2004-01-12 00:26:55 +03:00
|
|
|
/*
|
2005-11-05 22:57:48 +03:00
|
|
|
* Copyright (c) 2004-2005 The Trustees of Indiana University and Indiana
|
|
|
|
* University Research and Technology
|
|
|
|
* Corporation. All rights reserved.
|
2006-08-24 20:38:08 +04:00
|
|
|
* Copyright (c) 2004-2006 The University of Tennessee and The University
|
2005-11-05 22:57:48 +03:00
|
|
|
* of Tennessee Research Foundation. All rights
|
|
|
|
* reserved.
|
2004-11-28 23:09:25 +03:00
|
|
|
* Copyright (c) 2004-2005 High Performance Computing Center Stuttgart,
|
|
|
|
* University of Stuttgart. All rights reserved.
|
2005-03-24 15:43:37 +03:00
|
|
|
* Copyright (c) 2004-2005 The Regents of the University of California.
|
|
|
|
* All rights reserved.
|
2004-11-22 04:38:40 +03:00
|
|
|
* $COPYRIGHT$
|
|
|
|
*
|
|
|
|
* Additional copyrights may follow
|
|
|
|
*
|
2004-01-12 00:26:55 +03:00
|
|
|
* $HEADER$
|
|
|
|
*/
|
|
|
|
|
2004-06-07 19:33:53 +04:00
|
|
|
#include "ompi_config.h"
|
2004-02-15 00:26:30 +03:00
|
|
|
#include "coll_basic.h"
|
2004-01-12 00:26:55 +03:00
|
|
|
|
2005-09-15 19:15:23 +04:00
|
|
|
#include <stdlib.h>
|
|
|
|
|
2004-01-12 00:26:55 +03:00
|
|
|
#include "mpi.h"
|
2006-02-12 04:33:29 +03:00
|
|
|
#include "ompi/constants.h"
|
- Split the datatype engine into two parts: an MPI specific part in
OMPI
and a language agnostic part in OPAL. The convertor is completely
moved into OPAL. This offers several benefits as described in RFC
http://www.open-mpi.org/community/lists/devel/2009/07/6387.php
namely:
- Fewer basic types (int* and float* types, boolean and wchar
- Fixing naming scheme to ompi-nomenclature.
- Usability outside of the ompi-layer.
- Due to the fixed nature of simple opal types, their information is
completely
known at compile time and therefore constified
- With fewer datatypes (22), the actual sizes of bit-field types may be
reduced
from 64 to 32 bits, allowing reorganizing the opal_datatype
structure, eliminating holes and keeping data required in convertor
(upon send/recv) in one cacheline...
This has implications to the convertor-datastructure and other parts
of the code.
- Several performance tests have been run, the netpipe latency does not
change with
this patch on Linux/x86-64 on the smoky cluster.
- Extensive tests have been done to verify correctness (no new
regressions) using:
1. mpi_test_suite on linux/x86-64 using clean ompi-trunk and
ompi-ddt:
a. running both trunk and ompi-ddt resulted in no differences
(except for MPI_SHORT_INT and MPI_TYPE_MIX_LB_UB do now run
correctly).
b. with --enable-memchecker and running under valgrind (one buglet
when run with static found in test-suite, commited)
2. ibm testsuite on linux/x86-64 using clean ompi-trunk and ompi-ddt:
all passed (except for the dynamic/ tests failed!! as trunk/MTT)
3. compilation and usage of HDF5 tests on Jaguar using PGI and
PathScale compilers.
4. compilation and usage on Scicortex.
- Please note, that for the heterogeneous case, (-m32 compiled
binaries/ompi), neither
ompi-trunk, nor ompi-ddt branch would successfully launch.
This commit was SVN r21641.
2009-07-13 08:56:31 +04:00
|
|
|
#include "ompi/datatype/ompi_datatype.h"
|
2005-09-13 00:21:53 +04:00
|
|
|
#include "ompi/mca/coll/coll.h"
|
|
|
|
#include "ompi/mca/pml/pml.h"
|
|
|
|
#include "ompi/mca/coll/base/coll_tags.h"
|
2004-01-12 00:26:55 +03:00
|
|
|
#include "coll_basic.h"
|
|
|
|
|
|
|
|
|
|
|
|
/*
|
2004-06-29 04:02:25 +04:00
|
|
|
* allgather_intra
|
2004-01-12 00:26:55 +03:00
|
|
|
*
|
|
|
|
* Function: - allgather using other MPI collections
|
|
|
|
* Accepts: - same as MPI_Allgather()
|
|
|
|
* Returns: - MPI_SUCCESS or error code
|
|
|
|
*/
|
2005-08-10 14:51:42 +04:00
|
|
|
int
|
|
|
|
mca_coll_basic_allgather_intra(void *sbuf, int scount,
|
2005-08-10 21:53:43 +04:00
|
|
|
struct ompi_datatype_t *sdtype, void *rbuf,
|
|
|
|
int rcount, struct ompi_datatype_t *rdtype,
|
2007-08-19 07:37:49 +04:00
|
|
|
struct ompi_communicator_t *comm,
|
2008-07-29 02:40:57 +04:00
|
|
|
mca_coll_base_module_t *module)
|
2004-01-12 00:26:55 +03:00
|
|
|
{
|
2005-08-10 14:51:42 +04:00
|
|
|
int err;
|
2007-02-23 21:55:41 +03:00
|
|
|
ptrdiff_t lb, extent;
|
2005-08-10 14:51:42 +04:00
|
|
|
|
2005-09-14 00:06:54 +04:00
|
|
|
/* Handle MPI_IN_PLACE (see explanantion in reduce.c for how to
|
2005-09-15 19:15:23 +04:00
|
|
|
allocate temp buffer) -- note that rank 0 can use IN_PLACE
|
2007-02-21 23:39:56 +03:00
|
|
|
natively, and we can just alias the right position in rbuf
|
|
|
|
as sbuf and avoid using a temporary buffer if gather is
|
|
|
|
implemented correctly */
|
2005-09-15 19:15:23 +04:00
|
|
|
if (MPI_IN_PLACE == sbuf && 0 != ompi_comm_rank(comm)) {
|
- Split the datatype engine into two parts: an MPI specific part in
OMPI
and a language agnostic part in OPAL. The convertor is completely
moved into OPAL. This offers several benefits as described in RFC
http://www.open-mpi.org/community/lists/devel/2009/07/6387.php
namely:
- Fewer basic types (int* and float* types, boolean and wchar
- Fixing naming scheme to ompi-nomenclature.
- Usability outside of the ompi-layer.
- Due to the fixed nature of simple opal types, their information is
completely
known at compile time and therefore constified
- With fewer datatypes (22), the actual sizes of bit-field types may be
reduced
from 64 to 32 bits, allowing reorganizing the opal_datatype
structure, eliminating holes and keeping data required in convertor
(upon send/recv) in one cacheline...
This has implications to the convertor-datastructure and other parts
of the code.
- Several performance tests have been run, the netpipe latency does not
change with
this patch on Linux/x86-64 on the smoky cluster.
- Extensive tests have been done to verify correctness (no new
regressions) using:
1. mpi_test_suite on linux/x86-64 using clean ompi-trunk and
ompi-ddt:
a. running both trunk and ompi-ddt resulted in no differences
(except for MPI_SHORT_INT and MPI_TYPE_MIX_LB_UB do now run
correctly).
b. with --enable-memchecker and running under valgrind (one buglet
when run with static found in test-suite, commited)
2. ibm testsuite on linux/x86-64 using clean ompi-trunk and ompi-ddt:
all passed (except for the dynamic/ tests failed!! as trunk/MTT)
3. compilation and usage of HDF5 tests on Jaguar using PGI and
PathScale compilers.
4. compilation and usage on Scicortex.
- Please note, that for the heterogeneous case, (-m32 compiled
binaries/ompi), neither
ompi-trunk, nor ompi-ddt branch would successfully launch.
This commit was SVN r21641.
2009-07-13 08:56:31 +04:00
|
|
|
ompi_datatype_get_extent(rdtype, &lb, &extent);
|
2007-02-21 23:39:56 +03:00
|
|
|
sbuf = ((char*) rbuf) + (ompi_comm_rank(comm) * extent * rcount);
|
|
|
|
sdtype = rdtype;
|
|
|
|
scount = rcount;
|
2005-09-16 02:06:36 +04:00
|
|
|
}
|
2005-09-14 00:06:54 +04:00
|
|
|
|
|
|
|
/* Gather and broadcast. */
|
2004-01-12 00:26:55 +03:00
|
|
|
|
2005-08-10 14:51:42 +04:00
|
|
|
err = comm->c_coll.coll_gather(sbuf, scount, sdtype, rbuf, rcount,
|
2007-10-04 20:29:24 +04:00
|
|
|
rdtype, 0, comm, comm->c_coll.coll_gather_module);
|
2005-09-16 02:06:36 +04:00
|
|
|
if (MPI_SUCCESS == err) {
|
|
|
|
err = comm->c_coll.coll_bcast(rbuf, rcount * ompi_comm_size(comm),
|
2007-10-04 20:29:24 +04:00
|
|
|
rdtype, 0, comm, comm->c_coll.coll_bcast_module);
|
2005-09-14 00:06:54 +04:00
|
|
|
}
|
|
|
|
|
|
|
|
/* All done */
|
|
|
|
|
2005-09-16 02:06:36 +04:00
|
|
|
return err;
|
2004-01-12 00:26:55 +03:00
|
|
|
}
|
2004-06-29 04:02:25 +04:00
|
|
|
|
|
|
|
|
|
|
|
/*
|
|
|
|
* allgather_inter
|
|
|
|
*
|
|
|
|
* Function: - allgather using other MPI collections
|
|
|
|
* Accepts: - same as MPI_Allgather()
|
|
|
|
* Returns: - MPI_SUCCESS or error code
|
|
|
|
*/
|
2005-08-10 14:51:42 +04:00
|
|
|
int
|
|
|
|
mca_coll_basic_allgather_inter(void *sbuf, int scount,
|
2005-08-10 21:53:43 +04:00
|
|
|
struct ompi_datatype_t *sdtype,
|
|
|
|
void *rbuf, int rcount,
|
|
|
|
struct ompi_datatype_t *rdtype,
|
2007-08-19 07:37:49 +04:00
|
|
|
struct ompi_communicator_t *comm,
|
2008-07-29 02:40:57 +04:00
|
|
|
mca_coll_base_module_t *module)
|
2004-06-29 04:02:25 +04:00
|
|
|
{
|
2006-11-08 19:54:03 +03:00
|
|
|
int rank, root = 0, size, rsize, err, i;
|
2005-08-10 14:51:42 +04:00
|
|
|
char *tmpbuf = NULL, *ptmp;
|
2006-11-08 19:54:03 +03:00
|
|
|
ptrdiff_t rlb, slb, rextent, sextent, incr;
|
2004-08-04 02:12:57 +04:00
|
|
|
ompi_request_t *req;
|
2007-08-19 07:37:49 +04:00
|
|
|
mca_coll_basic_module_t *basic_module = (mca_coll_basic_module_t*) module;
|
|
|
|
ompi_request_t **reqs = basic_module->mccb_reqs;
|
2004-06-29 04:02:25 +04:00
|
|
|
|
2005-08-10 14:51:42 +04:00
|
|
|
rank = ompi_comm_rank(comm);
|
|
|
|
size = ompi_comm_size(comm);
|
|
|
|
rsize = ompi_comm_remote_size(comm);
|
|
|
|
|
2004-08-04 02:12:57 +04:00
|
|
|
/* Algorithm:
|
2005-08-10 14:51:42 +04:00
|
|
|
* - a gather to the root in remote group (simultaniously executed,
|
|
|
|
* thats why we cannot use coll_gather).
|
|
|
|
* - exchange the temp-results between two roots
|
|
|
|
* - inter-bcast (again simultanious).
|
|
|
|
*/
|
2004-08-04 02:12:57 +04:00
|
|
|
|
|
|
|
/* Step one: gather operations: */
|
2005-08-10 14:51:42 +04:00
|
|
|
if (rank != root) {
|
2005-08-10 21:53:43 +04:00
|
|
|
/* send your data to root */
|
|
|
|
err = MCA_PML_CALL(send(sbuf, scount, sdtype, root,
|
|
|
|
MCA_COLL_BASE_TAG_ALLGATHER,
|
|
|
|
MCA_PML_BASE_SEND_STANDARD, comm));
|
|
|
|
if (OMPI_SUCCESS != err) {
|
|
|
|
return err;
|
|
|
|
}
|
2005-08-10 14:51:42 +04:00
|
|
|
} else {
|
2005-08-10 21:53:43 +04:00
|
|
|
/* receive a msg. from all other procs. */
|
- Split the datatype engine into two parts: an MPI specific part in
OMPI
and a language agnostic part in OPAL. The convertor is completely
moved into OPAL. This offers several benefits as described in RFC
http://www.open-mpi.org/community/lists/devel/2009/07/6387.php
namely:
- Fewer basic types (int* and float* types, boolean and wchar
- Fixing naming scheme to ompi-nomenclature.
- Usability outside of the ompi-layer.
- Due to the fixed nature of simple opal types, their information is
completely
known at compile time and therefore constified
- With fewer datatypes (22), the actual sizes of bit-field types may be
reduced
from 64 to 32 bits, allowing reorganizing the opal_datatype
structure, eliminating holes and keeping data required in convertor
(upon send/recv) in one cacheline...
This has implications to the convertor-datastructure and other parts
of the code.
- Several performance tests have been run, the netpipe latency does not
change with
this patch on Linux/x86-64 on the smoky cluster.
- Extensive tests have been done to verify correctness (no new
regressions) using:
1. mpi_test_suite on linux/x86-64 using clean ompi-trunk and
ompi-ddt:
a. running both trunk and ompi-ddt resulted in no differences
(except for MPI_SHORT_INT and MPI_TYPE_MIX_LB_UB do now run
correctly).
b. with --enable-memchecker and running under valgrind (one buglet
when run with static found in test-suite, commited)
2. ibm testsuite on linux/x86-64 using clean ompi-trunk and ompi-ddt:
all passed (except for the dynamic/ tests failed!! as trunk/MTT)
3. compilation and usage of HDF5 tests on Jaguar using PGI and
PathScale compilers.
4. compilation and usage on Scicortex.
- Please note, that for the heterogeneous case, (-m32 compiled
binaries/ompi), neither
ompi-trunk, nor ompi-ddt branch would successfully launch.
This commit was SVN r21641.
2009-07-13 08:56:31 +04:00
|
|
|
err = ompi_datatype_get_extent(rdtype, &rlb, &rextent);
|
2005-08-10 21:53:43 +04:00
|
|
|
if (OMPI_SUCCESS != err) {
|
|
|
|
return err;
|
|
|
|
}
|
- Split the datatype engine into two parts: an MPI specific part in
OMPI
and a language agnostic part in OPAL. The convertor is completely
moved into OPAL. This offers several benefits as described in RFC
http://www.open-mpi.org/community/lists/devel/2009/07/6387.php
namely:
- Fewer basic types (int* and float* types, boolean and wchar
- Fixing naming scheme to ompi-nomenclature.
- Usability outside of the ompi-layer.
- Due to the fixed nature of simple opal types, their information is
completely
known at compile time and therefore constified
- With fewer datatypes (22), the actual sizes of bit-field types may be
reduced
from 64 to 32 bits, allowing reorganizing the opal_datatype
structure, eliminating holes and keeping data required in convertor
(upon send/recv) in one cacheline...
This has implications to the convertor-datastructure and other parts
of the code.
- Several performance tests have been run, the netpipe latency does not
change with
this patch on Linux/x86-64 on the smoky cluster.
- Extensive tests have been done to verify correctness (no new
regressions) using:
1. mpi_test_suite on linux/x86-64 using clean ompi-trunk and
ompi-ddt:
a. running both trunk and ompi-ddt resulted in no differences
(except for MPI_SHORT_INT and MPI_TYPE_MIX_LB_UB do now run
correctly).
b. with --enable-memchecker and running under valgrind (one buglet
when run with static found in test-suite, commited)
2. ibm testsuite on linux/x86-64 using clean ompi-trunk and ompi-ddt:
all passed (except for the dynamic/ tests failed!! as trunk/MTT)
3. compilation and usage of HDF5 tests on Jaguar using PGI and
PathScale compilers.
4. compilation and usage on Scicortex.
- Please note, that for the heterogeneous case, (-m32 compiled
binaries/ompi), neither
ompi-trunk, nor ompi-ddt branch would successfully launch.
This commit was SVN r21641.
2009-07-13 08:56:31 +04:00
|
|
|
err = ompi_datatype_get_extent(sdtype, &slb, &sextent);
|
2005-08-10 21:53:43 +04:00
|
|
|
if (OMPI_SUCCESS != err) {
|
|
|
|
return err;
|
|
|
|
}
|
|
|
|
|
|
|
|
/* Do a send-recv between the two root procs. to avoid deadlock */
|
|
|
|
err = MCA_PML_CALL(isend(sbuf, scount, sdtype, 0,
|
|
|
|
MCA_COLL_BASE_TAG_ALLGATHER,
|
|
|
|
MCA_PML_BASE_SEND_STANDARD,
|
|
|
|
comm, &reqs[rsize]));
|
|
|
|
if (OMPI_SUCCESS != err) {
|
|
|
|
return err;
|
|
|
|
}
|
|
|
|
|
|
|
|
err = MCA_PML_CALL(irecv(rbuf, rcount, rdtype, 0,
|
|
|
|
MCA_COLL_BASE_TAG_ALLGATHER, comm,
|
|
|
|
&reqs[0]));
|
|
|
|
if (OMPI_SUCCESS != err) {
|
|
|
|
return err;
|
|
|
|
}
|
|
|
|
|
|
|
|
incr = rextent * rcount;
|
|
|
|
ptmp = (char *) rbuf + incr;
|
|
|
|
for (i = 1; i < rsize; ++i, ptmp += incr) {
|
|
|
|
err = MCA_PML_CALL(irecv(ptmp, rcount, rdtype, i,
|
|
|
|
MCA_COLL_BASE_TAG_ALLGATHER,
|
|
|
|
comm, &reqs[i]));
|
|
|
|
if (MPI_SUCCESS != err) {
|
|
|
|
return err;
|
|
|
|
}
|
|
|
|
}
|
|
|
|
|
|
|
|
err = ompi_request_wait_all(rsize + 1, reqs, MPI_STATUSES_IGNORE);
|
|
|
|
if (OMPI_SUCCESS != err) {
|
|
|
|
return err;
|
|
|
|
}
|
|
|
|
|
|
|
|
/* Step 2: exchange the resuts between the root processes */
|
|
|
|
tmpbuf = (char *) malloc(scount * size * sextent);
|
|
|
|
if (NULL == tmpbuf) {
|
|
|
|
return err;
|
|
|
|
}
|
|
|
|
|
|
|
|
err = MCA_PML_CALL(isend(rbuf, rsize * rcount, rdtype, 0,
|
|
|
|
MCA_COLL_BASE_TAG_ALLGATHER,
|
|
|
|
MCA_PML_BASE_SEND_STANDARD, comm, &req));
|
|
|
|
if (OMPI_SUCCESS != err) {
|
|
|
|
goto exit;
|
|
|
|
}
|
|
|
|
|
|
|
|
err = MCA_PML_CALL(recv(tmpbuf, size * scount, sdtype, 0,
|
|
|
|
MCA_COLL_BASE_TAG_ALLGATHER, comm,
|
|
|
|
MPI_STATUS_IGNORE));
|
|
|
|
if (OMPI_SUCCESS != err) {
|
|
|
|
goto exit;
|
|
|
|
}
|
|
|
|
|
|
|
|
err = ompi_request_wait_all(1, &req, MPI_STATUS_IGNORE);
|
|
|
|
if (OMPI_SUCCESS != err) {
|
|
|
|
goto exit;
|
|
|
|
}
|
2004-08-04 02:12:57 +04:00
|
|
|
}
|
|
|
|
|
2005-08-10 14:51:42 +04:00
|
|
|
|
2004-08-04 02:12:57 +04:00
|
|
|
/* Step 3: bcast the data to the remote group. This
|
2005-08-10 14:51:42 +04:00
|
|
|
* happens in both groups simultaniously, thus we can
|
|
|
|
* not use coll_bcast (this would deadlock).
|
|
|
|
*/
|
|
|
|
if (rank != root) {
|
2005-08-10 21:53:43 +04:00
|
|
|
/* post the recv */
|
2008-03-17 22:42:18 +03:00
|
|
|
err = MCA_PML_CALL(recv(rbuf, rsize * rcount, rdtype, 0,
|
2005-08-10 21:53:43 +04:00
|
|
|
MCA_COLL_BASE_TAG_ALLGATHER, comm,
|
|
|
|
MPI_STATUS_IGNORE));
|
|
|
|
if (OMPI_SUCCESS != err) {
|
|
|
|
goto exit;
|
|
|
|
}
|
2008-03-17 22:42:18 +03:00
|
|
|
|
2005-08-10 14:51:42 +04:00
|
|
|
} else {
|
2005-08-10 21:53:43 +04:00
|
|
|
/* Send the data to every other process in the remote group
|
|
|
|
* except to rank zero. which has it already. */
|
|
|
|
for (i = 1; i < rsize; i++) {
|
|
|
|
err = MCA_PML_CALL(isend(tmpbuf, size * scount, sdtype, i,
|
|
|
|
MCA_COLL_BASE_TAG_ALLGATHER,
|
|
|
|
MCA_PML_BASE_SEND_STANDARD,
|
|
|
|
comm, &reqs[i - 1]));
|
|
|
|
if (OMPI_SUCCESS != err) {
|
|
|
|
goto exit;
|
|
|
|
}
|
2008-03-17 22:42:18 +03:00
|
|
|
|
2005-08-10 21:53:43 +04:00
|
|
|
}
|
|
|
|
|
|
|
|
err = ompi_request_wait_all(rsize - 1, reqs, MPI_STATUSES_IGNORE);
|
|
|
|
if (OMPI_SUCCESS != err) {
|
|
|
|
goto exit;
|
|
|
|
}
|
2004-08-04 02:12:57 +04:00
|
|
|
}
|
|
|
|
|
2005-08-10 14:51:42 +04:00
|
|
|
exit:
|
|
|
|
if (NULL != tmpbuf) {
|
2005-08-10 21:53:43 +04:00
|
|
|
free(tmpbuf);
|
2004-08-04 02:12:57 +04:00
|
|
|
}
|
2005-08-10 14:51:42 +04:00
|
|
|
|
2004-08-04 02:12:57 +04:00
|
|
|
return err;
|
2004-06-29 04:02:25 +04:00
|
|
|
}
|