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openmpi/ompi/mca/coll/base/coll_base_gather.c

591 строка
26 KiB
C
Исходник Обычный вид История

MCA/base: Add new MCA variable system Features: - Support for an override parameter file (openmpi-mca-param-override.conf). Variable values in this file can not be overridden by any file or environment value. - Support for boolean, unsigned, and unsigned long long variables. - Support for true/false values. - Support for enumerations on integer variables. - Support for MPIT scope, verbosity, and binding. - Support for command line source. - Support for setting variable source via the environment using OMPI_MCA_SOURCE_<var name>=source (either command or file:filename) - Cleaner API. - Support for variable groups (equivalent to MPIT categories). Notes: - Variables must be created with a backing store (char **, int *, or bool *) that must live at least as long as the variable. - Creating a variable with the MCA_BASE_VAR_FLAG_SETTABLE enables the use of mca_base_var_set_value() to change the value. - String values are duplicated when the variable is registered. It is up to the caller to free the original value if necessary. The new value will be freed by the mca_base_var system and must not be freed by the user. - Variables with constant scope may not be settable. - Variable groups (and all associated variables) are deregistered when the component is closed or the component repository item is freed. This prevents a segmentation fault from accessing a variable after its component is unloaded. - After some discussion we decided we should remove the automatic registration of component priority variables. Few component actually made use of this feature. - The enumerator interface was updated to be general enough to handle future uses of the interface. - The code to generate ompi_info output has been moved into the MCA variable system. See mca_base_var_dump(). opal: update core and components to mca_base_var system orte: update core and components to mca_base_var system ompi: update core and components to mca_base_var system This commit also modifies the rmaps framework. The following variables were moved from ppr and lama: rmaps_base_pernode, rmaps_base_n_pernode, rmaps_base_n_persocket. Both lama and ppr create synonyms for these variables. This commit was SVN r28236.
2013-03-28 01:09:41 +04:00
/* -*- Mode: C; c-basic-offset:4 ; indent-tabs-mode:nil -*- */
/*
* Copyright (c) 2004-2005 The Trustees of Indiana University and Indiana
* University Research and Technology
* Corporation. All rights reserved.
* Copyright (c) 2004-2014 The University of Tennessee and The University
* of Tennessee Research Foundation. All rights
* reserved.
* Copyright (c) 2004-2005 High Performance Computing Center Stuttgart,
* University of Stuttgart. All rights reserved.
* Copyright (c) 2004-2005 The Regents of the University of California.
* All rights reserved.
MCA/base: Add new MCA variable system Features: - Support for an override parameter file (openmpi-mca-param-override.conf). Variable values in this file can not be overridden by any file or environment value. - Support for boolean, unsigned, and unsigned long long variables. - Support for true/false values. - Support for enumerations on integer variables. - Support for MPIT scope, verbosity, and binding. - Support for command line source. - Support for setting variable source via the environment using OMPI_MCA_SOURCE_<var name>=source (either command or file:filename) - Cleaner API. - Support for variable groups (equivalent to MPIT categories). Notes: - Variables must be created with a backing store (char **, int *, or bool *) that must live at least as long as the variable. - Creating a variable with the MCA_BASE_VAR_FLAG_SETTABLE enables the use of mca_base_var_set_value() to change the value. - String values are duplicated when the variable is registered. It is up to the caller to free the original value if necessary. The new value will be freed by the mca_base_var system and must not be freed by the user. - Variables with constant scope may not be settable. - Variable groups (and all associated variables) are deregistered when the component is closed or the component repository item is freed. This prevents a segmentation fault from accessing a variable after its component is unloaded. - After some discussion we decided we should remove the automatic registration of component priority variables. Few component actually made use of this feature. - The enumerator interface was updated to be general enough to handle future uses of the interface. - The code to generate ompi_info output has been moved into the MCA variable system. See mca_base_var_dump(). opal: update core and components to mca_base_var system orte: update core and components to mca_base_var system ompi: update core and components to mca_base_var system This commit also modifies the rmaps framework. The following variables were moved from ppr and lama: rmaps_base_pernode, rmaps_base_n_pernode, rmaps_base_n_persocket. Both lama and ppr create synonyms for these variables. This commit was SVN r28236.
2013-03-28 01:09:41 +04:00
* Copyright (c) 2013 Los Alamos National Security, LLC. All Rights
* reserved.
* Copyright (c) 2015 Research Organization for Information Science
* and Technology (RIST). All rights reserved.
* $COPYRIGHT$
*
* Additional copyrights may follow
*
* $HEADER$
*/
#include "ompi_config.h"
#include "mpi.h"
#include "ompi/constants.h"
- Split the datatype engine into two parts: an MPI specific part in OMPI and a language agnostic part in OPAL. The convertor is completely moved into OPAL. This offers several benefits as described in RFC http://www.open-mpi.org/community/lists/devel/2009/07/6387.php namely: - Fewer basic types (int* and float* types, boolean and wchar - Fixing naming scheme to ompi-nomenclature. - Usability outside of the ompi-layer. - Due to the fixed nature of simple opal types, their information is completely known at compile time and therefore constified - With fewer datatypes (22), the actual sizes of bit-field types may be reduced from 64 to 32 bits, allowing reorganizing the opal_datatype structure, eliminating holes and keeping data required in convertor (upon send/recv) in one cacheline... This has implications to the convertor-datastructure and other parts of the code. - Several performance tests have been run, the netpipe latency does not change with this patch on Linux/x86-64 on the smoky cluster. - Extensive tests have been done to verify correctness (no new regressions) using: 1. mpi_test_suite on linux/x86-64 using clean ompi-trunk and ompi-ddt: a. running both trunk and ompi-ddt resulted in no differences (except for MPI_SHORT_INT and MPI_TYPE_MIX_LB_UB do now run correctly). b. with --enable-memchecker and running under valgrind (one buglet when run with static found in test-suite, commited) 2. ibm testsuite on linux/x86-64 using clean ompi-trunk and ompi-ddt: all passed (except for the dynamic/ tests failed!! as trunk/MTT) 3. compilation and usage of HDF5 tests on Jaguar using PGI and PathScale compilers. 4. compilation and usage on Scicortex. - Please note, that for the heterogeneous case, (-m32 compiled binaries/ompi), neither ompi-trunk, nor ompi-ddt branch would successfully launch. This commit was SVN r21641.
2009-07-13 08:56:31 +04:00
#include "ompi/datatype/ompi_datatype.h"
#include "ompi/communicator/communicator.h"
#include "ompi/mca/coll/coll.h"
#include "ompi/mca/coll/base/coll_tags.h"
#include "ompi/mca/pml/pml.h"
#include "coll_tuned.h"
#include "coll_tuned_topo.h"
#include "coll_tuned_util.h"
MCA/base: Add new MCA variable system Features: - Support for an override parameter file (openmpi-mca-param-override.conf). Variable values in this file can not be overridden by any file or environment value. - Support for boolean, unsigned, and unsigned long long variables. - Support for true/false values. - Support for enumerations on integer variables. - Support for MPIT scope, verbosity, and binding. - Support for command line source. - Support for setting variable source via the environment using OMPI_MCA_SOURCE_<var name>=source (either command or file:filename) - Cleaner API. - Support for variable groups (equivalent to MPIT categories). Notes: - Variables must be created with a backing store (char **, int *, or bool *) that must live at least as long as the variable. - Creating a variable with the MCA_BASE_VAR_FLAG_SETTABLE enables the use of mca_base_var_set_value() to change the value. - String values are duplicated when the variable is registered. It is up to the caller to free the original value if necessary. The new value will be freed by the mca_base_var system and must not be freed by the user. - Variables with constant scope may not be settable. - Variable groups (and all associated variables) are deregistered when the component is closed or the component repository item is freed. This prevents a segmentation fault from accessing a variable after its component is unloaded. - After some discussion we decided we should remove the automatic registration of component priority variables. Few component actually made use of this feature. - The enumerator interface was updated to be general enough to handle future uses of the interface. - The code to generate ompi_info output has been moved into the MCA variable system. See mca_base_var_dump(). opal: update core and components to mca_base_var system orte: update core and components to mca_base_var system ompi: update core and components to mca_base_var system This commit also modifies the rmaps framework. The following variables were moved from ppr and lama: rmaps_base_pernode, rmaps_base_n_pernode, rmaps_base_n_persocket. Both lama and ppr create synonyms for these variables. This commit was SVN r28236.
2013-03-28 01:09:41 +04:00
/* gather algorithm variables */
static int coll_tuned_gather_algorithm_count = 3;
static int coll_tuned_gather_forced_algorithm = 0;
static int coll_tuned_gather_segment_size = 0;
static int coll_tuned_gather_tree_fanout;
static int coll_tuned_gather_chain_fanout;
/* valid values for coll_tuned_gather_forced_algorithm */
static mca_base_var_enum_value_t gather_algorithms[] = {
{0, "ignore"},
{1, "basic_linear"},
{2, "binomial"},
{3, "linear_sync"},
{0, NULL}
};
/* Todo: gather_intra_generic, gather_intra_binary, gather_intra_chain,
* gather_intra_pipeline, segmentation? */
int
ompi_coll_tuned_gather_intra_binomial(void *sbuf, int scount,
struct ompi_datatype_t *sdtype,
void *rbuf, int rcount,
struct ompi_datatype_t *rdtype,
int root,
struct ompi_communicator_t *comm,
mca_coll_base_module_t *module)
{
int line = -1, i, rank, vrank, size, total_recv = 0, err;
char *ptmp = NULL, *tempbuf = NULL;
ompi_coll_tree_t* bmtree;
MPI_Status status;
MPI_Aint sextent, slb, strue_lb, strue_extent;
MPI_Aint rextent, rlb, rtrue_lb, rtrue_extent;
mca_coll_tuned_module_t *tuned_module = (mca_coll_tuned_module_t*) module;
mca_coll_tuned_comm_t *data = tuned_module->tuned_data;
size = ompi_comm_size(comm);
rank = ompi_comm_rank(comm);
OPAL_OUTPUT((ompi_coll_tuned_stream,
"ompi_coll_tuned_gather_intra_binomial rank %d", rank));
/* create the binomial tree */
COLL_TUNED_UPDATE_IN_ORDER_BMTREE( comm, tuned_module, root );
bmtree = data->cached_in_order_bmtree;
- Split the datatype engine into two parts: an MPI specific part in OMPI and a language agnostic part in OPAL. The convertor is completely moved into OPAL. This offers several benefits as described in RFC http://www.open-mpi.org/community/lists/devel/2009/07/6387.php namely: - Fewer basic types (int* and float* types, boolean and wchar - Fixing naming scheme to ompi-nomenclature. - Usability outside of the ompi-layer. - Due to the fixed nature of simple opal types, their information is completely known at compile time and therefore constified - With fewer datatypes (22), the actual sizes of bit-field types may be reduced from 64 to 32 bits, allowing reorganizing the opal_datatype structure, eliminating holes and keeping data required in convertor (upon send/recv) in one cacheline... This has implications to the convertor-datastructure and other parts of the code. - Several performance tests have been run, the netpipe latency does not change with this patch on Linux/x86-64 on the smoky cluster. - Extensive tests have been done to verify correctness (no new regressions) using: 1. mpi_test_suite on linux/x86-64 using clean ompi-trunk and ompi-ddt: a. running both trunk and ompi-ddt resulted in no differences (except for MPI_SHORT_INT and MPI_TYPE_MIX_LB_UB do now run correctly). b. with --enable-memchecker and running under valgrind (one buglet when run with static found in test-suite, commited) 2. ibm testsuite on linux/x86-64 using clean ompi-trunk and ompi-ddt: all passed (except for the dynamic/ tests failed!! as trunk/MTT) 3. compilation and usage of HDF5 tests on Jaguar using PGI and PathScale compilers. 4. compilation and usage on Scicortex. - Please note, that for the heterogeneous case, (-m32 compiled binaries/ompi), neither ompi-trunk, nor ompi-ddt branch would successfully launch. This commit was SVN r21641.
2009-07-13 08:56:31 +04:00
ompi_datatype_get_extent(sdtype, &slb, &sextent);
ompi_datatype_get_true_extent(sdtype, &strue_lb, &strue_extent);
vrank = (rank - root + size) % size;
if (rank == root) {
ompi_datatype_get_extent(rdtype, &rlb, &rextent);
ompi_datatype_get_true_extent(rdtype, &rtrue_lb, &rtrue_extent);
if (0 == root){
/* root on 0, just use the recv buffer */
ptmp = (char *) rbuf;
if (sbuf != MPI_IN_PLACE) {
err = ompi_datatype_sndrcv(sbuf, scount, sdtype,
ptmp, rcount, rdtype);
if (MPI_SUCCESS != err) { line = __LINE__; goto err_hndl; }
}
} else {
/* root is not on 0, allocate temp buffer for recv,
* rotate data at the end */
tempbuf = (char *) malloc(rtrue_extent + ((ptrdiff_t)rcount * (ptrdiff_t)size - 1) * rextent);
if (NULL == tempbuf) {
err= OMPI_ERR_OUT_OF_RESOURCE; line = __LINE__; goto err_hndl;
}
ptmp = tempbuf - rtrue_lb;
if (sbuf != MPI_IN_PLACE) {
/* copy from sbuf to temp buffer */
err = ompi_datatype_sndrcv(sbuf, scount, sdtype,
ptmp, rcount, rdtype);
if (MPI_SUCCESS != err) { line = __LINE__; goto err_hndl; }
} else {
/* copy from rbuf to temp buffer */
err = ompi_datatype_copy_content_same_ddt(rdtype, rcount, ptmp,
(char *)rbuf + (ptrdiff_t)rank * rextent * (ptrdiff_t)rcount);
if (MPI_SUCCESS != err) { line = __LINE__; goto err_hndl; }
}
}
total_recv = rcount;
} else if (!(vrank % 2)) {
/* other non-leaf nodes, allocate temp buffer for data received from
* children, the most we need is half of the total data elements due
* to the property of binimoal tree */
tempbuf = (char *) malloc(strue_extent + ((ptrdiff_t)scount * (ptrdiff_t)size - 1) * sextent);
if (NULL == tempbuf) {
err= OMPI_ERR_OUT_OF_RESOURCE; line = __LINE__; goto err_hndl;
}
ptmp = tempbuf - strue_lb;
/* local copy to tempbuf */
err = ompi_datatype_sndrcv(sbuf, scount, sdtype,
ptmp, scount, sdtype);
if (MPI_SUCCESS != err) { line = __LINE__; goto err_hndl; }
/* use sdtype,scount as rdtype,rdcount since they are ignored on
* non-root procs */
rdtype = sdtype;
rcount = scount;
rextent = sextent;
total_recv = rcount;
} else {
/* leaf nodes, no temp buffer needed, use sdtype,scount as
* rdtype,rdcount since they are ignored on non-root procs */
ptmp = (char *) sbuf;
total_recv = scount;
}
if (!(vrank % 2)) {
/* all non-leaf nodes recv from children */
for (i = 0; i < bmtree->tree_nextsize; i++) {
int mycount = 0, vkid;
/* figure out how much data I have to send to this child */
vkid = (bmtree->tree_next[i] - root + size) % size;
mycount = vkid - vrank;
if (mycount > (size - vkid))
mycount = size - vkid;
mycount *= rcount;
OPAL_OUTPUT((ompi_coll_tuned_stream,
"ompi_coll_tuned_gather_intra_binomial rank %d recv %d mycount = %d",
rank, bmtree->tree_next[i], mycount));
err = MCA_PML_CALL(recv(ptmp + total_recv*rextent, (ptrdiff_t)rcount * size - total_recv, rdtype,
bmtree->tree_next[i], MCA_COLL_BASE_TAG_GATHER,
comm, &status));
if (MPI_SUCCESS != err) { line = __LINE__; goto err_hndl; }
total_recv += mycount;
}
}
if (rank != root) {
/* all nodes except root send to parents */
OPAL_OUTPUT((ompi_coll_tuned_stream,
"ompi_coll_tuned_gather_intra_binomial rank %d send %d count %d\n",
rank, bmtree->tree_prev, total_recv));
err = MCA_PML_CALL(send(ptmp, total_recv, sdtype,
bmtree->tree_prev,
MCA_COLL_BASE_TAG_GATHER,
MCA_PML_BASE_SEND_STANDARD, comm));
if (MPI_SUCCESS != err) { line = __LINE__; goto err_hndl; }
}
if (rank == root) {
if (root != 0) {
/* rotate received data on root if root != 0 */
err = ompi_datatype_copy_content_same_ddt(rdtype, (ptrdiff_t)rcount * (ptrdiff_t)(size - root),
(char *)rbuf + rextent * (ptrdiff_t)root * (ptrdiff_t)rcount, ptmp);
if (MPI_SUCCESS != err) { line = __LINE__; goto err_hndl; }
err = ompi_datatype_copy_content_same_ddt(rdtype, (ptrdiff_t)rcount * (ptrdiff_t)root,
(char *) rbuf, ptmp + rextent * (ptrdiff_t)rcount * (ptrdiff_t)(size-root));
if (MPI_SUCCESS != err) { line = __LINE__; goto err_hndl; }
free(tempbuf);
}
} else if (!(vrank % 2)) {
/* other non-leaf nodes */
free(tempbuf);
}
return MPI_SUCCESS;
err_hndl:
if (NULL != tempbuf)
free(tempbuf);
OPAL_OUTPUT((ompi_coll_tuned_stream, "%s:%4d\tError occurred %d, rank %2d",
__FILE__, line, err, rank));
return err;
}
/*
* gather_intra_linear_sync
*
* Function: - synchronized gather operation with
* Accepts: - same arguments as MPI_Gather(), first segment size
* Returns: - MPI_SUCCESS or error code
*/
int
ompi_coll_tuned_gather_intra_linear_sync(void *sbuf, int scount,
struct ompi_datatype_t *sdtype,
void *rbuf, int rcount,
struct ompi_datatype_t *rdtype,
int root,
struct ompi_communicator_t *comm,
mca_coll_base_module_t *module,
int first_segment_size)
{
int i, ret, line, rank, size, first_segment_count;
MPI_Aint extent, lb;
size_t typelng;
ompi_request_t **reqs = NULL;
size = ompi_comm_size(comm);
rank = ompi_comm_rank(comm);
OPAL_OUTPUT((ompi_coll_tuned_stream,
"ompi_coll_tuned_gather_intra_linear_sync rank %d, segment %d", rank, first_segment_size));
if (rank != root) {
/* Non-root processes:
- receive zero byte message from the root,
- send the first segment of the data synchronously,
- send the second segment of the data.
*/
- Split the datatype engine into two parts: an MPI specific part in OMPI and a language agnostic part in OPAL. The convertor is completely moved into OPAL. This offers several benefits as described in RFC http://www.open-mpi.org/community/lists/devel/2009/07/6387.php namely: - Fewer basic types (int* and float* types, boolean and wchar - Fixing naming scheme to ompi-nomenclature. - Usability outside of the ompi-layer. - Due to the fixed nature of simple opal types, their information is completely known at compile time and therefore constified - With fewer datatypes (22), the actual sizes of bit-field types may be reduced from 64 to 32 bits, allowing reorganizing the opal_datatype structure, eliminating holes and keeping data required in convertor (upon send/recv) in one cacheline... This has implications to the convertor-datastructure and other parts of the code. - Several performance tests have been run, the netpipe latency does not change with this patch on Linux/x86-64 on the smoky cluster. - Extensive tests have been done to verify correctness (no new regressions) using: 1. mpi_test_suite on linux/x86-64 using clean ompi-trunk and ompi-ddt: a. running both trunk and ompi-ddt resulted in no differences (except for MPI_SHORT_INT and MPI_TYPE_MIX_LB_UB do now run correctly). b. with --enable-memchecker and running under valgrind (one buglet when run with static found in test-suite, commited) 2. ibm testsuite on linux/x86-64 using clean ompi-trunk and ompi-ddt: all passed (except for the dynamic/ tests failed!! as trunk/MTT) 3. compilation and usage of HDF5 tests on Jaguar using PGI and PathScale compilers. 4. compilation and usage on Scicortex. - Please note, that for the heterogeneous case, (-m32 compiled binaries/ompi), neither ompi-trunk, nor ompi-ddt branch would successfully launch. This commit was SVN r21641.
2009-07-13 08:56:31 +04:00
ompi_datatype_type_size(sdtype, &typelng);
ompi_datatype_get_extent(sdtype, &lb, &extent);
first_segment_count = scount;
COLL_TUNED_COMPUTED_SEGCOUNT( (size_t) first_segment_size, typelng,
first_segment_count );
ret = MCA_PML_CALL(recv(sbuf, 0, MPI_BYTE, root,
MCA_COLL_BASE_TAG_GATHER,
comm, MPI_STATUS_IGNORE));
if (ret != MPI_SUCCESS) { line = __LINE__; goto error_hndl; }
ret = MCA_PML_CALL(send(sbuf, first_segment_count, sdtype, root,
MCA_COLL_BASE_TAG_GATHER,
MCA_PML_BASE_SEND_STANDARD, comm));
if (ret != MPI_SUCCESS) { line = __LINE__; goto error_hndl; }
ret = MCA_PML_CALL(send((char*)sbuf + extent * first_segment_count,
(scount - first_segment_count), sdtype,
root, MCA_COLL_BASE_TAG_GATHER,
MCA_PML_BASE_SEND_STANDARD, comm));
if (ret != MPI_SUCCESS) { line = __LINE__; goto error_hndl; }
} else {
/* Root process,
- For every non-root node:
- post irecv for the first segment of the message
- send zero byte message to signal node to send the message
- post irecv for the second segment of the message
- wait for the first segment to complete
- Copy local data if necessary
- Waitall for all the second segments to complete.
*/
char *ptmp;
ompi_request_t *first_segment_req;
reqs = (ompi_request_t**) calloc(size, sizeof(ompi_request_t*));
if (NULL == reqs) { ret = -1; line = __LINE__; goto error_hndl; }
- Split the datatype engine into two parts: an MPI specific part in OMPI and a language agnostic part in OPAL. The convertor is completely moved into OPAL. This offers several benefits as described in RFC http://www.open-mpi.org/community/lists/devel/2009/07/6387.php namely: - Fewer basic types (int* and float* types, boolean and wchar - Fixing naming scheme to ompi-nomenclature. - Usability outside of the ompi-layer. - Due to the fixed nature of simple opal types, their information is completely known at compile time and therefore constified - With fewer datatypes (22), the actual sizes of bit-field types may be reduced from 64 to 32 bits, allowing reorganizing the opal_datatype structure, eliminating holes and keeping data required in convertor (upon send/recv) in one cacheline... This has implications to the convertor-datastructure and other parts of the code. - Several performance tests have been run, the netpipe latency does not change with this patch on Linux/x86-64 on the smoky cluster. - Extensive tests have been done to verify correctness (no new regressions) using: 1. mpi_test_suite on linux/x86-64 using clean ompi-trunk and ompi-ddt: a. running both trunk and ompi-ddt resulted in no differences (except for MPI_SHORT_INT and MPI_TYPE_MIX_LB_UB do now run correctly). b. with --enable-memchecker and running under valgrind (one buglet when run with static found in test-suite, commited) 2. ibm testsuite on linux/x86-64 using clean ompi-trunk and ompi-ddt: all passed (except for the dynamic/ tests failed!! as trunk/MTT) 3. compilation and usage of HDF5 tests on Jaguar using PGI and PathScale compilers. 4. compilation and usage on Scicortex. - Please note, that for the heterogeneous case, (-m32 compiled binaries/ompi), neither ompi-trunk, nor ompi-ddt branch would successfully launch. This commit was SVN r21641.
2009-07-13 08:56:31 +04:00
ompi_datatype_type_size(rdtype, &typelng);
ompi_datatype_get_extent(rdtype, &lb, &extent);
first_segment_count = rcount;
COLL_TUNED_COMPUTED_SEGCOUNT( (size_t)first_segment_size, typelng,
first_segment_count );
ptmp = (char *) rbuf;
for (i = 0; i < size; ++i) {
if (i == rank) {
/* skip myself */
reqs[i] = MPI_REQUEST_NULL;
continue;
}
/* irecv for the first segment from i */
ptmp = (char*)rbuf + (ptrdiff_t)i * (ptrdiff_t)rcount * extent;
ret = MCA_PML_CALL(irecv(ptmp, first_segment_count, rdtype, i,
MCA_COLL_BASE_TAG_GATHER, comm,
&first_segment_req));
if (ret != MPI_SUCCESS) { line = __LINE__; goto error_hndl; }
/* send sync message */
ret = MCA_PML_CALL(send(rbuf, 0, MPI_BYTE, i,
MCA_COLL_BASE_TAG_GATHER,
MCA_PML_BASE_SEND_STANDARD, comm));
if (ret != MPI_SUCCESS) { line = __LINE__; goto error_hndl; }
/* irecv for the second segment */
ptmp = (char*)rbuf + ((ptrdiff_t)i * (ptrdiff_t)rcount + first_segment_count) * extent;
ret = MCA_PML_CALL(irecv(ptmp, (rcount - first_segment_count),
rdtype, i, MCA_COLL_BASE_TAG_GATHER, comm,
&reqs[i]));
if (ret != MPI_SUCCESS) { line = __LINE__; goto error_hndl; }
/* wait on the first segment to complete */
ret = ompi_request_wait(&first_segment_req, MPI_STATUS_IGNORE);
if (ret != MPI_SUCCESS) { line = __LINE__; goto error_hndl; }
}
/* copy local data if necessary */
if (MPI_IN_PLACE != sbuf) {
- Split the datatype engine into two parts: an MPI specific part in OMPI and a language agnostic part in OPAL. The convertor is completely moved into OPAL. This offers several benefits as described in RFC http://www.open-mpi.org/community/lists/devel/2009/07/6387.php namely: - Fewer basic types (int* and float* types, boolean and wchar - Fixing naming scheme to ompi-nomenclature. - Usability outside of the ompi-layer. - Due to the fixed nature of simple opal types, their information is completely known at compile time and therefore constified - With fewer datatypes (22), the actual sizes of bit-field types may be reduced from 64 to 32 bits, allowing reorganizing the opal_datatype structure, eliminating holes and keeping data required in convertor (upon send/recv) in one cacheline... This has implications to the convertor-datastructure and other parts of the code. - Several performance tests have been run, the netpipe latency does not change with this patch on Linux/x86-64 on the smoky cluster. - Extensive tests have been done to verify correctness (no new regressions) using: 1. mpi_test_suite on linux/x86-64 using clean ompi-trunk and ompi-ddt: a. running both trunk and ompi-ddt resulted in no differences (except for MPI_SHORT_INT and MPI_TYPE_MIX_LB_UB do now run correctly). b. with --enable-memchecker and running under valgrind (one buglet when run with static found in test-suite, commited) 2. ibm testsuite on linux/x86-64 using clean ompi-trunk and ompi-ddt: all passed (except for the dynamic/ tests failed!! as trunk/MTT) 3. compilation and usage of HDF5 tests on Jaguar using PGI and PathScale compilers. 4. compilation and usage on Scicortex. - Please note, that for the heterogeneous case, (-m32 compiled binaries/ompi), neither ompi-trunk, nor ompi-ddt branch would successfully launch. This commit was SVN r21641.
2009-07-13 08:56:31 +04:00
ret = ompi_datatype_sndrcv(sbuf, scount, sdtype,
(char*)rbuf + (ptrdiff_t)rank * (ptrdiff_t)rcount * extent,
rcount, rdtype);
if (ret != MPI_SUCCESS) { line = __LINE__; goto error_hndl; }
}
/* wait all second segments to complete */
ret = ompi_request_wait_all(size, reqs, MPI_STATUSES_IGNORE);
if (ret != MPI_SUCCESS) { line = __LINE__; goto error_hndl; }
free(reqs);
}
/* All done */
return MPI_SUCCESS;
error_hndl:
if (NULL != reqs) {
free(reqs);
}
OPAL_OUTPUT (( ompi_coll_tuned_stream,
"ERROR_HNDL: node %d file %s line %d error %d\n",
rank, __FILE__, line, ret ));
return ret;
}
/*
* Linear functions are copied from the BASIC coll module
* they do not segment the message and are simple implementations
* but for some small number of nodes and/or small data sizes they
* are just as fast as tuned/tree based segmenting operations
* and as such may be selected by the decision functions
* These are copied into this module due to the way we select modules
* in V1. i.e. in V2 we will handle this differently and so will not
* have to duplicate code.
* JPG following the examples from other coll_tuned implementations. Dec06.
*/
/* copied function (with appropriate renaming) starts here */
/*
* gather_intra
*
* Function: - basic gather operation
* Accepts: - same arguments as MPI_Gather()
* Returns: - MPI_SUCCESS or error code
*/
int
ompi_coll_tuned_gather_intra_basic_linear(void *sbuf, int scount,
struct ompi_datatype_t *sdtype,
void *rbuf, int rcount,
struct ompi_datatype_t *rdtype,
int root,
struct ompi_communicator_t *comm,
mca_coll_base_module_t *module)
{
int i, err, rank, size;
char *ptmp;
MPI_Aint incr, extent, lb;
size = ompi_comm_size(comm);
rank = ompi_comm_rank(comm);
/* Everyone but root sends data and returns. */
OPAL_OUTPUT((ompi_coll_tuned_stream,
"ompi_coll_tuned_gather_intra_basic_linear rank %d", rank));
if (rank != root) {
return MCA_PML_CALL(send(sbuf, scount, sdtype, root,
MCA_COLL_BASE_TAG_GATHER,
MCA_PML_BASE_SEND_STANDARD, comm));
}
/* I am the root, loop receiving the data. */
- Split the datatype engine into two parts: an MPI specific part in OMPI and a language agnostic part in OPAL. The convertor is completely moved into OPAL. This offers several benefits as described in RFC http://www.open-mpi.org/community/lists/devel/2009/07/6387.php namely: - Fewer basic types (int* and float* types, boolean and wchar - Fixing naming scheme to ompi-nomenclature. - Usability outside of the ompi-layer. - Due to the fixed nature of simple opal types, their information is completely known at compile time and therefore constified - With fewer datatypes (22), the actual sizes of bit-field types may be reduced from 64 to 32 bits, allowing reorganizing the opal_datatype structure, eliminating holes and keeping data required in convertor (upon send/recv) in one cacheline... This has implications to the convertor-datastructure and other parts of the code. - Several performance tests have been run, the netpipe latency does not change with this patch on Linux/x86-64 on the smoky cluster. - Extensive tests have been done to verify correctness (no new regressions) using: 1. mpi_test_suite on linux/x86-64 using clean ompi-trunk and ompi-ddt: a. running both trunk and ompi-ddt resulted in no differences (except for MPI_SHORT_INT and MPI_TYPE_MIX_LB_UB do now run correctly). b. with --enable-memchecker and running under valgrind (one buglet when run with static found in test-suite, commited) 2. ibm testsuite on linux/x86-64 using clean ompi-trunk and ompi-ddt: all passed (except for the dynamic/ tests failed!! as trunk/MTT) 3. compilation and usage of HDF5 tests on Jaguar using PGI and PathScale compilers. 4. compilation and usage on Scicortex. - Please note, that for the heterogeneous case, (-m32 compiled binaries/ompi), neither ompi-trunk, nor ompi-ddt branch would successfully launch. This commit was SVN r21641.
2009-07-13 08:56:31 +04:00
ompi_datatype_get_extent(rdtype, &lb, &extent);
incr = extent * (ptrdiff_t)rcount;
for (i = 0, ptmp = (char *) rbuf; i < size; ++i, ptmp += incr) {
if (i == rank) {
if (MPI_IN_PLACE != sbuf) {
- Split the datatype engine into two parts: an MPI specific part in OMPI and a language agnostic part in OPAL. The convertor is completely moved into OPAL. This offers several benefits as described in RFC http://www.open-mpi.org/community/lists/devel/2009/07/6387.php namely: - Fewer basic types (int* and float* types, boolean and wchar - Fixing naming scheme to ompi-nomenclature. - Usability outside of the ompi-layer. - Due to the fixed nature of simple opal types, their information is completely known at compile time and therefore constified - With fewer datatypes (22), the actual sizes of bit-field types may be reduced from 64 to 32 bits, allowing reorganizing the opal_datatype structure, eliminating holes and keeping data required in convertor (upon send/recv) in one cacheline... This has implications to the convertor-datastructure and other parts of the code. - Several performance tests have been run, the netpipe latency does not change with this patch on Linux/x86-64 on the smoky cluster. - Extensive tests have been done to verify correctness (no new regressions) using: 1. mpi_test_suite on linux/x86-64 using clean ompi-trunk and ompi-ddt: a. running both trunk and ompi-ddt resulted in no differences (except for MPI_SHORT_INT and MPI_TYPE_MIX_LB_UB do now run correctly). b. with --enable-memchecker and running under valgrind (one buglet when run with static found in test-suite, commited) 2. ibm testsuite on linux/x86-64 using clean ompi-trunk and ompi-ddt: all passed (except for the dynamic/ tests failed!! as trunk/MTT) 3. compilation and usage of HDF5 tests on Jaguar using PGI and PathScale compilers. 4. compilation and usage on Scicortex. - Please note, that for the heterogeneous case, (-m32 compiled binaries/ompi), neither ompi-trunk, nor ompi-ddt branch would successfully launch. This commit was SVN r21641.
2009-07-13 08:56:31 +04:00
err = ompi_datatype_sndrcv(sbuf, scount, sdtype,
ptmp, rcount, rdtype);
} else {
err = MPI_SUCCESS;
}
} else {
err = MCA_PML_CALL(recv(ptmp, rcount, rdtype, i,
MCA_COLL_BASE_TAG_GATHER,
comm, MPI_STATUS_IGNORE));
}
if (MPI_SUCCESS != err) {
return err;
}
}
/* All done */
return MPI_SUCCESS;
}
/* copied function (with appropriate renaming) ends here */
/* The following are used by dynamic and forced rules */
/* publish details of each algorithm and if its forced/fixed/locked in */
/* as you add methods/algorithms you must update this and the query/map
routines */
/* this routine is called by the component only */
/* this makes sure that the mca parameters are set to their initial values
and perms */
/* module does not call this they call the forced_getvalues routine instead */
int
ompi_coll_tuned_gather_intra_check_forced_init(coll_tuned_force_algorithm_mca_param_indices_t *mca_param_indices)
{
MCA/base: Add new MCA variable system Features: - Support for an override parameter file (openmpi-mca-param-override.conf). Variable values in this file can not be overridden by any file or environment value. - Support for boolean, unsigned, and unsigned long long variables. - Support for true/false values. - Support for enumerations on integer variables. - Support for MPIT scope, verbosity, and binding. - Support for command line source. - Support for setting variable source via the environment using OMPI_MCA_SOURCE_<var name>=source (either command or file:filename) - Cleaner API. - Support for variable groups (equivalent to MPIT categories). Notes: - Variables must be created with a backing store (char **, int *, or bool *) that must live at least as long as the variable. - Creating a variable with the MCA_BASE_VAR_FLAG_SETTABLE enables the use of mca_base_var_set_value() to change the value. - String values are duplicated when the variable is registered. It is up to the caller to free the original value if necessary. The new value will be freed by the mca_base_var system and must not be freed by the user. - Variables with constant scope may not be settable. - Variable groups (and all associated variables) are deregistered when the component is closed or the component repository item is freed. This prevents a segmentation fault from accessing a variable after its component is unloaded. - After some discussion we decided we should remove the automatic registration of component priority variables. Few component actually made use of this feature. - The enumerator interface was updated to be general enough to handle future uses of the interface. - The code to generate ompi_info output has been moved into the MCA variable system. See mca_base_var_dump(). opal: update core and components to mca_base_var system orte: update core and components to mca_base_var system ompi: update core and components to mca_base_var system This commit also modifies the rmaps framework. The following variables were moved from ppr and lama: rmaps_base_pernode, rmaps_base_n_pernode, rmaps_base_n_persocket. Both lama and ppr create synonyms for these variables. This commit was SVN r28236.
2013-03-28 01:09:41 +04:00
mca_base_var_enum_t *new_enum;
ompi_coll_tuned_forced_max_algorithms[GATHER] = coll_tuned_gather_algorithm_count;
(void) mca_base_component_var_register(&mca_coll_tuned_component.super.collm_version,
"gather_algorithm_count",
"Number of gather algorithms available",
MCA_BASE_VAR_TYPE_INT, NULL, 0,
MCA_BASE_VAR_FLAG_DEFAULT_ONLY,
OPAL_INFO_LVL_5,
MCA_BASE_VAR_SCOPE_CONSTANT,
&coll_tuned_gather_algorithm_count);
/* MPI_T: This variable should eventually be bound to a communicator */
coll_tuned_gather_forced_algorithm = 0;
(void) mca_base_var_enum_create("coll_tuned_gather_algorithms", gather_algorithms, &new_enum);
mca_param_indices->algorithm_param_index =
mca_base_component_var_register(&mca_coll_tuned_component.super.collm_version,
"gather_algorithm",
"Which gather algorithm is used. Can be locked down to choice of: 0 ignore, 1 basic linear, 2 binomial, 3 linear with synchronization.",
MCA_BASE_VAR_TYPE_INT, new_enum, 0, 0,
OPAL_INFO_LVL_5,
MCA_BASE_VAR_SCOPE_READONLY,
&coll_tuned_gather_forced_algorithm);
OBJ_RELEASE(new_enum);
if (mca_param_indices->algorithm_param_index < 0) {
return mca_param_indices->algorithm_param_index;
}
MCA/base: Add new MCA variable system Features: - Support for an override parameter file (openmpi-mca-param-override.conf). Variable values in this file can not be overridden by any file or environment value. - Support for boolean, unsigned, and unsigned long long variables. - Support for true/false values. - Support for enumerations on integer variables. - Support for MPIT scope, verbosity, and binding. - Support for command line source. - Support for setting variable source via the environment using OMPI_MCA_SOURCE_<var name>=source (either command or file:filename) - Cleaner API. - Support for variable groups (equivalent to MPIT categories). Notes: - Variables must be created with a backing store (char **, int *, or bool *) that must live at least as long as the variable. - Creating a variable with the MCA_BASE_VAR_FLAG_SETTABLE enables the use of mca_base_var_set_value() to change the value. - String values are duplicated when the variable is registered. It is up to the caller to free the original value if necessary. The new value will be freed by the mca_base_var system and must not be freed by the user. - Variables with constant scope may not be settable. - Variable groups (and all associated variables) are deregistered when the component is closed or the component repository item is freed. This prevents a segmentation fault from accessing a variable after its component is unloaded. - After some discussion we decided we should remove the automatic registration of component priority variables. Few component actually made use of this feature. - The enumerator interface was updated to be general enough to handle future uses of the interface. - The code to generate ompi_info output has been moved into the MCA variable system. See mca_base_var_dump(). opal: update core and components to mca_base_var system orte: update core and components to mca_base_var system ompi: update core and components to mca_base_var system This commit also modifies the rmaps framework. The following variables were moved from ppr and lama: rmaps_base_pernode, rmaps_base_n_pernode, rmaps_base_n_persocket. Both lama and ppr create synonyms for these variables. This commit was SVN r28236.
2013-03-28 01:09:41 +04:00
coll_tuned_gather_segment_size = 0;
mca_param_indices->segsize_param_index =
mca_base_component_var_register(&mca_coll_tuned_component.super.collm_version,
"gather_algorithm_segmentsize",
"Segment size in bytes used by default for gather algorithms. Only has meaning if algorithm is forced and supports segmenting. 0 bytes means no segmentation. Currently, available algorithms do not support segmentation.",
MCA_BASE_VAR_TYPE_INT, NULL, 0, 0,
OPAL_INFO_LVL_5,
MCA_BASE_VAR_SCOPE_READONLY,
&coll_tuned_gather_segment_size);
coll_tuned_gather_tree_fanout = ompi_coll_tuned_init_tree_fanout; /* get system wide default */
mca_param_indices->tree_fanout_param_index =
mca_base_component_var_register(&mca_coll_tuned_component.super.collm_version,
"gather_algorithm_tree_fanout",
"Fanout for n-tree used for gather algorithms. Only has meaning if algorithm is forced and supports n-tree topo based operation. Currently, available algorithms do not support n-tree topologies.",
MCA_BASE_VAR_TYPE_INT, NULL, 0, 0,
OPAL_INFO_LVL_5,
MCA_BASE_VAR_SCOPE_READONLY,
&coll_tuned_gather_tree_fanout);
coll_tuned_gather_chain_fanout = ompi_coll_tuned_init_chain_fanout; /* get system wide default */
mca_param_indices->chain_fanout_param_index =
mca_base_component_var_register(&mca_coll_tuned_component.super.collm_version,
"gather_algorithm_chain_fanout",
"Fanout for chains used for gather algorithms. Only has meaning if algorithm is forced and supports chain topo based operation. Currently, available algorithms do not support chain topologies.",
MCA_BASE_VAR_TYPE_INT, NULL, 0, 0,
OPAL_INFO_LVL_5,
MCA_BASE_VAR_SCOPE_READONLY,
&coll_tuned_gather_chain_fanout);
return (MPI_SUCCESS);
}
int
ompi_coll_tuned_gather_intra_do_forced(void *sbuf, int scount,
struct ompi_datatype_t *sdtype,
void* rbuf, int rcount,
struct ompi_datatype_t *rdtype,
int root,
struct ompi_communicator_t *comm,
mca_coll_base_module_t *module)
{
mca_coll_tuned_module_t *tuned_module = (mca_coll_tuned_module_t*) module;
mca_coll_tuned_comm_t *data = tuned_module->tuned_data;
OPAL_OUTPUT((ompi_coll_tuned_stream,
"coll:tuned:gather_intra_do_forced selected algorithm %d",
data->user_forced[GATHER].algorithm));
switch (data->user_forced[GATHER].algorithm) {
case (0):
return ompi_coll_tuned_gather_intra_dec_fixed (sbuf, scount, sdtype,
rbuf, rcount, rdtype,
root, comm, module);
case (1):
return ompi_coll_tuned_gather_intra_basic_linear (sbuf, scount, sdtype,
rbuf, rcount, rdtype,
root, comm, module);
case (2):
return ompi_coll_tuned_gather_intra_binomial(sbuf, scount, sdtype,
rbuf, rcount, rdtype,
root, comm, module);
case (3):
return ompi_coll_tuned_gather_intra_linear_sync (sbuf, scount, sdtype,
rbuf, rcount, rdtype,
root, comm, module,
data->user_forced[GATHER].segsize);
default:
OPAL_OUTPUT((ompi_coll_tuned_stream,
"coll:tuned:gather_intra_do_forced attempt to select algorithm %d when only 0-%d is valid?",
data->user_forced[GATHER].algorithm,
ompi_coll_tuned_forced_max_algorithms[GATHER]));
return (MPI_ERR_ARG);
} /* switch */
}
int
ompi_coll_tuned_gather_intra_do_this(void *sbuf, int scount,
struct ompi_datatype_t *sdtype,
void* rbuf, int rcount,
struct ompi_datatype_t *rdtype,
int root,
struct ompi_communicator_t *comm,
mca_coll_base_module_t *module,
int algorithm, int faninout, int segsize)
{
OPAL_OUTPUT((ompi_coll_tuned_stream,
"coll:tuned:gather_intra_do_this selected algorithm %d topo faninout %d segsize %d",
algorithm, faninout, segsize));
switch (algorithm) {
case (0):
return ompi_coll_tuned_gather_intra_dec_fixed (sbuf, scount, sdtype,
rbuf, rcount, rdtype,
root, comm, module);
case (1):
return ompi_coll_tuned_gather_intra_basic_linear (sbuf, scount, sdtype,
rbuf, rcount, rdtype,
root, comm, module);
case (2):
return ompi_coll_tuned_gather_intra_binomial(sbuf, scount, sdtype,
rbuf, rcount, rdtype,
root, comm, module);
case (3):
return ompi_coll_tuned_gather_intra_linear_sync (sbuf, scount, sdtype,
rbuf, rcount, rdtype,
root, comm, module,
segsize);
default:
OPAL_OUTPUT((ompi_coll_tuned_stream,
"coll:tuned:gather_intra_do_this attempt to select algorithm %d when only 0-%d is valid?",
algorithm,
ompi_coll_tuned_forced_max_algorithms[GATHER]));
return (MPI_ERR_ARG);
} /* switch */
}