithm to use
* Accepts: - same arguments as MPI_reduce()
* Returns: - MPI_SUCCESS or error code (passed from the reduce implementation)
*
*/
int ompi_coll_tuned_reduce_intra_dec_fixed( void *sendbuf, void *recvbuf,
int count, struct ompi_datatype_t* datatype,
struct ompi_op_t* op, int root,
struct ompi_communicator_t* comm,
mca_coll_base_module_t *module)
{
int communicator_size, segsize = 0;
size_t message_size, dsize;
const double a1 = 0.6016 / 1024.0; /* [1/B] */
const double b1 = 1.3496;
const double a2 = 0.0410 / 1024.0; /* [1/B] */
const double b2 = 9.7128;
const double a3 = 0.0422 / 1024.0; /* [1/B] */
const double b3 = 1.1614;
const double a4 = 0.0033 / 1024.0; /* [1/B] */
const double b4 = 1.6761;
Adding flow control for leaf nodes in generalized reduce structure. This "feature" is disabled by default and it should not affect the current performance. In case when the message size is large and segment size is smaller than eager size for particular interface, the leaf nodes in generalized reduce function can overflood parent nodes by sending all segments without any synchronization. This can cause the parent to have HIGH number of unexpected messages (think 16MB message with 1KB segments for example). In case of binomial algorithm root node always has at least one child which is leaf, so this can potentially affect the root's performance significantly [Especially in large communicators where root may have quite a few children (binomial tree for example)]. When the segment size is bigger than the eager size, rendezvous protocol ensures that this does not happen so it is not necessary. Originally, the problem was exposed in "infinite" bucket allocator clean up time for "small" segment sizes (which may explain some "deadlocks" on Thunderbird tests). To prevent this, we allow user to specify mca parameter "--mca coll_tuned_reduce_algorithm_max_requests NUM" this limits number of outstanding messages from a leaf node in generalized reduce to the parent to NUM. Messages are sent as non-blocking synchrnous messages, so syncronization happens at "wait" time. The synchronization actually improved performance of pipeline and binomial algorithm for large message sizes with 1KB segments over MX, but I need to test it some more to make sure it is consistent. Since there is no easy way to find out what is "the eager" size for particular btl, I set the limit to 4000B. If message/individual segment size is greater than 4000B - we will not use this feature. This variable may or may not be exposed as mca parameter later... I did not have any problems running it and both "default" and "synchronous" tests passed Intel Reduce* tests up to 80 processes (over MX). This commit was SVN r14518.
2007-04-26 00:39:53 +04:00
const int max_requests = 0; /* no limit on # of outstanding requests */
communicator_size = ompi_comm_size(comm);
/* need data size for decision function */
- Split the datatype engine into two parts: an MPI specific part in OMPI and a language agnostic part in OPAL. The convertor is completely moved into OPAL. This offers several benefits as described in RFC http://www.open-mpi.org/community/lists/devel/2009/07/6387.php namely: - Fewer basic types (int* and float* types, boolean and wchar - Fixing naming scheme to ompi-nomenclature. - Usability outside of the ompi-layer. - Due to the fixed nature of simple opal types, their information is completely known at compile time and therefore constified - With fewer datatypes (22), the actual sizes of bit-field types may be reduced from 64 to 32 bits, allowing reorganizing the opal_datatype structure, eliminating holes and keeping data required in convertor (upon send/recv) in one cacheline... This has implications to the convertor-datastructure and other parts of the code. - Several performance tests have been run, the netpipe latency does not change with this patch on Linux/x86-64 on the smoky cluster. - Extensive tests have been done to verify correctness (no new regressions) using: 1. mpi_test_suite on linux/x86-64 using clean ompi-trunk and ompi-ddt: a. running both trunk and ompi-ddt resulted in no differences (except for MPI_SHORT_INT and MPI_TYPE_MIX_LB_UB do now run correctly). b. with --enable-memchecker and running under valgrind (one buglet when run with static found in test-suite, commited) 2. ibm testsuite on linux/x86-64 using clean ompi-trunk and ompi-ddt: all passed (except for the dynamic/ tests failed!! as trunk/MTT) 3. compilation and usage of HDF5 tests on Jaguar using PGI and PathScale compilers. 4. compilation and usage on Scicortex. - Please note, that for the heterogeneous case, (-m32 compiled binaries/ompi), neither ompi-trunk, nor ompi-ddt branch would successfully launch. This commit was SVN r21641.
2009-07-13 08:56:31 +04:00
ompi_datatype_type_size(datatype, &dsize);
message_size = dsize * (ptrdiff_t)count; /* needed for decision */
/**
* If the operation is non commutative we currently have choice of linear
* or in-order binary tree algorithm.
*/
if( !ompi_op_is_commute(op) ) {
if ((communicator_size < 12) && (message_size < 2048)) {
return ompi_coll_tuned_reduce_intra_basic_linear (sendbuf, recvbuf, count, datatype, op, root, comm, module);
}
return ompi_coll_tuned_reduce_intra_in_order_binary (sendbuf, recvbuf, count, datatype, op, root, comm, module,
0, max_requests);
}
OPAL_OUTPUT((ompi_coll_tuned_stream, "ompi_coll_tuned_reduce_intra_dec_fixed "
"root %d rank %d com_size %d msg_length %lu",
root, ompi_comm_rank(comm), communicator_size, (unsigned long)message_size));
if ((communicator_size < 8) && (message_size < 512)){
/* Linear_0K */
return ompi_coll_tuned_reduce_intra_basic_linear (sendbuf, recvbuf, count, datatype, op, root, comm, module);
} else if (((communicator_size < 8) && (message_size < 20480)) ||
(message_size < 2048) || (count <= 1)) {
/* Binomial_0K */
segsize = 0;
return ompi_coll_tuned_reduce_intra_binomial(sendbuf, recvbuf, count, datatype, op, root, comm, module,
segsize, max_requests);
} else if (communicator_size > (a1 * message_size + b1)) {
/* Binomial_1K */
segsize = 1024;
return ompi_coll_tuned_reduce_intra_binomial(sendbuf, recvbuf, count, datatype, op, root, comm, module,
segsize, max_requests);
} else if (communicator_size > (a2 * message_size + b2)) {
/* Pipeline_1K */
segsize = 1024;
return ompi_coll_tuned_reduce_intra_pipeline (sendbuf, recvbuf, count, datatype, op, root, comm, module,
segsize, max_requests);
} else if (communicator_size > (a3 * message_size + b3)) {
/* Binary_32K */
segsize = 32*1024;
return ompi_coll_tuned_reduce_intra_binary( sendbuf, recvbuf, count, datatype, op, root,
comm, module, segsize, max_requests);
}
if (communicator_size > (a4 * message_size + b4)) {
/* Pipeline_32K */
segsize = 32*1024;
} else {
/* Pipeline_64K */
segsize = 64*1024;
}
return ompi_coll_tuned_reduce_intra_pipeline (sendbuf, recvbuf, count, datatype, op, root, comm, module,
segsize, max_requests);
#if 0
/* for small messages use linear algorithm */
if (message_size <= 4096) {
segsize = 0;
fanout = communicator_size - 1;
/* when linear implemented or taken from basic put here, right now using chain as a linear system */
/* it is implemented and I shouldn't be calling a chain with a fanout bigger than MAXTREEFANOUT from topo.h! */
return ompi_coll_tuned_reduce_intra_basic_linear (sendbuf, recvbuf, count, datatype, op, root, comm, module);
/* return ompi_coll_tuned_reduce_intra_chain (sendbuf, recvbuf, count, datatype, op, root, comm, segsize, fanout); */
}
if (message_size < 524288) {
if (message_size <= 65536 ) {
segsize = 32768;
fanout = 8;
} else {
segsize = 1024;
fanout = communicator_size/2;
}
/* later swap this for a binary tree */
/* fanout = 2; */
return ompi_coll_tuned_reduce_intra_chain (sendbuf, recvbuf, count, datatype, op, root, comm, module,
segsize, fanout, max_requests);
}
segsize = 1024;
return ompi_coll_tuned_reduce_intra_pipeline (sendbuf, recvbuf, count, datatype, op, root, comm, module,
segsize, max_requests);
#endif /* 0 */
}
/*
* reduce_scatter_intra_dec
*
* Function: - seletects reduce_scatter algorithm to use
* Accepts: - same arguments as MPI_Reduce_scatter()
* Returns: - MPI_SUCCESS or error code (passed from
* the reduce scatter implementation)
* Note: If we detect zero valued counts in the rcounts array, we
* fall back to the nonoverlapping algorithm because the other
* algorithms do not currently handle it.
*/
int ompi_coll_tuned_reduce_scatter_intra_dec_fixed( void *sbuf, void *rbuf,
int *rcounts,
struct ompi_datatype_t *dtype,
struct ompi_op_t *op,
struct ompi_communicator_t *comm,
mca_coll_base_module_t *module)
{
int comm_size, i, pow2;
size_t total_message_size, dsize;
const double a = 0.0012;
const double b = 8.0;
const size_t small_message_size = 12 * 1024;
const size_t large_message_size = 256 * 1024;
bool zerocounts = false;
OPAL_OUTPUT((ompi_coll_tuned_stream, "ompi_coll_tuned_reduce_scatter_intra_dec_fixed"));
comm_size = ompi_comm_size(comm);
/* We need data size for decision function */
ompi_datatype_type_size(dtype, &dsize);
total_message_size = 0;
for (i = 0; i < comm_size; i++) {
total_message_size += rcounts[i];
if (0 == rcounts[i]) {
zerocounts = true;
}
}
if( !ompi_op_is_commute(op) || (zerocounts)) {
return ompi_coll_tuned_reduce_scatter_intra_nonoverlapping (sbuf, rbuf, rcounts,
dtype, op,
comm, module);
}
total_message_size *= dsize;
/* compute the nearest power of 2 */
pow2 = opal_next_poweroftwo_inclusive (comm_size);
if ((total_message_size <= small_message_size) ||
((total_message_size <= large_message_size) && (pow2 == comm_size)) ||
(comm_size >= a * total_message_size + b)) {
return
ompi_coll_tuned_reduce_scatter_intra_basic_recursivehalving(sbuf, rbuf, rcounts,
dtype, op,
comm, module);
}
return ompi_coll_tuned_reduce_scatter_intra_ring(sbuf, rbuf, rcounts,
dtype, op,
comm, module);
}
/*
* allgather_intra_dec
*
* Function: - seletects allgather algorithm to use
* Accepts: - same arguments as MPI_Allgather()
* Returns: - MPI_SUCCESS or error code, passed from corresponding
* internal allgather function.
*/
int ompi_coll_tuned_allgather_intra_dec_fixed(void *sbuf, int scount,
struct ompi_datatype_t *sdtype,
void* rbuf, int rcount,
struct ompi_datatype_t *rdtype,
struct ompi_communicator_t *comm,
mca_coll_base_module_t *module)
{
int communicator_size, pow2_size;
size_t dsize, total_dsize;
communicator_size = ompi_comm_size(comm);
/* Special case for 2 processes */
if (communicator_size == 2) {
return ompi_coll_tuned_allgather_intra_two_procs (sbuf, scount, sdtype,
rbuf, rcount, rdtype,
comm, module);
}
/* Determine complete data size */
ompi_datatype_type_size(sdtype, &dsize);
total_dsize = dsize * (ptrdiff_t)scount * (ptrdiff_t)communicator_size;
OPAL_OUTPUT((ompi_coll_tuned_stream, "ompi_coll_tuned_allgather_intra_dec_fixed"
" rank %d com_size %d msg_length %lu",
ompi_comm_rank(comm), communicator_size, (unsigned long)total_dsize));
pow2_size = opal_next_poweroftwo_inclusive (communicator_size);
/* Decision based on MX 2Gb results from Grig cluster at
The University of Tennesse, Knoxville
- if total message size is less than 50KB use either bruck or
recursive doubling for non-power of two and power of two nodes,
respectively.
- else use ring and neighbor exchange algorithms for odd and even
number of nodes, respectively.
*/
if (total_dsize < 50000) {
if (pow2_size == communicator_size) {
return ompi_coll_tuned_allgather_intra_recursivedoubling(sbuf, scount, sdtype,
rbuf, rcount, rdtype,
comm, module);
} else {
return ompi_coll_tuned_allgather_intra_bruck(sbuf, scount, sdtype,
rbuf, rcount, rdtype,
comm, module);
}
} else {
if (communicator_size % 2) {
return ompi_coll_tuned_allgather_intra_ring(sbuf, scount, sdtype,
rbuf, rcount, rdtype,
comm, module);
} else {
return ompi_coll_tuned_allgather_intra_neighborexchange(sbuf, scount, sdtype,
rbuf, rcount, rdtype,
comm, module);
}
}
#if defined(USE_MPICH2_DECISION)
/* Decision as in MPICH-2
presented in Thakur et.al. "Optimization of Collective Communication
Operations in MPICH", International Journal of High Performance Computing
Applications, Vol. 19, No. 1, 49-66 (2005)
- for power-of-two processes and small and medium size messages
(up to 512KB) use recursive doubling
- for non-power-of-two processes and small messages (80KB) use bruck,
- for everything else use ring.
*/
if ((pow2_size == communicator_size) && (total_dsize < 524288)) {
return ompi_coll_tuned_allgather_intra_recursivedoubling(sbuf, scount, sdtype,
rbuf, rcount, rdtype,
comm, module);
} else if (total_dsize <= 81920) {
return ompi_coll_tuned_allgather_intra_bruck(sbuf, scount, sdtype,
rbuf, rcount, rdtype,
comm, module);
}
return ompi_coll_tuned_allgather_intra_ring(sbuf, scount, sdtype,
rbuf, rcount, rdtype,
comm, module);
#endif /* defined(USE_MPICH2_DECISION) */
}
/*
* allgatherv_intra_dec
*
* Function: - seletects allgatherv algorithm to use
* Accepts: - same arguments as MPI_Allgatherv()
* Returns: - MPI_SUCCESS or error code, passed from corresponding
* internal allgatherv function.
*/
int ompi_coll_tuned_allgatherv_intra_dec_fixed(void *sbuf, int scount,
struct ompi_datatype_t *sdtype,
void* rbuf, int *rcounts,
int *rdispls,
struct ompi_datatype_t *rdtype,
struct ompi_communicator_t *comm,
mca_coll_base_module_t *module)
{
int i;
int communicator_size;
size_t dsize, total_dsize;
communicator_size = ompi_comm_size(comm);
/* Special case for 2 processes */
if (communicator_size == 2) {
return ompi_coll_tuned_allgatherv_intra_two_procs (sbuf, scount, sdtype,
rbuf, rcounts, rdispls, rdtype,
comm, module);
}
/* Determine complete data size */
- Split the datatype engine into two parts: an MPI specific part in OMPI and a language agnostic part in OPAL. The convertor is completely moved into OPAL. This offers several benefits as described in RFC http://www.open-mpi.org/community/lists/devel/2009/07/6387.php namely: - Fewer basic types (int* and float* types, boolean and wchar - Fixing naming scheme to ompi-nomenclature. - Usability outside of the ompi-layer. - Due to the fixed nature of simple opal types, their information is completely known at compile time and therefore constified - With fewer datatypes (22), the actual sizes of bit-field types may be reduced from 64 to 32 bits, allowing reorganizing the opal_datatype structure, eliminating holes and keeping data required in convertor (upon send/recv) in one cacheline... This has implications to the convertor-datastructure and other parts of the code. - Several performance tests have been run, the netpipe latency does not change with this patch on Linux/x86-64 on the smoky cluster. - Extensive tests have been done to verify correctness (no new regressions) using: 1. mpi_test_suite on linux/x86-64 using clean ompi-trunk and ompi-ddt: a. running both trunk and ompi-ddt resulted in no differences (except for MPI_SHORT_INT and MPI_TYPE_MIX_LB_UB do now run correctly). b. with --enable-memchecker and running under valgrind (one buglet when run with static found in test-suite, commited) 2. ibm testsuite on linux/x86-64 using clean ompi-trunk and ompi-ddt: all passed (except for the dynamic/ tests failed!! as trunk/MTT) 3. compilation and usage of HDF5 tests on Jaguar using PGI and PathScale compilers. 4. compilation and usage on Scicortex. - Please note, that for the heterogeneous case, (-m32 compiled binaries/ompi), neither ompi-trunk, nor ompi-ddt branch would successfully launch. This commit was SVN r21641.
2009-07-13 08:56:31 +04:00
ompi_datatype_type_size(sdtype, &dsize);
total_dsize = 0;
for (i = 0; i < communicator_size; i++) {
total_dsize += dsize * (ptrdiff_t)rcounts[i];
}
OPAL_OUTPUT((ompi_coll_tuned_stream,
"ompi_coll_tuned_allgatherv_intra_dec_fixed"
" rank %d com_size %d msg_length %lu",
ompi_comm_rank(comm), communicator_size, (unsigned long)total_dsize));
/* Decision based on allgather decision. */
if (total_dsize < 50000) {
return ompi_coll_tuned_allgatherv_intra_bruck(sbuf, scount, sdtype,
rbuf, rcounts, rdispls, rdtype,
comm, module);
} else {
if (communicator_size % 2) {
return ompi_coll_tuned_allgatherv_intra_ring(sbuf, scount, sdtype,
rbuf, rcounts, rdispls, rdtype,
comm, module);
} else {
return ompi_coll_tuned_allgatherv_intra_neighborexchange(sbuf, scount, sdtype,
rbuf, rcounts, rdispls, rdtype,
comm, module);
}
}
}
/*
* gather_intra_dec
*
* Function: - seletects gather algorithm to use
* Accepts: - same arguments as MPI_Gather()
* Returns: - MPI_SUCCESS or error code, passed from corresponding
* internal allgather function.
*/
int ompi_coll_tuned_gather_intra_dec_fixed(void *sbuf, int scount,
struct ompi_datatype_t *sdtype,
void* rbuf, int rcount,
struct ompi_datatype_t *rdtype,
int root,
struct ompi_communicator_t *comm,
mca_coll_base_module_t *module)
{
const int large_segment_size = 32768;
const int small_segment_size = 1024;
const size_t large_block_size = 92160;
const size_t intermediate_block_size = 6000;
const size_t small_block_size = 1024;
const int large_communicator_size = 60;
const int small_communicator_size = 10;
int communicator_size, rank;
size_t dsize, block_size;
OPAL_OUTPUT((ompi_coll_tuned_stream,
"ompi_coll_tuned_gather_intra_dec_fixed"));
communicator_size = ompi_comm_size(comm);
rank = ompi_comm_rank(comm);
/* Determine block size */
if (rank == root) {
- Split the datatype engine into two parts: an MPI specific part in OMPI and a language agnostic part in OPAL. The convertor is completely moved into OPAL. This offers several benefits as described in RFC http://www.open-mpi.org/community/lists/devel/2009/07/6387.php namely: - Fewer basic types (int* and float* types, boolean and wchar - Fixing naming scheme to ompi-nomenclature. - Usability outside of the ompi-layer. - Due to the fixed nature of simple opal types, their information is completely known at compile time and therefore constified - With fewer datatypes (22), the actual sizes of bit-field types may be reduced from 64 to 32 bits, allowing reorganizing the opal_datatype structure, eliminating holes and keeping data required in convertor (upon send/recv) in one cacheline... This has implications to the convertor-datastructure and other parts of the code. - Several performance tests have been run, the netpipe latency does not change with this patch on Linux/x86-64 on the smoky cluster. - Extensive tests have been done to verify correctness (no new regressions) using: 1. mpi_test_suite on linux/x86-64 using clean ompi-trunk and ompi-ddt: a. running both trunk and ompi-ddt resulted in no differences (except for MPI_SHORT_INT and MPI_TYPE_MIX_LB_UB do now run correctly). b. with --enable-memchecker and running under valgrind (one buglet when run with static found in test-suite, commited) 2. ibm testsuite on linux/x86-64 using clean ompi-trunk and ompi-ddt: all passed (except for the dynamic/ tests failed!! as trunk/MTT) 3. compilation and usage of HDF5 tests on Jaguar using PGI and PathScale compilers. 4. compilation and usage on Scicortex. - Please note, that for the heterogeneous case, (-m32 compiled binaries/ompi), neither ompi-trunk, nor ompi-ddt branch would successfully launch. This commit was SVN r21641.
2009-07-13 08:56:31 +04:00
ompi_datatype_type_size(rdtype, &dsize);
block_size = dsize * (ptrdiff_t)rcount;
} else {
- Split the datatype engine into two parts: an MPI specific part in OMPI and a language agnostic part in OPAL. The convertor is completely moved into OPAL. This offers several benefits as described in RFC http://www.open-mpi.org/community/lists/devel/2009/07/6387.php namely: - Fewer basic types (int* and float* types, boolean and wchar - Fixing naming scheme to ompi-nomenclature. - Usability outside of the ompi-layer. - Due to the fixed nature of simple opal types, their information is completely known at compile time and therefore constified - With fewer datatypes (22), the actual sizes of bit-field types may be reduced from 64 to 32 bits, allowing reorganizing the opal_datatype structure, eliminating holes and keeping data required in convertor (upon send/recv) in one cacheline... This has implications to the convertor-datastructure and other parts of the code. - Several performance tests have been run, the netpipe latency does not change with this patch on Linux/x86-64 on the smoky cluster. - Extensive tests have been done to verify correctness (no new regressions) using: 1. mpi_test_suite on linux/x86-64 using clean ompi-trunk and ompi-ddt: a. running both trunk and ompi-ddt resulted in no differences (except for MPI_SHORT_INT and MPI_TYPE_MIX_LB_UB do now run correctly). b. with --enable-memchecker and running under valgrind (one buglet when run with static found in test-suite, commited) 2. ibm testsuite on linux/x86-64 using clean ompi-trunk and ompi-ddt: all passed (except for the dynamic/ tests failed!! as trunk/MTT) 3. compilation and usage of HDF5 tests on Jaguar using PGI and PathScale compilers. 4. compilation and usage on Scicortex. - Please note, that for the heterogeneous case, (-m32 compiled binaries/ompi), neither ompi-trunk, nor ompi-ddt branch would successfully launch. This commit was SVN r21641.
2009-07-13 08:56:31 +04:00
ompi_datatype_type_size(sdtype, &dsize);
block_size = dsize * (ptrdiff_t)scount;
}
if (block_size > large_block_size) {
return ompi_coll_tuned_gather_intra_linear_sync (sbuf, scount, sdtype,
rbuf, rcount, rdtype,
root, comm, module,
large_segment_size);
} else if (block_size > intermediate_block_size) {
return ompi_coll_tuned_gather_intra_linear_sync (sbuf, scount, sdtype,
rbuf, rcount, rdtype,
root, comm, module,
small_segment_size);
} else if ((communicator_size > large_communicator_size) ||
((communicator_size > small_communicator_size) &&
(block_size < small_block_size))) {
return ompi_coll_tuned_gather_intra_binomial (sbuf, scount, sdtype,
rbuf, rcount, rdtype,
root, comm, module);
}
/* Otherwise, use basic linear */
return ompi_coll_tuned_gather_intra_basic_linear (sbuf, scount, sdtype,
rbuf, rcount, rdtype,
root, comm, module);
}
/*
* scatter_intra_dec
*
* Function: - seletects scatter algorithm to use
* Accepts: - same arguments as MPI_Scatter()
* Returns: - MPI_SUCCESS or error code, passed from corresponding
* internal allgather function.
*/
int ompi_coll_tuned_scatter_intra_dec_fixed(void *sbuf, int scount,
struct ompi_datatype_t *sdtype,
void* rbuf, int rcount,
struct ompi_datatype_t *rdtype,
int root, struct ompi_communicator_t *comm,
mca_coll_base_module_t *module)
{
const size_t small_block_size = 300;
const int small_comm_size = 10;
int communicator_size, rank;
size_t dsize, block_size;
OPAL_OUTPUT((ompi_coll_tuned_stream,
"ompi_coll_tuned_scatter_intra_dec_fixed"));
communicator_size = ompi_comm_size(comm);
rank = ompi_comm_rank(comm);
/* Determine block size */
if (root == rank) {
- Split the datatype engine into two parts: an MPI specific part in OMPI and a language agnostic part in OPAL. The convertor is completely moved into OPAL. This offers several benefits as described in RFC http://www.open-mpi.org/community/lists/devel/2009/07/6387.php namely: - Fewer basic types (int* and float* types, boolean and wchar - Fixing naming scheme to ompi-nomenclature. - Usability outside of the ompi-layer. - Due to the fixed nature of simple opal types, their information is completely known at compile time and therefore constified - With fewer datatypes (22), the actual sizes of bit-field types may be reduced from 64 to 32 bits, allowing reorganizing the opal_datatype structure, eliminating holes and keeping data required in convertor (upon send/recv) in one cacheline... This has implications to the convertor-datastructure and other parts of the code. - Several performance tests have been run, the netpipe latency does not change with this patch on Linux/x86-64 on the smoky cluster. - Extensive tests have been done to verify correctness (no new regressions) using: 1. mpi_test_suite on linux/x86-64 using clean ompi-trunk and ompi-ddt: a. running both trunk and ompi-ddt resulted in no differences (except for MPI_SHORT_INT and MPI_TYPE_MIX_LB_UB do now run correctly). b. with --enable-memchecker and running under valgrind (one buglet when run with static found in test-suite, commited) 2. ibm testsuite on linux/x86-64 using clean ompi-trunk and ompi-ddt: all passed (except for the dynamic/ tests failed!! as trunk/MTT) 3. compilation and usage of HDF5 tests on Jaguar using PGI and PathScale compilers. 4. compilation and usage on Scicortex. - Please note, that for the heterogeneous case, (-m32 compiled binaries/ompi), neither ompi-trunk, nor ompi-ddt branch would successfully launch. This commit was SVN r21641.
2009-07-13 08:56:31 +04:00
ompi_datatype_type_size(sdtype, &dsize);
block_size = dsize * (ptrdiff_t)scount;
} else {
- Split the datatype engine into two parts: an MPI specific part in OMPI and a language agnostic part in OPAL. The convertor is completely moved into OPAL. This offers several benefits as described in RFC http://www.open-mpi.org/community/lists/devel/2009/07/6387.php namely: - Fewer basic types (int* and float* types, boolean and wchar - Fixing naming scheme to ompi-nomenclature. - Usability outside of the ompi-layer. - Due to the fixed nature of simple opal types, their information is completely known at compile time and therefore constified - With fewer datatypes (22), the actual sizes of bit-field types may be reduced from 64 to 32 bits, allowing reorganizing the opal_datatype structure, eliminating holes and keeping data required in convertor (upon send/recv) in one cacheline... This has implications to the convertor-datastructure and other parts of the code. - Several performance tests have been run, the netpipe latency does not change with this patch on Linux/x86-64 on the smoky cluster. - Extensive tests have been done to verify correctness (no new regressions) using: 1. mpi_test_suite on linux/x86-64 using clean ompi-trunk and ompi-ddt: a. running both trunk and ompi-ddt resulted in no differences (except for MPI_SHORT_INT and MPI_TYPE_MIX_LB_UB do now run correctly). b. with --enable-memchecker and running under valgrind (one buglet when run with static found in test-suite, commited) 2. ibm testsuite on linux/x86-64 using clean ompi-trunk and ompi-ddt: all passed (except for the dynamic/ tests failed!! as trunk/MTT) 3. compilation and usage of HDF5 tests on Jaguar using PGI and PathScale compilers. 4. compilation and usage on Scicortex. - Please note, that for the heterogeneous case, (-m32 compiled binaries/ompi), neither ompi-trunk, nor ompi-ddt branch would successfully launch. This commit was SVN r21641.
2009-07-13 08:56:31 +04:00
ompi_datatype_type_size(rdtype, &dsize);
block_size = dsize * (ptrdiff_t)rcount;
}
if ((communicator_size > small_comm_size) &&
(block_size < small_block_size)) {
return ompi_coll_tuned_scatter_intra_binomial (sbuf, scount, sdtype,
rbuf, rcount, rdtype,
root, comm, module);
}
return ompi_coll_tuned_scatter_intra_basic_linear (sbuf, scount, sdtype,
rbuf, rcount, rdtype,
root, comm, module);
}