2007-03-27 06:06:42 +04:00
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/*
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* Copyright (c) 2004-2005 The Trustees of Indiana University and Indiana
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* University Research and Technology
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* Corporation. All rights reserved.
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2014-04-06 22:23:49 +04:00
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* Copyright (c) 2004-2014 The University of Tennessee and The University
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2007-03-27 06:06:42 +04:00
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* of Tennessee Research Foundation. All rights
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* reserved.
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2015-06-24 06:59:57 +03:00
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* Copyright (c) 2004-2005 High Performance Computing Center Stuttgart,
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2007-03-27 06:06:42 +04:00
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* University of Stuttgart. All rights reserved.
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* Copyright (c) 2004-2005 The Regents of the University of California.
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* All rights reserved.
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2010-05-21 02:23:44 +04:00
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* Copyright (c) 2006-2010 University of Houston. All rights reserved.
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2016-07-05 07:36:56 +03:00
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* Copyright (c) 2015-2016 Research Organization for Information Science
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2015-08-28 10:43:13 +03:00
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* and Technology (RIST). All rights reserved.
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2007-03-27 06:06:42 +04:00
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* $COPYRIGHT$
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2015-06-24 06:59:57 +03:00
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*
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2007-03-27 06:06:42 +04:00
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* Additional copyrights may follow
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2015-06-24 06:59:57 +03:00
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*
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2007-03-27 06:06:42 +04:00
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* $HEADER$
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*/
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#include "ompi_config.h"
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#include "coll_inter.h"
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#include "mpi.h"
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- Split the datatype engine into two parts: an MPI specific part in
OMPI
and a language agnostic part in OPAL. The convertor is completely
moved into OPAL. This offers several benefits as described in RFC
http://www.open-mpi.org/community/lists/devel/2009/07/6387.php
namely:
- Fewer basic types (int* and float* types, boolean and wchar
- Fixing naming scheme to ompi-nomenclature.
- Usability outside of the ompi-layer.
- Due to the fixed nature of simple opal types, their information is
completely
known at compile time and therefore constified
- With fewer datatypes (22), the actual sizes of bit-field types may be
reduced
from 64 to 32 bits, allowing reorganizing the opal_datatype
structure, eliminating holes and keeping data required in convertor
(upon send/recv) in one cacheline...
This has implications to the convertor-datastructure and other parts
of the code.
- Several performance tests have been run, the netpipe latency does not
change with
this patch on Linux/x86-64 on the smoky cluster.
- Extensive tests have been done to verify correctness (no new
regressions) using:
1. mpi_test_suite on linux/x86-64 using clean ompi-trunk and
ompi-ddt:
a. running both trunk and ompi-ddt resulted in no differences
(except for MPI_SHORT_INT and MPI_TYPE_MIX_LB_UB do now run
correctly).
b. with --enable-memchecker and running under valgrind (one buglet
when run with static found in test-suite, commited)
2. ibm testsuite on linux/x86-64 using clean ompi-trunk and ompi-ddt:
all passed (except for the dynamic/ tests failed!! as trunk/MTT)
3. compilation and usage of HDF5 tests on Jaguar using PGI and
PathScale compilers.
4. compilation and usage on Scicortex.
- Please note, that for the heterogeneous case, (-m32 compiled
binaries/ompi), neither
ompi-trunk, nor ompi-ddt branch would successfully launch.
This commit was SVN r21641.
2009-07-13 08:56:31 +04:00
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#include "ompi/datatype/ompi_datatype.h"
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2009-03-13 05:10:32 +03:00
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#include "ompi/request/request.h"
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#include "ompi/communicator/communicator.h"
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2007-03-27 06:06:42 +04:00
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#include "ompi/constants.h"
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#include "ompi/mca/coll/coll.h"
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#include "ompi/mca/coll/base/coll_tags.h"
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#include "ompi/mca/pml/pml.h"
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/*
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* allgatherv_inter
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*
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* Function: - allgatherv using other MPI collectives
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* Accepts: - same as MPI_Allgatherv()
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* Returns: - MPI_SUCCESS or error code
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*/
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int
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2015-08-28 10:43:13 +03:00
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mca_coll_inter_allgatherv_inter(const void *sbuf, int scount,
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2007-03-27 06:06:42 +04:00
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struct ompi_datatype_t *sdtype,
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2015-08-28 10:43:13 +03:00
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void *rbuf, const int *rcounts, const int *disps,
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2007-03-27 06:06:42 +04:00
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struct ompi_datatype_t *rdtype,
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2007-08-19 07:37:49 +04:00
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struct ompi_communicator_t *comm,
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2008-07-29 02:40:57 +04:00
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mca_coll_base_module_t *module)
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2007-03-27 06:06:42 +04:00
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{
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int i, rank, size, size_local, total=0, err;
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int *count=NULL,*displace=NULL;
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2016-06-08 10:48:00 +03:00
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char *ptmp_free=NULL, *ptmp=NULL;
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2014-04-06 22:23:49 +04:00
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ompi_datatype_t *ndtype = NULL;
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2007-03-27 06:06:42 +04:00
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ompi_request_t *req[2];
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rank = ompi_comm_rank(comm);
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size_local = ompi_comm_size(comm->c_local_comm);
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size = ompi_comm_remote_size(comm);
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if (0 == rank) {
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count = (int *)malloc(sizeof(int) * size_local);
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displace = (int *)malloc(sizeof(int) * size_local);
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2014-04-06 22:23:49 +04:00
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if ((NULL == count) || (NULL == displace)) {
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err = OMPI_ERR_OUT_OF_RESOURCE;
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goto exit;
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2007-03-27 06:06:42 +04:00
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}
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}
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/* Local gather to get the scount of each process */
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2015-06-24 06:59:57 +03:00
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err = comm->c_local_comm->c_coll.coll_gather(&scount, 1, MPI_INT,
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count, 1, MPI_INT,
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2007-08-19 07:37:49 +04:00
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0, comm->c_local_comm,
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comm->c_local_comm->c_coll.coll_gather_module);
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2007-03-27 06:06:42 +04:00
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if (OMPI_SUCCESS != err) {
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2014-04-06 22:23:49 +04:00
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goto exit;
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2007-03-27 06:06:42 +04:00
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}
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if(0 == rank) {
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displace[0] = 0;
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for (i = 1; i < size_local; i++) {
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displace[i] = displace[i-1] + count[i-1];
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}
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2016-07-05 07:36:56 +03:00
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total = 0;
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2007-03-27 06:06:42 +04:00
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for (i = 0; i < size_local; i++) {
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2016-07-05 07:36:56 +03:00
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total = total + count[i];
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2007-03-27 06:06:42 +04:00
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}
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2016-07-05 07:36:56 +03:00
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if ( total > 0 ) {
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ptrdiff_t gap, span;
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span = opal_datatype_span(&sdtype->super, total, &gap);
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ptmp_free = (char*)malloc(span);
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if (NULL == ptmp_free) {
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2014-04-06 22:23:49 +04:00
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err = OMPI_ERR_OUT_OF_RESOURCE;
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goto exit;
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2010-05-21 02:23:44 +04:00
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}
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2016-07-05 07:36:56 +03:00
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ptmp = ptmp_free - gap;
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2007-03-27 06:06:42 +04:00
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}
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}
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2015-06-24 06:59:57 +03:00
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err = comm->c_local_comm->c_coll.coll_gatherv(sbuf, scount, sdtype,
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ptmp, count, displace,
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2007-08-19 07:37:49 +04:00
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sdtype,0, comm->c_local_comm,
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comm->c_local_comm->c_coll.coll_gatherv_module);
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2007-03-27 06:06:42 +04:00
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if (OMPI_SUCCESS != err) {
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2014-04-06 22:23:49 +04:00
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goto exit;
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2007-03-27 06:06:42 +04:00
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}
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2014-04-06 22:23:49 +04:00
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|
|
|
- Split the datatype engine into two parts: an MPI specific part in
OMPI
and a language agnostic part in OPAL. The convertor is completely
moved into OPAL. This offers several benefits as described in RFC
http://www.open-mpi.org/community/lists/devel/2009/07/6387.php
namely:
- Fewer basic types (int* and float* types, boolean and wchar
- Fixing naming scheme to ompi-nomenclature.
- Usability outside of the ompi-layer.
- Due to the fixed nature of simple opal types, their information is
completely
known at compile time and therefore constified
- With fewer datatypes (22), the actual sizes of bit-field types may be
reduced
from 64 to 32 bits, allowing reorganizing the opal_datatype
structure, eliminating holes and keeping data required in convertor
(upon send/recv) in one cacheline...
This has implications to the convertor-datastructure and other parts
of the code.
- Several performance tests have been run, the netpipe latency does not
change with
this patch on Linux/x86-64 on the smoky cluster.
- Extensive tests have been done to verify correctness (no new
regressions) using:
1. mpi_test_suite on linux/x86-64 using clean ompi-trunk and
ompi-ddt:
a. running both trunk and ompi-ddt resulted in no differences
(except for MPI_SHORT_INT and MPI_TYPE_MIX_LB_UB do now run
correctly).
b. with --enable-memchecker and running under valgrind (one buglet
when run with static found in test-suite, commited)
2. ibm testsuite on linux/x86-64 using clean ompi-trunk and ompi-ddt:
all passed (except for the dynamic/ tests failed!! as trunk/MTT)
3. compilation and usage of HDF5 tests on Jaguar using PGI and
PathScale compilers.
4. compilation and usage on Scicortex.
- Please note, that for the heterogeneous case, (-m32 compiled
binaries/ompi), neither
ompi-trunk, nor ompi-ddt branch would successfully launch.
This commit was SVN r21641.
2009-07-13 08:56:31 +04:00
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ompi_datatype_create_indexed(size,rcounts,disps,rdtype,&ndtype);
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ompi_datatype_commit(&ndtype);
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2007-03-27 06:06:42 +04:00
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2015-06-24 06:59:57 +03:00
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if (0 == rank) {
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2007-03-27 06:06:42 +04:00
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/* Exchange data between roots */
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err = MCA_PML_CALL(irecv(rbuf, 1, ndtype, 0,
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MCA_COLL_BASE_TAG_ALLGATHERV, comm,
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&(req[0])));
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if (OMPI_SUCCESS != err) {
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2014-04-06 22:23:49 +04:00
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goto exit;
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2007-03-27 06:06:42 +04:00
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}
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err = MCA_PML_CALL(isend(ptmp, total, sdtype, 0,
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MCA_COLL_BASE_TAG_ALLGATHERV,
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MCA_PML_BASE_SEND_STANDARD,
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comm, &(req[1])));
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if (OMPI_SUCCESS != err) {
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2014-04-06 22:23:49 +04:00
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goto exit;
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2007-03-27 06:06:42 +04:00
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}
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err = ompi_request_wait_all(2, req, MPI_STATUSES_IGNORE);
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if (OMPI_SUCCESS != err) {
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2014-04-06 22:23:49 +04:00
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goto exit;
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2007-03-27 06:06:42 +04:00
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}
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}
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2015-06-24 06:59:57 +03:00
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2007-03-27 06:06:42 +04:00
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/* bcast the message to all the local processes */
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2015-06-24 06:59:57 +03:00
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err = comm->c_local_comm->c_coll.coll_bcast(rbuf, 1, ndtype,
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2007-08-19 07:37:49 +04:00
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0, comm->c_local_comm,
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comm->c_local_comm->c_coll.coll_bcast_module);
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2014-04-06 22:23:49 +04:00
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exit:
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if( NULL != ndtype ) {
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ompi_datatype_destroy(&ndtype);
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2007-03-27 06:06:42 +04:00
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}
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2016-07-05 07:36:56 +03:00
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if (NULL != ptmp_free) {
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free(ptmp_free);
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2007-03-27 06:06:42 +04:00
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}
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if (NULL != displace) {
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2014-04-06 22:23:49 +04:00
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free(displace);
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2007-03-27 06:06:42 +04:00
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}
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if (NULL != count) {
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2014-04-06 22:23:49 +04:00
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free(count);
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2007-03-27 06:06:42 +04:00
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}
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return err;
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}
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