1
1
openmpi/ompi/mca/coll/libnbc/nbc_ireduce.c

378 строки
15 KiB
C
Исходник Обычный вид История

/*
* Copyright (c) 2006 The Trustees of Indiana University and Indiana
* University Research and Technology
* Corporation. All rights reserved.
* Copyright (c) 2006 The Technical University of Chemnitz. All
* rights reserved.
* Copyright (c) 2013 Los Alamos National Security, LLC. All rights
* reserved.
2014-10-10 10:19:37 +04:00
* Copyright (c) 2014 Research Organization for Information Science
* and Technology (RIST). All rights reserved.
*
* Author(s): Torsten Hoefler <htor@cs.indiana.edu>
*
*/
#include "nbc_internal.h"
static inline int red_sched_binomial(int rank, int p, int root, void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, void *redbuf, NBC_Schedule *schedule, NBC_Handle *handle);
static inline int red_sched_chain(int rank, int p, int root, void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, int ext, int size, NBC_Schedule *schedule, NBC_Handle *handle, int fragsize);
static inline int red_sched_linear(int rank, int rsize, int root, void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, NBC_Schedule *schedule, NBC_Handle *handle);
#ifdef NBC_CACHE_SCHEDULE
/* tree comparison function for schedule cache */
int NBC_Reduce_args_compare(NBC_Reduce_args *a, NBC_Reduce_args *b, void *param) {
if( (a->sendbuf == b->sendbuf) &&
(a->recvbuf == b->recvbuf) &&
(a->count == b->count) &&
(a->datatype == b->datatype) &&
(a->op == b->op) &&
(a->root == b->root) ) {
return 0;
}
if( a->sendbuf < b->sendbuf ) {
return -1;
}
return +1;
}
#endif
/* the non-blocking reduce */
2014-10-10 10:19:37 +04:00
int ompi_coll_libnbc_ireduce(void* sendbuf, void* recvbuf, int count, MPI_Datatype datatype,
MPI_Op op, int root, struct ompi_communicator_t *comm, ompi_request_t ** request,
2014-10-10 10:19:37 +04:00
struct mca_coll_base_module_2_1_0_t *module) {
int rank, p, res, segsize, size;
MPI_Aint ext;
NBC_Schedule *schedule;
char *redbuf=NULL, inplace;
#ifdef NBC_CACHE_SCHEDULE
NBC_Reduce_args *args, *found, search;
#endif
enum { NBC_RED_BINOMIAL, NBC_RED_CHAIN } alg;
NBC_Handle *handle;
ompi_coll_libnbc_request_t **coll_req = (ompi_coll_libnbc_request_t**) request;
ompi_coll_libnbc_module_t *libnbc_module = (ompi_coll_libnbc_module_t*) module;
NBC_IN_PLACE(sendbuf, recvbuf, inplace);
res = NBC_Init_handle(comm, coll_req, libnbc_module);
if(res != NBC_OK) { printf("Error in NBC_Init_handle(%i)\n", res); return res; }
handle = (*coll_req);
res = MPI_Comm_rank(comm, &rank);
if (MPI_SUCCESS != res) { printf("MPI Error in MPI_Comm_rank() (%i)\n", res); return res; }
res = MPI_Comm_size(comm, &p);
if (MPI_SUCCESS != res) { printf("MPI Error in MPI_Comm_size() (%i)\n", res); return res; }
res = MPI_Type_extent(datatype, &ext);
if (MPI_SUCCESS != res) { printf("MPI Error in MPI_Type_extent() (%i)\n", res); return res; }
res = MPI_Type_size(datatype, &size);
if (MPI_SUCCESS != res) { printf("MPI Error in MPI_Type_size() (%i)\n", res); return res; }
/* only one node -> copy data */
if((p == 1) && !inplace) {
res = NBC_Copy(sendbuf, count, datatype, recvbuf, count, datatype, comm);
if (NBC_OK != res) { printf("Error in NBC_Copy() (%i)\n", res); return res; }
}
/* algorithm selection */
if(p > 4 || size*count < 65536) {
alg = NBC_RED_BINOMIAL;
if(rank == root) {
/* root reduces in receivebuffer */
handle->tmpbuf = malloc(ext*count);
} else {
/* recvbuf may not be valid on non-root nodes */
handle->tmpbuf = malloc(ext*count*2);
redbuf = ((char*)handle->tmpbuf)+(ext*count);
}
} else {
handle->tmpbuf = malloc(ext*count);
alg = NBC_RED_CHAIN;
segsize = 16384/2;
}
if (NULL == handle->tmpbuf) { printf("Error in malloc() (%i)\n", res); return res; }
#ifdef NBC_CACHE_SCHEDULE
/* search schedule in communicator specific tree */
search.sendbuf=sendbuf;
search.recvbuf=recvbuf;
search.count=count;
search.datatype=datatype;
search.op=op;
search.root=root;
found = (NBC_Reduce_args*)hb_tree_search((hb_tree*)handle->comminfo->NBC_Dict[NBC_REDUCE], &search);
if(found == NULL) {
#endif
schedule = (NBC_Schedule*)malloc(sizeof(NBC_Schedule));
if (NULL == schedule) { printf("Error in malloc() (%i)\n", res); return res; }
res = NBC_Sched_create(schedule);
if(res != NBC_OK) { printf("Error in NBC_Sched_create (%i)\n", res); return res; }
switch(alg) {
case NBC_RED_BINOMIAL:
res = red_sched_binomial(rank, p, root, sendbuf, recvbuf, count, datatype, op, redbuf, schedule, handle);
break;
case NBC_RED_CHAIN:
res = red_sched_chain(rank, p, root, sendbuf, recvbuf, count, datatype, op, ext, size, schedule, handle, segsize);
break;
}
if (NBC_OK != res) { printf("Error in Schedule creation() (%i)\n", res); return res; }
res = NBC_Sched_commit(schedule);
if (NBC_OK != res) { free(handle->tmpbuf); printf("Error in NBC_Sched_commit() (%i)\n", res); return res; }
#ifdef NBC_CACHE_SCHEDULE
/* save schedule to tree */
args = (NBC_Reduce_args*)malloc(sizeof(NBC_Alltoall_args));
args->sendbuf=sendbuf;
args->recvbuf=recvbuf;
args->count=count;
args->datatype=datatype;
args->op=op;
args->root=root;
args->schedule=schedule;
res = hb_tree_insert ((hb_tree*)handle->comminfo->NBC_Dict[NBC_REDUCE], args, args, 0);
if(res != 0) printf("error in dict_insert() (%i)\n", res);
/* increase number of elements for Reduce */
if(++handle->comminfo->NBC_Dict_size[NBC_REDUCE] > NBC_SCHED_DICT_UPPER) {
NBC_SchedCache_dictwipe((hb_tree*)handle->comminfo->NBC_Dict[NBC_REDUCE], &handle->comminfo->NBC_Dict_size[NBC_REDUCE]);
}
} else {
/* found schedule */
schedule=found->schedule;
}
#endif
res = NBC_Start(handle, schedule);
if (NBC_OK != res) { free(handle->tmpbuf); printf("Error in NBC_Start() (%i)\n", res); return res; }
/* tmpbuf is freed with the handle */
return NBC_OK;
}
int ompi_coll_libnbc_ireduce_inter(void* sendbuf, void* recvbuf, int count, MPI_Datatype datatype,
MPI_Op op, int root, struct ompi_communicator_t *comm, ompi_request_t ** request,
2014-10-10 10:19:37 +04:00
struct mca_coll_base_module_2_1_0_t *module) {
int rank, res, rsize;
NBC_Schedule *schedule;
MPI_Aint ext;
NBC_Handle *handle;
ompi_coll_libnbc_request_t **coll_req = (ompi_coll_libnbc_request_t**) request;
ompi_coll_libnbc_module_t *libnbc_module = (ompi_coll_libnbc_module_t*) module;
res = NBC_Init_handle(comm, coll_req, libnbc_module);
if(res != NBC_OK) { printf("Error in NBC_Init_handle(%i)\n", res); return res; }
handle = (*coll_req);
res = MPI_Comm_rank(comm, &rank);
if (MPI_SUCCESS != res) { printf("MPI Error in MPI_Comm_rank() (%i)\n", res); return res; }
res = MPI_Comm_remote_size(comm, &rsize);
if (MPI_SUCCESS != res) { printf("MPI Error in MPI_Comm_remote_size() (%i)\n", res); return res; }
res = MPI_Type_extent(datatype, &ext);
if (MPI_SUCCESS != res) { printf("MPI Error in MPI_Type_extent() (%i)\n", res); return res; }
handle->tmpbuf = malloc(ext*count);
if (NULL == handle->tmpbuf) { printf("Error in malloc() (%i)\n", res); return res; }
schedule = (NBC_Schedule*)malloc(sizeof(NBC_Schedule));
if (NULL == schedule) { printf("Error in malloc() (%i)\n", res); return res; }
res = NBC_Sched_create(schedule);
if(res != NBC_OK) { printf("Error in NBC_Sched_create (%i)\n", res); return res; }
res = red_sched_linear (rank, rsize, root, sendbuf, recvbuf, count, datatype, op, schedule, handle);
if (NBC_OK != res) { printf("Error in Schedule creation() (%i)\n", res); return res; }
res = NBC_Sched_commit(schedule);
if (NBC_OK != res) { free(handle->tmpbuf); printf("Error in NBC_Sched_commit() (%i)\n", res); return res; }
res = NBC_Start(handle, schedule);
if (NBC_OK != res) { free(handle->tmpbuf); printf("Error in NBC_Start() (%i)\n", res); return res; }
/* tmpbuf is freed with the handle */
return NBC_OK;
}
/* binomial reduce
* working principle:
* - each node gets a virtual rank vrank
* - the 'root' node get vrank 0
* - node 0 gets the vrank of the 'root'
* - all other ranks stay identical (they do not matter)
*
* Algorithm:
* pairwise exchange
* round r:
* grp = rank % 2^r
* if grp == 0: receive from rank + 2^(r-1) if it exists and reduce value
* if grp == 1: send to rank - 2^(r-1) and exit function
*
* do this for R=log_2(p) rounds
*
*/
#define RANK2VRANK(rank, vrank, root) \
{ \
vrank = rank; \
if (rank == 0) vrank = root; \
if (rank == root) vrank = 0; \
}
#define VRANK2RANK(rank, vrank, root) \
{ \
rank = vrank; \
if (vrank == 0) rank = root; \
if (vrank == root) rank = 0; \
}
static inline int red_sched_binomial(int rank, int p, int root, void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, void *redbuf, NBC_Schedule *schedule, NBC_Handle *handle) {
int firstred, vrank, vpeer, peer, res, maxr, r;
RANK2VRANK(rank, vrank, root);
maxr = (int)ceil((log((double)p)/LOG2));
firstred = 1;
for(r=1; r<=maxr; r++) {
if((vrank % (1<<r)) == 0) {
/* we have to receive this round */
vpeer = vrank + (1<<(r-1));
VRANK2RANK(peer, vpeer, root)
if(peer<p) {
res = NBC_Sched_recv(0, true, count, datatype, peer, schedule);
if (NBC_OK != res) { free(handle->tmpbuf); printf("Error in NBC_Sched_recv() (%i)\n", res); return res; }
/* we have to wait until we have the data */
res = NBC_Sched_barrier(schedule);
if (NBC_OK != res) { free(handle->tmpbuf); printf("Error in NBC_Sched_barrier() (%i)\n", res); return res; }
/* perform the reduce in my local buffer */
if(firstred) {
if(rank == root) {
/* root is the only one who reduces in the receivebuffer
* take data from sendbuf in first round - save copy */
res = NBC_Sched_op(recvbuf, false, sendbuf, false, 0, true, count, datatype, op, schedule);
} else {
/* all others may not have a receive buffer
* take data from sendbuf in first round - save copy */
res = NBC_Sched_op((char *)redbuf-(unsigned long)handle->tmpbuf, true, sendbuf, false, 0, true, count, datatype, op, schedule);
}
firstred = 0;
} else {
if(rank == root) {
/* root is the only one who reduces in the receivebuffer */
res = NBC_Sched_op(recvbuf, false, recvbuf, false, 0, true, count, datatype, op, schedule);
} else {
/* all others may not have a receive buffer */
res = NBC_Sched_op((char *)redbuf-(unsigned long)handle->tmpbuf, true, (char *)redbuf-(unsigned long)handle->tmpbuf, true, 0, true, count, datatype, op, schedule);
}
}
if (NBC_OK != res) { free(handle->tmpbuf); printf("Error in NBC_Sched_op() (%i)\n", res); return res; }
/* this cannot be done until handle->tmpbuf is unused :-( */
res = NBC_Sched_barrier(schedule);
if (NBC_OK != res) { free(handle->tmpbuf); printf("Error in NBC_Sched_barrier() (%i)\n", res); return res; }
}
} else {
/* we have to send this round */
vpeer = vrank - (1<<(r-1));
VRANK2RANK(peer, vpeer, root)
if(firstred) {
/* we did not reduce anything */
res = NBC_Sched_send(sendbuf, false, count, datatype, peer, schedule);
} else {
/* we have to use the redbuf the root (which works in receivebuf) is never sending .. */
res = NBC_Sched_send((char *)redbuf-(unsigned long)handle->tmpbuf, true, count, datatype, peer, schedule);
}
if (NBC_OK != res) { free(handle->tmpbuf); printf("Error in NBC_Sched_send() (%i)\n", res); return res; }
/* leave the game */
break;
}
}
return NBC_OK;
}
/* chain send ... */
static inline int red_sched_chain(int rank, int p, int root, void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, int ext, int size, NBC_Schedule *schedule, NBC_Handle *handle, int fragsize) {
int res, vrank, rpeer, speer, numfrag, fragnum, fragcount, thiscount;
long offset;
RANK2VRANK(rank, vrank, root);
VRANK2RANK(rpeer, vrank+1, root);
VRANK2RANK(speer, vrank-1, root);
if(count == 0) return NBC_OK;
numfrag = count*size/fragsize;
if((count*size)%fragsize != 0) numfrag++;
fragcount = count/numfrag;
/*printf("numfrag: %i, count: %i, size: %i, fragcount: %i\n", numfrag, count, size, fragcount);*/
for(fragnum = 0; fragnum < numfrag; fragnum++) {
offset = fragnum*fragcount*ext;
thiscount = fragcount;
if(fragnum == numfrag-1) {
/* last fragment may not be full */
thiscount = count-fragcount*fragnum;
}
/* last node does not recv */
if(vrank != p-1) {
res = NBC_Sched_recv((char*)offset, true, thiscount, datatype, rpeer, schedule);
if (NBC_OK != res) { printf("Error in NBC_Sched_recv() (%i)\n", res); return res; }
res = NBC_Sched_barrier(schedule);
/* root reduces into receivebuf */
if(vrank == 0) {
res = NBC_Sched_op((char*)recvbuf+offset, false, (char*)sendbuf+offset, false, (char*)offset, true, thiscount, datatype, op, schedule);
} else {
res = NBC_Sched_op((char*)offset, true, (char*)sendbuf+offset, false, (char*)offset, true, thiscount, datatype, op, schedule);
}
res = NBC_Sched_barrier(schedule);
}
/* root does not send */
if(vrank != 0) {
/* rank p-1 has to send out of sendbuffer :) */
if(vrank == p-1) {
res = NBC_Sched_send((char*)sendbuf+offset, false, thiscount, datatype, speer, schedule);
} else {
res = NBC_Sched_send((char*)offset, true, thiscount, datatype, speer, schedule);
}
if (NBC_OK != res) { printf("Error in NBC_Sched_send() (%i)\n", res); return res; }
/* this barrier here seems awkward but isn't!!!! */
res = NBC_Sched_barrier(schedule);
}
}
return NBC_OK;
}
/* simple linear algorithm for intercommunicators */
static inline int red_sched_linear(int rank, int rsize, int root, void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, NBC_Schedule *schedule, NBC_Handle *handle) {
int res, peer;
if(count == 0) return NBC_OK;
if (MPI_ROOT == root) {
res = NBC_Sched_recv (recvbuf, false, count, datatype, 0, schedule);
if (NBC_OK != res) { printf("Error in NBC_Sched_recv() (%i)\n", res); return res; }
res = NBC_Sched_barrier (schedule);
if (NBC_OK != res) { printf("Error in NBC_Sched_barrier() (%i)\n", res); return res; }
for (peer = 1 ; peer < rsize ; ++peer) {
res = NBC_Sched_recv (0, true, count, datatype, peer, schedule);
if (NBC_OK != res) { printf("Error in NBC_Sched_recv() (%i)\n", res); return res; }
res = NBC_Sched_barrier(schedule);
if (NBC_OK != res) { printf("Error in NBC_Sched_barrier() (%i)\n", res); return res; }
res = NBC_Sched_op (recvbuf, false, 0, true, recvbuf, false, count, datatype, op, schedule);
if (NBC_OK != res) { printf("Error in NBC_Sched_op() (%i)\n", res); return res; }
res = NBC_Sched_barrier(schedule);
if (NBC_OK != res) { printf("Error in NBC_Sched_barrier() (%i)\n", res); return res; }
}
} else if (MPI_PROC_NULL != root) {
res = NBC_Sched_send (sendbuf, false, count, datatype, root, schedule);
if (NBC_OK != res) { printf("Error in NBC_Sched_send() (%i)\n", res); return res; }
}
return NBC_OK;
}